Cow genome map
| Conread name: | OvF2-UMC-pd0fol-009-c04 |
| Conread position: | 1-318 |
| Cow position: | chrX:39352692-39352396 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 101 |
| Conread position: | 1-368 |
| Cow position: | chrX:28633535-28633197 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 254 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 142, 96 |
| Conread position: | 2-174 |
| Cow position: | chrX:13912022-13911854 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 133 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 2-245 |
| Cow position: | chrX:29047035-29047280 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 95 |
| Conread position: | 2-344 |
| Cow position: | chrX:41885257-41884928 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 100 |
| Conread position: | 2-359 |
| Cow position: | chrX:10866936-10866604 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 254 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 190, 69 |
| Conread position: | 2-366 |
| Cow position: | chrX:4406804-4407155 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 54 |
| Conread position: | 2-368 |
| Cow position: | chrX:620341-619990 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 76 |
| Conread position: | 2-368 |
| Cow position: | chrX:2382386-2382741 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 94 |
| Conread position: | 2-368 |
| Cow position: | chrX:10413053-10412702 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 27 |
| Conread position: | 2-368 |
| Cow position: | chrX:12310465-12310115 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 101 |
| Conread position: | 2-368 |
| Cow position: | chrX:13178686-13178333 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 63 |
| Conread position: | 2-368 |
| Cow position: | chrX:16325605-16325254 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 27 |
| Conread position: | 2-368 |
| Cow position: | chrX:20503563-20503914 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 252 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 188, 160 |
| Conread position: | 2-368 |
| Cow position: | chrX:20674788-20675142 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 99 |
| Conread position: | 2-368 |
| Cow position: | chrX:21592213-21592565 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 77 |
| Conread position: | 2-368 |
| Cow position: | chrX:22579467-22579113 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 254 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 158, 100 |
| Conread position: | 2-368 |
| Cow position: | chrX:25817897-25817548 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 74 |
| Conread position: | 2-368 |
| Cow position: | chrX:34221683-34222039 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 254 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 146, 37 |
| Conread position: | 2-368 |
| Cow position: | chrX:34564034-34564365 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 95 |
| Conread position: | 2-368 |
| Cow position: | chrX:38228396-38228039 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 85 |
| Conread position: | 2-368 |
| Cow position: | chrX:41791799-41791441 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 253 |
| Conread position: | 2-368 |
| Cow position: | chrX:45374187-45373834 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 257 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 153, 99 |
| Conread position: | 2-368 |
| Cow position: | chrX:47000733-47000379 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 95 |
| Conread position: | 2-371 |
| Cow position: | chrX:3406408-3406064 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 256 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 188, 69 |
| Conread position: | 2-372 |
| Cow position: | chrX:39556868-39556517 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 261 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 13, 93 |
| Conread position: | 3-368 |
| Cow position: | chrX:1617312-1616960 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 189, 99 |
| Conread position: | 3-368 |
| Cow position: | chrX:22819000-22819352 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 254 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 187, 39 |
| Conread position: | 3-368 |
| Cow position: | chrX:41847607-41847256 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 97 |
| Conread position: | 4-367 |
| Cow position: | chrX:45401079-45400744 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 251 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 186, 78 |
| Conread position: | 4-368 |
| Cow position: | chrX:12145021-12145376 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 97 |
| Conread position: | 4-368 |
| Cow position: | chrX:46296584-46296934 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 72 |
| Conread position: | 14-368 |
| Cow position: | chrX:16782214-16782554 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 176, 87 |
| Conread position: | 14-368 |
| Cow position: | chrX:18193622-18193964 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 176, 87 |
| Conread position: | 14-368 |
| Cow position: | chrX:22539102-22538759 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 249 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 40, 88 |
| Conread position: | 16-370 |
| Cow position: | chrX:40560604-40560265 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 45 |
| Conread position: | 16-371 |
| Cow position: | chrX:29892018-29892364 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 247 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 48, 89 |
| Conread position: | 16-372 |
| Cow position: | chrX:10440897-10440548 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 235 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 101, 80 |
| Conread position: | 20-343 |
| Cow position: | chrX:40184011-40184323 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 226 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 170, 81 |
| Conread position: | 20-370 |
| Cow position: | chrX:33804048-33803719 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 25-346 |
| Cow position: | chrX:24279860-24280173 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 232 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 47, 54 |
| Conread position: | 58-359 |
| Cow position: | chrX:1056411-1056121 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 218 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 132, 43 |
| Conread position: | 61-368 |
| Cow position: | chrX:12178653-12178953 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 211 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 129, 40 |
| Conread position: | 63-368 |
| Cow position: | chrX:28867034-28866738 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 38 |
| Conread position: | 76-368 |
| Cow position: | chrX:12465032-12465306 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 204 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 81-368 |
| Cow position: | chrX:41879920-41879642 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 207 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 167, 20 |
| Conread position: | 86-368 |
| Cow position: | chrX:4995620-4995884 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 211 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 105, 15 |
| Conread position: | 98-370 |
| Cow position: | chrX:10301146-10301404 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 198 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 92, 31 |
| Conread position: | 100-368 |
| Cow position: | chrX:6766717-6766461 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 193 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 84, 150 |
| Conread position: | 104-370 |
| Cow position: | chrX:19929457-19929711 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 197 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 88, 29 |
| Conread position: | 122-367 |
| Cow position: | chrX:41527470-41527241 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 66, 36 |
| Conread position: | 129-370 |
| Cow position: | chrX:16021329-16021100 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 61, 115 |
| Conread position: | 138-368 |
| Cow position: | chrX:23969408-23969625 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 178 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 20, 110 |
| Conread position: | 163-370 |
| Cow position: | chrX:40268561-40268762 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 166 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 27, 88 |
| Conread position: | 190-370 |
| Cow position: | chrX:38935532-38935698 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 201-362 |
| Cow position: | chrX:7177784-7177939 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 118 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 46, 0 |
Show alignments to all cow chromosomes.