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Cow genome map

           
Conread name:
           
OvF4-UMC-p4mm3-001-a05
        

               
Conread position:
               
1-164
               

               
Cow position:
               
chr11:25387002-25387161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
1-180
               

               
Cow position:
               
chr11:3790772-3790951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
48, 16
               

               
Conread position:
               
1-183
               

               
Cow position:
               
chr11:69075846-69076022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
1-197
               

               
Cow position:
               
chr11:30954937-30955128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
188, 18
               

               
Conread position:
               
1-228
               

               
Cow position:
               
chr11:20238609-20238842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
21, 38
               

               
Conread position:
               
1-228
               

               
Cow position:
               
chr11:42066796-42067030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
69, 47
               

               
Conread position:
               
1-228
               

               
Cow position:
               
chr11:49872949-49872721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
167, 17
               

               
Conread position:
               
1-228
               

               
Cow position:
               
chr11:67614991-67614759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
50, 23
               

               
Conread position:
               
1-228
               

               
Cow position:
               
chr11:75285830-75285590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
62, 24
               

               
Conread position:
               
1-244
               

               
Cow position:
               
chr11:40818700-40818452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
53, 46
               

               
Conread position:
               
1-247
               

               
Cow position:
               
chr11:19946372-19946618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
147, 16
               

               
Conread position:
               
1-253
               

               
Cow position:
               
chr11:71390626-71390381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
220, 46
               

               
Conread position:
               
4-228
               

               
Cow position:
               
chr11:35580197-35580427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
167, 43
               

               
Conread position:
               
5-225
               

               
Cow position:
               
chr11:58927517-58927735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
63, 14
               

               
Conread position:
               
5-228
               

               
Cow position:
               
chr11:15016997-15017224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
157, 31
               

               
Conread position:
               
6-228
               

               
Cow position:
               
chr11:46922952-46922721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
64, 32
               

               
Conread position:
               
7-180
               

               
Cow position:
               
chr11:82731064-82730887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
63, 28
               

               
Conread position:
               
7-211
               

               
Cow position:
               
chr11:30192116-30192329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
159, 51
               

               
Conread position:
               
7-228
               

               
Cow position:
               
chr11:44031947-44032172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
63, 22
               

               
Conread position:
               
7-228
               

               
Cow position:
               
chr11:66041213-66041438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
8, 54
               

               
Conread position:
               
7-249
               

               
Cow position:
               
chr11:35981204-35980954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
63, 18
               

               
Conread position:
               
8-212
               

               
Cow position:
               
chr11:68206902-68206697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
41, 75
               

               
Conread position:
               
8-235
               

               
Cow position:
               
chr11:47724846-47725062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
56, 13
               

               
Conread position:
               
9-187
               

               
Cow position:
               
chr11:11523523-11523341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
49, 19
               

               
Conread position:
               
9-226
               

               
Cow position:
               
chr11:45435022-45435239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
153, 37
               

               
Conread position:
               
9-247
               

               
Cow position:
               
chr11:42160117-42159878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
61, 32
               

               
Conread position:
               
10-178
               

               
Cow position:
               
chr11:48496653-48496486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
58, 37
               

               
Conread position:
               
10-182
               

               
Cow position:
               
chr11:69119232-69119407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
58, 9
               

               
Conread position:
               
10-226
               

               
Cow position:
               
chr11:80923383-80923162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
60, 31
               

               
Conread position:
               
10-228
               

               
Cow position:
               
chr11:41115-41336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
34, 19
               

               
Conread position:
               
10-228
               

               
Cow position:
               
chr11:4637233-4637009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
60, 28
               

               
Conread position:
               
10-228
               

               
Cow position:
               
chr11:13499957-13500176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
64, 20
               

               
Conread position:
               
10-228
               

               
Cow position:
               
chr11:44222826-44223047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
76, 30
               

               
Conread position:
               
10-229
               

               
Cow position:
               
chr11:24601903-24602124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
60, 28
               

               
Conread position:
               
10-231
               

               
Cow position:
               
chr11:64334792-64335000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
97, 19
               

               
Conread position:
               
10-234
               

               
Cow position:
               
chr11:25119993-25119764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
13, 29
               

               
Conread position:
               
10-237
               

               
Cow position:
               
chr11:81162494-81162272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
59, 28
               

               
Conread position:
               
10-238
               

               
Cow position:
               
chr11:34121135-34121371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
15, 32
               

               
Conread position:
               
