Cow genome map
| Conread name: | OvF2-UMC-pd0fol-009-c04 |
| Conread position: | 1-259 |
| Cow position: | chr5:70531519-70531263 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 189, 57 |
| Conread position: | 1-368 |
| Cow position: | chr5:6572294-6571953 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 261 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 296, 73 |
| Conread position: | 1-368 |
| Cow position: | chr5:34670145-34669791 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 189, 101 |
| Conread position: | 1-368 |
| Cow position: | chr5:71457103-71456750 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 189, 96 |
| Conread position: | 2-246 |
| Cow position: | chr5:40791784-40792025 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 46 |
| Conread position: | 2-349 |
| Cow position: | chr5:30051014-30050662 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 234 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 29, 20 |
| Conread position: | 2-363 |
| Cow position: | chr5:34191868-34192213 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 259 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 153, 73 |
| Conread position: | 2-366 |
| Cow position: | chr5:25920830-25920491 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 250 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 184, 101 |
| Conread position: | 2-367 |
| Cow position: | chr5:54721599-54721949 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 96 |
| Conread position: | 2-367 |
| Cow position: | chr5:69519545-69519897 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 184, 23 |
| Conread position: | 2-368 |
| Cow position: | chr5:30301802-30302142 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 40 |
| Conread position: | 2-368 |
| Cow position: | chr5:32965125-32964762 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 110 |
| Conread position: | 2-368 |
| Cow position: | chr5:44709438-44709074 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 266 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 76, 122 |
| Conread position: | 2-368 |
| Cow position: | chr5:51684678-51684319 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 266 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 21, 100 |
| Conread position: | 2-368 |
| Cow position: | chr5:62377318-62377663 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 69 |
| Conread position: | 2-370 |
| Cow position: | chr5:15723383-15723015 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 21 |
| Conread position: | 2-370 |
| Cow position: | chr5:21827770-21828120 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 63 |
| Conread position: | 2-370 |
| Cow position: | chr5:26466584-26466924 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 2-370 |
| Cow position: | chr5:51501828-51502184 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 185, 99 |
| Conread position: | 2-370 |
| Cow position: | chr5:53834598-53834952 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 78 |
| Conread position: | 3-185 |
| Cow position: | chr5:14631320-14631139 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 163, 94 |
| Conread position: | 3-368 |
| Cow position: | chr5:32697866-32697494 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 80 |
| Conread position: | 3-368 |
| Cow position: | chr5:52829833-52829489 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 260 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 179, 52 |
| Conread position: | 3-370 |
| Cow position: | chr5:18491351-18491708 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 4-349 |
| Cow position: | chr5:47471339-47471676 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 250 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 160, 90 |
| Conread position: | 4-365 |
| Cow position: | chr5:47872160-47871813 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 97 |
| Conread position: | 4-368 |
| Cow position: | chr5:2976732-2977083 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 101 |
| Conread position: | 9-368 |
| Cow position: | chr5:72046712-72046366 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 94 |
| Conread position: | 13-359 |
| Cow position: | chr5:10262320-10261987 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 237 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 177, 88 |
| Conread position: | 13-367 |
| Cow position: | chr5:58461742-58461396 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 247 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 177, 87 |
| Conread position: | 14-367 |
| Cow position: | chr5:4629724-4630057 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 250 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 176, 88 |
| Conread position: | 14-368 |
| Cow position: | chr5:17646123-17645784 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 41 |
| Conread position: | 14-368 |
| Cow position: | chr5:56442215-56442555 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 244 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 168, 87 |
| Conread position: | 14-372 |
| Cow position: | chr5:64958821-64958480 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 243 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 17, 11 |
| Conread position: | 15-372 |
| Cow position: | chr5:45704978-45705313 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 248 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 175, 60 |
| Conread position: | 16-359 |
| Cow position: | chr5:26135309-26134979 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 241 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 132, 84 |
| Conread position: | 20-368 |
| Cow position: | chr5:54336867-54337200 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 246 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 168, 44 |
| Conread position: | 21-368 |
| Cow position: | chr5:15677024-15677357 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 247 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 169, 80 |
| Conread position: | 22-368 |
| Cow position: | chr5:43991247-43991580 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 15 |
| Conread position: | 30-370 |
| Cow position: | chr5:70348380-70348706 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 218 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 154, 21 |
| Conread position: | 31-368 |
| Cow position: | chr5:48574846-48574529 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 241 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 59, 71 |
| Conread position: | 32-370 |
| Cow position: | chr5:27490949-27491277 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 226 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 116, 73 |
| Conread position: | 42-363 |
| Cow position: | chr5:27173695-27174005 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 165, 15 |
| Conread position: | 45-368 |
| Cow position: | chr5:31634425-31634734 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 226 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 147, 56 |
| Conread position: | 57-368 |
| Cow position: | chr5:35207241-35207540 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 222 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 133, 44 |
| Conread position: | 81-357 |
| Cow position: | chr5:6840180-6839902 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 112, 62 |
| Conread position: | 164-368 |
| Cow position: | chr5:40828274-40828082 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 26, 88 |
| Conread position: | 164-370 |
| Cow position: | chr5:72007788-72007593 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 158 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 28, 88 |
| Conread position: | 192-366 |
| Cow position: | chr5:54125200-54125367 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 73, 0 |
Show alignments to all cow chromosomes.