Cow genome map
| Conread name: | OvF2-UMC-pd0fol-009-c04 |
| Conread position: | 1-368 |
| Cow position: | chr6:28157183-28156833 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 96 |
| Conread position: | 2-185 |
| Cow position: | chr6:42420225-42420408 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 146 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 44, 96 |
| Conread position: | 2-255 |
| Cow position: | chr6:65848286-65848030 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 60 |
| Conread position: | 2-333 |
| Cow position: | chr6:53935551-53935236 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 239 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 47, 12 |
| Conread position: | 2-344 |
| Cow position: | chr6:49761546-49761877 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 246 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 53, 102 |
| Conread position: | 2-344 |
| Cow position: | chr6:64425875-64426201 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 244 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 188, 98 |
| Conread position: | 2-361 |
| Cow position: | chr6:529807-529463 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 246 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 54, 100 |
| Conread position: | 2-362 |
| Cow position: | chr6:16766757-16766411 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 249 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 191, 99 |
| Conread position: | 2-362 |
| Cow position: | chr6:59596324-59596676 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 257 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 45, 79 |
| Conread position: | 2-366 |
| Cow position: | chr6:47149886-47149532 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 9 |
| Conread position: | 2-367 |
| Cow position: | chr6:6944856-6944511 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 184, 48 |
| Conread position: | 2-368 |
| Cow position: | chr6:2618483-2618130 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 71 |
| Conread position: | 2-368 |
| Cow position: | chr6:3893560-3893201 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 83 |
| Conread position: | 2-368 |
| Cow position: | chr6:28549980-28549599 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 243 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 40, 109 |
| Conread position: | 2-368 |
| Cow position: | chr6:47573881-47574226 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 78 |
| Conread position: | 2-368 |
| Cow position: | chr6:52249425-52249078 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 70 |
| Conread position: | 2-368 |
| Cow position: | chr6:52978075-52977730 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 338, 95 |
| Conread position: | 2-368 |
| Cow position: | chr6:60332426-60332781 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 99 |
| Conread position: | 2-369 |
| Cow position: | chr6:13314946-13314592 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 241, 79 |
| Conread position: | 2-370 |
| Cow position: | chr6:11193503-11193143 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 190, 64 |
| Conread position: | 2-370 |
| Cow position: | chr6:12926656-12927012 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 260 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 114, 99 |
| Conread position: | 2-370 |
| Cow position: | chr6:14897263-14897620 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 100 |
| Conread position: | 2-370 |
| Cow position: | chr6:32286637-32286990 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 95 |
| Conread position: | 2-370 |
| Cow position: | chr6:46284016-46283661 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 91 |
| Conread position: | 2-371 |
| Cow position: | chr6:20553158-20552803 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 254 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 146, 99 |
| Conread position: | 2-372 |
| Cow position: | chr6:7105445-7105093 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 257 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 188, 99 |
| Conread position: | 2-372 |
| Cow position: | chr6:47380749-47381124 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 95 |
| Conread position: | 3-368 |
| Cow position: | chr6:9840045-9839699 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 185, 28 |
| Conread position: | 3-368 |
| Cow position: | chr6:55593154-55593507 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 256 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 187, 98 |
| Conread position: | 4-368 |
| Cow position: | chr6:27172914-27173278 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 238 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 188, 97 |
| Conread position: | 4-370 |
| Cow position: | chr6:1498284-1498640 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 57 |
| Conread position: | 6-359 |
| Cow position: | chr6:7112848-7112510 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 95 |
| Conread position: | 14-344 |
| Cow position: | chr6:50113779-50114091 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 234 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 173, 79 |
| Conread position: | 14-350 |
| Cow position: | chr6:65049568-65049266 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 231 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 14-368 |
| Cow position: | chr6:15471718-15471376 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 15, 81 |
| Conread position: | 14-368 |
| Cow position: | chr6:43187200-43187546 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 243 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 23, 15 |
| Conread position: | 18-359 |
| Cow position: | chr6:33508357-33508674 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 230 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 18-370 |
| Cow position: | chr6:11639100-11638767 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 245 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 170, 55 |
| Conread position: | 21-367 |
| Cow position: | chr6:29688967-29689294 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 169, 58 |
| Conread position: | 22-368 |
| Cow position: | chr6:19044317-19044640 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 244 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 50, 80 |
| Conread position: | 29-360 |
| Cow position: | chr6:43797791-43797469 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 161, 72 |
| Conread position: | 29-368 |
| Cow position: | chr6:21588094-21588421 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 72 |
| Conread position: | 33-370 |
| Cow position: | chr6:32018998-32018663 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 29 |
| Conread position: | 36-370 |
| Cow position: | chr6:45666810-45666491 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 235 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 154, 57 |
| Conread position: | 42-351 |
| Cow position: | chr6:44097828-44098126 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 227 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 7, 61 |
| Conread position: | 42-368 |
| Cow position: | chr6:33300788-33301105 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 229 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 140, 59 |
| Conread position: | 57-370 |
| Cow position: | chr6:22225835-22225544 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 160, 45 |
| Conread position: | 75-350 |
| Cow position: | chr6:17344356-17344619 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 115, 26 |
| Conread position: | 163-366 |
| Cow position: | chr6:58036525-58036716 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 27, 19 |
| Conread position: | 177-370 |
| Cow position: | chr6:56842278-56842461 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 13, 75 |
| Conread position: | 178-364 |
| Cow position: | chr6:59603565-59603389 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 12, 66 |
Show alignments to all cow chromosomes.