11-253
               

               
Cow position:
               
chr11:19500855-19500609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
18, 170
               

               
Conread position:
               
12-183
               

               
Cow position:
               
chr11:82289518-82289690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
31, 73
               

               
Conread position:
               
12-228
               

               
Cow position:
               
chr11:16342288-16342082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
57, 26
               

               
Conread position:
               
12-228
               

               
Cow position:
               
chr11:63469816-63470023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
58, 26
               

               
Conread position:
               
12-241
               

               
Cow position:
               
chr11:82940679-82940448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
33, 9
               

               
Conread position:
               
13-158
               

               
Cow position:
               
chr11:53279773-53279628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
30, 12
               

               
Conread position:
               
13-187
               

               
Cow position:
               
chr11:28644026-28644205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
31, 22
               

               
Conread position:
               
14-158
               

               
Cow position:
               
chr11:23128601-23128453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
14-182
               

               
Cow position:
               
chr11:19606520-19606687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
56, 19
               

               
Conread position:
               
15-180
               

               
Cow position:
               
chr11:62609541-62609713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
15-225
               

               
Cow position:
               
chr11:3393270-3393053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
25, 107
               

               
Conread position:
               
16-246
               

               
Cow position:
               
chr11:18851847-18852085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
21, 109
               

               
Conread position:
               
17-253
               

               
Cow position:
               
chr11:19592049-19591802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
57, 18
               

               
Conread position:
               
18-228
               

               
Cow position:
               
chr11:29659501-29659725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
25, 212
               

               
Conread position:
               
18-229
               

               
Cow position:
               
chr11:62663292-62663075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
10, 77
               

               
Conread position:
               
19-174
               

               
Cow position:
               
chr11:34413394-34413237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
28, 9
               

               
Conread position:
               
19-181
               

               
Cow position:
               
chr11:83925993-83926152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
24, 10
               

               
Conread position:
               
19-228
               

               
Cow position:
               
chr11:30964288-30964509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
14, 38
               

               
Conread position:
               
19-228
               

               
Cow position:
               
chr11:81406219-81406001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
24, 41
               

               
Conread position:
               
19-234
               

               
Cow position:
               
chr11:31227906-31228125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
23, 16
               

               
Conread position:
               
19-243
               

               
Cow position:
               
chr11:40395383-40395617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
25, 11
               

               
Conread position:
               
21-183
               

               
Cow position:
               
chr11:42044049-42043885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
8, 57
               

               
Conread position:
               
21-208
               

               
Cow position:
               
chr11:36112370-36112563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
47, 62
               

               
Conread position:
               
21-215
               

               
Cow position:
               
chr11:30830671-30830466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
21-220
               

               
Cow position:
               
chr11:39060657-39060448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
19, 119
               

               
Conread position:
               
21-226
               

               
Cow position:
               
chr11:259225-259013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
21-226
               

               
Cow position:
               
chr11:28993787-28993584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
49, 22
               

               
Conread position:
               
21-228
               

               
Cow position:
               
chr11:30639003-30638786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
21-228
               

               
Cow position:
               
chr11:39249919-39250130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
24, 8
               

               
Conread position:
               
21-228
               

               
Cow position:
               
chr11:42083416-42083619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
11, 65
               

               
Conread position:
               
21-228
               

               
Cow position:
               
chr11:43360832-43360621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
22, 50
               

               
Conread position:
               
21-228
               

               
Cow position:
               
chr11:48085863-48086084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
21-233
               

               
Cow position:
               
chr11:18910934-18910713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
10, 80
               

               
Conread position:
               
21-234
               

               
Cow position:
               
chr11:2917642-2917421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
12, 124
               

               
Conread position:
               
21-234
               

               
Cow position:
               
chr11:49152896-49153112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
44, 76
               

               
Conread position:
               
21-234
               

               
Cow position:
               
chr11:50152871-50152641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
21-235
               

               
Cow position:
               
chr11:17676426-17676202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
21-235
               

               
Cow position:
               
chr11:84890771-84890555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
30, 102
               

               
Conread position:
               
21-239
               

               
Cow position:
               
chr11:46746576-46746806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
22, 180
               

               
Conread position:
               
21-249
               

               
Cow position:
               
chr11:8545068-8544826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
61, 49
               

               
Conread position:
               
21-253
               

               
Cow position:
               
chr11:84385691-84385444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
22, 8
               

               
Conread position:
               
22-183
               

               
Cow position:
               
chr11:7590139-7590302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
23, 53
               

