Cow genome map

Conread name: OvF2-UMC-pd0fol-011-c09

Conread position: 235-404
Cow position: chr27:23890967-23890797 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 120
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 52, 44

Conread position: 236-400
Cow position: chr27:26111888-26112052 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 120
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 85, 55

Conread position: 240-361
Cow position: chr27:21993693-21993816 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 96
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 44, 0

Conread position: 244-404
Cow position: chr27:22179748-22179907 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 121
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 25, 104

Conread position: 258-400
Cow position: chr27:4812879-4813020 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 105
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 27, 0

Conread position: 260-402
Cow position: chr27:590761-590901 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 111
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 24, 0

Conread position: 261-361
Cow position: chr27:16522551-16522652 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 84
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 23, 0

Conread position: 266-402
Cow position: chr27:24738802-24738939 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 106
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 100, 20

Conread position: 266-404
Cow position: chr27:26407166-26407300 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 107
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 19, 0

Conread position: 269-392
Cow position: chr27:4858645-4858768 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 96
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 269-404
Cow position: chr27:23594317-23594181 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 110
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 18, 88

Conread position: 270-404
Cow position: chr27:17646176-17646309 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 100
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 14, 0

Conread position: 271-400
Cow position: chr27:7343438-7343566 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 107
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 109, 9

Conread position: 272-400
Cow position: chr27:4835615-4835743 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 102
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 272-402
Cow position: chr27:12710240-12710109 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 112
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 91, 119

Conread position: 273-403
Cow position: chr27:15002987-15003118 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 105
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 11, 0

Conread position: 273-404
Cow position: chr27:28496383-28496511 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 101
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 12, 0

Conread position: 274-404
Cow position: chr27:20067986-20068115 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 106
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 13, 50

Conread position: 276-402
Cow position: chr27:12191493-12191617 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 97
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 8, 0

Conread position: 276-404
Cow position: chr27:426955-426829 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 109
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 9, 0

Conread position: 276-404
Cow position: chr27:29431450-29431328 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 104
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 15, 0

Conread position: 277-404
Cow position: chr27:12459270-12459148 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 104
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 16, 8

Conread position: 277-404
Cow position: chr27:28206784-28206661 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 104
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 8, 0

Conread position: 279-404
Cow position: chr27:4720130-4720253 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 98
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 10, 68

Conread position: 279-404
Cow position: chr27:6319902-6319778 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 105
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 6, 0

Conread position: 280-395
Cow position: chr27:27613637-27613752 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 92
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 86, 5

Conread position: 280-399
Cow position: chr27:26999440-26999558 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 98
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 5, 0

Conread position: 280-401
Cow position: chr27:21669135-21669255 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 96
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 8, 0

Conread position: 280-401
Cow position: chr27:23918052-23918178 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 101
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 43, 5

Conread position: 280-404
Cow position: chr27:4672998-4672871 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 103
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 46, 5

Conread position: 280-404
Cow position: chr27:8353458-8353338 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 104
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 5, 0

Conread position: 280-404
Cow position: chr27:14670400-14670523 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 96
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 5, 0

Conread position: 280-404
Cow position: chr27:15668789-15668912 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 95
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 5, 0

Conread position: 280-404
Cow position: chr27:16589720-16589843 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 98
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 5, 0

Conread position: 280-404
Cow position: chr27:17397472-17397595 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 105
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 5, 0

Conread position: 280-404
Cow position: chr27:20549727-20549852 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 98
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 74, 5

Conread position: 280-404
Cow position: chr27:20641352-20641474 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 98
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 118, 0

Conread position: 280-404
Cow position: chr27:22348472-22348349 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 100
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 49, 5

Conread position: 280-404
Cow position: chr27:22569765-22569644 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 99
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 5, 0

Conread position: 280-404
Cow position: chr27:23560048-23560172 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 102
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 280-404
Cow position: chr27:24014757-24014880 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 98
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 6, 0

Conread position: 280-404
Cow position: chr27:26239007-26238885 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 103
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 8, 0

Conread position: 280-404
Cow position: chr27:27055268-27055148 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 101
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 5, 0

Conread position: 280-404
Cow position: chr27:28478562-28478439 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 103
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 5, 0