               
Conread position:
               
22-185
               

               
Cow position:
               
chr11:40478904-40478739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
46, 8
               

               
Conread position:
               
22-228
               

               
Cow position:
               
chr11:29960243-29960458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
14, 72
               

               
Conread position:
               
22-249
               

               
Cow position:
               
chr11:21736345-21736121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
208, 18
               

               
Conread position:
               
22-253
               

               
Cow position:
               
chr11:74316657-74316900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
48, 129
               

               
Conread position:
               
23-175
               

               
Cow position:
               
chr11:14466542-14466383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
23-181
               

               
Cow position:
               
chr11:48474651-48474813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
23-183
               

               
Cow position:
               
chr11:16907102-16906939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
17, 64
               

               
Conread position:
               
23-207
               

               
Cow position:
               
chr11:63909715-63909532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
45, 70
               

               
Conread position:
               
23-227
               

               
Cow position:
               
chr11:52690574-52690360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
13, 83
               

               
Conread position:
               
23-228
               

               
Cow position:
               
chr11:62742695-62742482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
5, 69
               

               
Conread position:
               
23-228
               

               
Cow position:
               
chr11:70206268-70206481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
20, 98
               

               
Conread position:
               
23-241
               

               
Cow position:
               
chr11:35536535-35536764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
19, 12
               

               
Conread position:
               
23-244
               

               
Cow position:
               
chr11:71868656-71868423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
21, 202
               

               
Conread position:
               
24-170
               

               
Cow position:
               
chr11:53553167-53553314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
16, 101
               

               
Conread position:
               
24-182
               

               
Cow position:
               
chr11:62150943-62150783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
16, 72
               

               
Conread position:
               
24-183
               

               
Cow position:
               
chr11:40573382-40573224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
46, 61
               

               
Conread position:
               
24-183
               

               
Cow position:
               
chr11:48272148-48272312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
24-190
               

               
Cow position:
               
chr11:41293864-41293699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
43, 6
               

               
Conread position:
               
24-228
               

               
Cow position:
               
chr11:36182638-36182857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
16, 194
               

               
Conread position:
               
24-228
               

               
Cow position:
               
chr11:48295980-48296191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
8, 53
               

               
Conread position:
               
24-228
               

               
Cow position:
               
chr11:52297265-52297057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
45, 6
               

               
Conread position:
               
24-228
               

               
Cow position:
               
chr11:83032629-83032843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
24-234
               

               
Cow position:
               
chr11:49057351-49057555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
19, 61
               

               
Conread position:
               
24-241
               

               
Cow position:
               
chr11:17493427-17493660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
21, 185
               

               
Conread position:
               
24-246
               

               
Cow position:
               
chr11:41313708-41313479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
21, 194
               

               
Conread position:
               
24-253
               

               
Cow position:
               
chr11:23272052-23271812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
44, 181
               

               
Conread position:
               
25-164
               

               
Cow position:
               
chr11:35684551-35684408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
25-167
               

               
Cow position:
               
chr11:47545083-47545226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
15, 69
               

               
Conread position:
               
25-177
               

               
Cow position:
               
chr11:43898092-43898244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
53, 15
               

               
Conread position:
               
25-182
               

               
Cow position:
               
chr11:44036678-44036832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
45, 13
               

               
Conread position:
               
25-183
               

               
Cow position:
               
chr11:43430503-43430344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
43, 71
               

               
Conread position:
               
25-183
               

               
Cow position:
               
chr11:48248267-48248102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
25-211
               

               
Cow position:
               
chr11:8988283-8988088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
17, 90
               

               
Conread position:
               
25-226
               

               
Cow position:
               
chr11:36658869-36658670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
20, 59
               

               
Conread position:
               
25-228
               

               
Cow position:
               
chr11:14470319-14470527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
16, 59
               

               
Conread position:
               
25-228
               

               
Cow position:
               
chr11:63866708-63866495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
25-228
               

               
Cow position:
               
chr11:63999139-63998924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
15, 51
               

               
Conread position:
               
25-253
               

               
Cow position:
               
chr11:63435472-63435713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
26-224
               

               
Cow position:
               
chr11:2925346-2925146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
14, 87
               

               
Conread position:
               
26-228
               

               
Cow position:
               
chr11:13592685-13592905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
27-245
               

               
Cow position:
               
chr11:27565284-27565500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
16, 88
               

               
Conread position:
               
29-228
               

               
Cow position:
               
chr11:8525160-8524952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
11, 70
               

               
Conread position:
               
29-228
               

               
Cow position:
               
chr11:39855059-39854856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
39, 54
               

               
Conread position:
               
29-242
               

               
Cow position:
               
chr11:35669999-35669778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
14, 105
               

               
Conread position:
               
30-218
               

               
Cow position:
               
chr11:70978780-70978584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
13, 118
               

               
Conread position:
               
30-228
               

               
Cow position:
               
chr11:2907569-2907368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
10, 55
               

               
Conread position:
               
30-228
               

               
Cow position:
               
chr11:17227689-17227485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
11, 63
               

               
Conread position:
               
30-228
               

               
Cow position:
               
chr11:39462577-39462785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
30-228
               

               
Cow position:
               
chr11:42182986-42183205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
30-234
               

               
Cow position:
               
chr11:62789085-62789299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
30-244
               

               
Cow position:
               
chr11:85723651-85723875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
13, 215
               

               
Conread position:
               
30-247
               

               
Cow position:
               
chr11:80639595-80639364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
13, 184
               

               
Conread position:
               
32-228
               

               
Cow position:
               
chr11:70250871-70251080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
11, 107
               

               
Conread position:
               
32-229
               

               
Cow position:
               
chr11:29786541-29786326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
35-173
               

               
Cow position:
               
chr11:28168463-28168321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
35-208
               

               
Cow position:
               
chr11:9270764-9270589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
33, 108
               

               
Conread position:
               
35-228
               

               
Cow position:
               
chr11:13061275-13061088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
35, 117
               

               
Conread position:
               
35-228
               

               
Cow position:
               
chr11:73354099-73353901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
35-228
               

               
Cow position:
               
chr11:81135207-81135003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
35-234
               

               
Cow position:
               
chr11:77013743-77013942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
5, 50
               

               
Conread position:
               
35-244
               

               
Cow position:
               
chr11:8437733-8437509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
34, 204
               

               
Conread position:
               
35-244
               

               
Cow position:
               
chr11:10992226-10992444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
37-185
               

               
Cow position:
               
chr11:17638572-17638423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
32, 132
               

               
Conread position:
               
38-183
               

               
Cow position:
               
chr11:33341181-33341032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
38-205
               

               
Cow position:
               
chr11:18706851-18706687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
125, 44
               

               
Conread position:
               
38-228
               

               
Cow position:
               
chr11:15382540-15382329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
39-156
               

               
Cow position:
               
chr11:84490530-84490415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
39-158
               

               
Cow position:
               
chr11:64406193-64406315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
39-164
               

               
Cow position:
               
chr11:13075836-13075719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
39-165
               

               
Cow position:
               
chr11:35874038-35873909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
39-171
               

               
Cow position:
               
chr11:65767164-65767299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
39-173
               

               
Cow position:
               
chr11:44234320-44234457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
39-180
               

               
Cow position:
               
chr11:47882768-47882913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
39-183
               

               
Cow position:
               
chr11:64090132-64089987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
31, 121
               

               
Conread position:
               
39-184
               

               
Cow position:
               
chr11:26845629-26845482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
31, 121
               

               
Conread position:
               
39-184
               

               
Cow position:
               
chr11:35803100-35803251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
28, 52
               

               
Conread position:
               
39-187
               

               
Cow position:
               
chr11:59702451-59702605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
29, 134
               

               
Conread position:
               
39-208
               

               
Cow position:
               
chr11:897638-897812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
39-212
               

               
Cow position:
               
chr11:37425177-37425005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
127, 23
               

               
Conread position:
               
39-219
               

               
Cow position:
               
chr11:11558136-11558327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
39-225
               

               
Cow position:
               
chr11:17083345-17083151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
39-226
               

               
Cow position:
               
chr11:40608629-40608429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
31, 58
               

               
Conread position:
               
39-226
               

               
Cow position:
               
chr11:62620341-62620540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
39-227
               

               
Cow position:
               
chr11:18447527-18447336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
31, 132
               

               
Conread position:
               
39-227
               

               
Cow position:
               
chr11:62239710-62239906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
30, 16
               

               
Conread position:
               
39-228
               

               
Cow position:
               
chr11:1932527-1932322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
39-228
               

               
Cow position:
               
chr11:16801987-16801812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
39-228
               

               
Cow position:
               
chr11:18914990-18915176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
16, 116
               

               
Conread position:
               
39-228
               

               
Cow position:
               
chr11:21885798-21885996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
31, 58
               