Conread position: 280-404
Cow position: chr27:30489428-30489551 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 113
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 5, 0

Conread position: 281-398
Cow position: chr27:20656637-20656754 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 94
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 281-400
Cow position: chr27:16284456-16284338 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 96
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 5, 0

Conread position: 281-404
Cow position: chr27:1123012-1122891 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 100
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 9, 0

Conread position: 282-404
Cow position: chr27:18435152-18435274 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 97
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 282-404
Cow position: chr27:23452442-23452321 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 105
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 52, 0

Conread position: 283-402
Cow position: chr27:299401-299519 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 98
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 60, 0

Conread position: 283-404
Cow position: chr27:7212733-7212854 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 93
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 283-404
Cow position: chr27:20812885-20812764 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 94
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 283-404
Cow position: chr27:23107924-23108041 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 98
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 40, 0

Conread position: 283-404
Cow position: chr27:23510967-23510842 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 101
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 93, 76

Conread position: 284-402
Cow position: chr27:20092855-20092973 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 93
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 284-402
Cow position: chr27:22220533-22220415 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 96
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 284-404
Cow position: chr27:16103787-16103671 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 101
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 9, 58

Conread position: 285-402
Cow position: chr27:19387996-19387880 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 99
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 52, 0

Conread position: 285-402
Cow position: chr27:27460594-27460709 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 97
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 40, 32

Conread position: 285-403
Cow position: chr27:4944536-4944654 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 101
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 285-403
Cow position: chr27:23485187-23485072 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 99
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 61, 0

Conread position: 285-404
Cow position: chr27:6674257-6674140 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 94
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 61, 0

Conread position: 285-404
Cow position: chr27:15409058-15409177 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 99
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 285-404
Cow position: chr27:19508991-19508872 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 106
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 0, 0

Conread position: 285-404
Cow position: chr27:26643662-26643549 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 96
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 19, 0

Conread position: 286-382
Cow position: chr27:21130283-21130187 (view UCSC Genome Browser custom track)
Alignm length: 97
Alignm identity: 83
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 286-404
Cow position: chr27:24223929-24223811 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 94
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 57, 67

Conread position: 288-402
Cow position: chr27:22171272-22171161 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 98
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 53, 0

Conread position: 288-404
Cow position: chr27:788822-788938 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 98
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 288-404
Cow position: chr27:6106675-6106563 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 93
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 54, 0

Conread position: 288-404
Cow position: chr27:7412368-7412252 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 96
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 288-404
Cow position: chr27:22035402-22035518 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 98
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 288-404
Cow position: chr27:27389046-27389164 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 93
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 35, 0

Conread position: 289-403
Cow position: chr27:14343481-14343589 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 95
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 69, 41

Conread position: 290-403
Cow position: chr27:16780839-16780728 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 93
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 101, 54

Conread position: 290-404
Cow position: chr27:13204432-13204319 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 96
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 56, 0

Conread position: 290-404
Cow position: chr27:29319384-29319270 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 89
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 292-404
Cow position: chr27:237240-237130 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 95
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 71, 0

Conread position: 292-404
Cow position: chr27:22421880-22421992 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 88
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 292-404
Cow position: chr27:26617377-26617268 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 93
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 31, 0

Conread position: 294-402
Cow position: chr27:31148730-31148622 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 86
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 294-404
Cow position: chr27:20486027-20485917 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 91
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 26, 82

Conread position: 296-402
Cow position: chr27:26323415-26323310 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 88
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 19, 0

Conread position: 296-404
Cow position: chr27:11466498-11466606 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 90
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 298-403
Cow position: chr27:20629034-20628929 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 90
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 300-404
Cow position: chr27:19717878-19717774 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 86
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 300-404
Cow position: chr27:20553695-20553591 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 89
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 78, 73

Conread position: 302-400
Cow position: chr27:20770567-20770665 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 85
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 305-404
Cow position: chr27:19576365-19576464 (view UCSC Genome Browser custom track)
Alignm length: 100
Alignm identity: 86
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 306-404
Cow position: chr27:19741451-19741549 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 82
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 313-404
Cow position: chr27:2949377-2949466 (view UCSC Genome Browser custom track)
Alignm length: 92
Alignm identity: 79
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 51, 0

Show alignments to all cow chromosomes.