               
Conread position:
               
39-228
               

               
Cow position:
               
chr11:24599422-24599232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
28, 83
               

               
Conread position:
               
39-228
               

               
Cow position:
               
chr11:27405105-27404905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
30, 55
               

               
Conread position:
               
39-228
               

               
Cow position:
               
chr11:27746888-27747084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
39-228
               

               
Cow position:
               
chr11:47772425-47772216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
39-228
               

               
Cow position:
               
chr11:47899233-47899416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
31, 123
               

               
Conread position:
               
39-228
               

               
Cow position:
               
chr11:52380907-52380706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
39-228
               

               
Cow position:
               
chr11:55494644-55494830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
31, 128
               

               
Conread position:
               
39-228
               

               
Cow position:
               
chr11:62812985-62812787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
39-228
               

               
Cow position:
               
chr11:65157444-65157239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
39-228
               

               
Cow position:
               
chr11:69977935-69978131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
30, 187
               

               
Conread position:
               
39-228
               

               
Cow position:
               
chr11:72292517-72292727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
39-228
               

               
Cow position:
               
chr11:77319379-77319578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
39-228
               

               
Cow position:
               
chr11:83043398-83043201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
39-235
               

               
Cow position:
               
chr11:34646554-34646768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
39-240
               

               
Cow position:
               
chr11:38211610-38211822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
39-247
               

               
Cow position:
               
chr11:80820038-80819832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
31, 58
               

               
Conread position:
               
39-249
               

               
Cow position:
               
chr11:31352587-31352372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
30, 152
               

               
Conread position:
               
39-252
               

               
Cow position:
               
chr11:15285650-15285429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
35, 145
               

               
Conread position:
               
39-252
               

               
Cow position:
               
chr11:33409297-33409073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
31, 189
               

               
Conread position:
               
39-252
               

               
Cow position:
               
chr11:48544398-48544629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
27, 131
               

               
Conread position:
               
39-252
               

               
Cow position:
               
chr11:67615280-67615059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
30, 10
               

               
Conread position:
               
39-253
               

               
Cow position:
               
chr11:17036563-17036343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
31, 199
               

               
Conread position:
               
40-175
               

               
Cow position:
               
chr11:83230434-83230297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
40-228
               

               
Cow position:
               
chr11:34467536-34467728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
29, 43
               

               
Conread position:
               
41-228
               

               
Cow position:
               
chr11:30895037-30894837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
42-183
               

               
Cow position:
               
chr11:29699732-29699585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
42-183
               

               
Cow position:
               
chr11:53717839-53717694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
42-183
               

               
Cow position:
               
chr11:58173593-58173736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
26, 59
               

               
Conread position:
               
42-201
               

               
Cow position:
               
chr11:65803903-65803741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
26, 157
               

               
Conread position:
               
42-215
               

               
Cow position:
               
chr11:31410910-31410728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
42-216
               

               
Cow position:
               
chr11:11469680-11469500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
42-219
               

               
Cow position:
               
chr11:39499324-39499511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
42-228
               

               
Cow position:
               
chr11:3896731-3896532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
42-228
               

               
Cow position:
               
chr11:5201684-5201480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
42-228
               

               
Cow position:
               
chr11:17721834-17721635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
42-228
               

               
Cow position:
               
chr11:21728308-21728123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
28, 83
               

               
Conread position:
               
42-228
               

               
Cow position:
               
chr11:23407432-23407626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
42-228
               

               
Cow position:
               
chr11:27248461-27248654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
51, 32
               

               
Conread position:
               
42-228
               

               
Cow position:
               
chr11:35213200-35213005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
28, 177
               

               
Conread position:
               
42-228
               

               
Cow position:
               
chr11:66188349-66188155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
28, 109
               

               
Conread position:
               
42-228
               

               
Cow position:
               
chr11:83066465-83066658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
121, 33
               

               
Conread position:
               
42-240
               

               
Cow position:
               
chr11:34113232-34113432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
26, 128
               

               
Conread position:
               
42-251
               

               
Cow position:
               
chr11:82740477-82740684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
28, 125
               

               
Conread position:
               
43-215
               

               
Cow position:
               
chr11:80537457-80537624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
27, 69
               

               
Conread position:
               
43-225
               

               
Cow position:
               
chr11:85271769-85271581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
43-235
               

               
Cow position:
               
chr11:30867152-30867350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
44-162
               

               
Cow position:
               
chr11:22499394-22499276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
25, 52
               

               
Conread position:
               
44-164
               

               
Cow position:
               
chr11:17278702-17278583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
24, 39
               

               
Conread position:
               
44-164
               

               
Cow position:
               
chr11:29946944-29946821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
44-164
               

               
Cow position:
               
chr11:32691001-32690878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
44-178
               

               
Cow position:
               
chr11:47837290-47837426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
44-181
               

               
Cow position:
               
chr11:22747358-22747221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
44-182
               

               
Cow position:
               
chr11:17831251-17831110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
44-183
               

               
Cow position:
               
chr11:56290481-56290623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
44-184
               

               
Cow position:
               
chr11:3234045-3234188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
44-184
               

               
Cow position:
               
chr11:23586608-23586753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
44-187
               

               
Cow position:
               
chr11:17321617-17321770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
26, 67
               

               
Conread position:
               
44-199
               

               
Cow position:
               
chr11:59872900-59873059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
26, 39
               

               
Conread position:
               
44-200
               

               
Cow position:
               
chr11:46427438-46427280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
25, 126
               

               
Conread position:
               
44-208
               

               
Cow position:
               
chr11:20602197-20602363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
24, 79
               

               
Conread position:
               
44-209
               

               
Cow position:
               
chr11:84977389-84977219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
44-216
               

               
Cow position:
               
chr11:11125633-11125821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
44-216
               

               
Cow position:
               
chr11:30493966-30494144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
26, 58
               

               
Conread position:
               
44-216
               

               
Cow position:
               
chr11:34136213-34136394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
113, 104
               

               
Conread position:
               
44-219
               

               
Cow position:
               
chr11:71021970-71022156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
26, 158
               

               
Conread position:
               
44-220
               

               
Cow position:
               
chr11:71492890-71492705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
44-226
               

               
Cow position:
               
chr11:63382221-63382033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
44-228
               

               
Cow position:
               
chr11:375429-375624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
31, 65
               

               
Conread position:
               
44-228
               

               
Cow position:
               
chr11:13043176-13042982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
44-228
               

               
Cow position:
               
chr11:15772742-15772547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
44-228
               

               
Cow position:
               
chr11:27462128-27461945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
20, 53
               

               
Conread position:
               
44-228
               

               
Cow position:
               
chr11:30172279-30172465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
124, 30
               

               
Conread position:
               
44-228
               

               
Cow position:
               
chr11:35109568-35109374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
24, 95
               

               
Conread position:
               
44-228
               

               
Cow position:
               
chr11:38639082-38639265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
30, 15
               

               
Conread position:
               
44-228
               

               
Cow position:
               
chr11:41986076-41985882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
44-228
               

               
Cow position:
               
chr11:53778586-53778786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
44-228
               

               
Cow position:
               
chr11:64044203-64044383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
26, 122
               

               
Conread position:
               
44-228
               

               
Cow position:
               
chr11:64408946-64409132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
24, 39
               

               
Conread position:
               
44-228
               

               
Cow position:
               
chr11:70756452-70756640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
34, 25
               

               
Conread position:
               
44-228
               

               
Cow position:
               
chr11:77705728-77705916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
26, 39
               

               
Conread position:
               
44-229
               

               
Cow position:
               
chr11:18509061-18508862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
44-234
               

               
Cow position:
               
chr11:18698849-18699042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
26, 122
               

               
Conread position:
               
44-234
               

               
Cow position:
               
chr11:62889924-62889720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
44-235
               

               
Cow position:
               
chr11:41603716-41603528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
24, 95
               

               
Conread position:
               
44-239
               

               
Cow position:
               
chr11:27449641-27449454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
122, 30
               

               
Conread position:
               
44-243
               

               
Cow position:
               
chr11:45646623-45646413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
26, 60
               

               
Conread position:
               
44-246
               

               
Cow position:
               
chr11:21844162-21843956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
119, 38
               

               
Conread position:
               
44-246
               

               
Cow position:
               
chr11:51729256-51729457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
24, 125
               

               
Conread position:
               
44-246
               

               
Cow position:
               
chr11:67912181-67911976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
30, 65
               

               
Conread position:
               
45-164
               

               
Cow position:
               
chr11:61454543-61454424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
23, 45
               

               
Conread position:
               
45-173
               

               
Cow position:
               
chr11:377671-377539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
45-183
               

               
Cow position:
               
chr11:50072908-50073049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
45-208
               

               
Cow position:
               
chr11:55052842-55053012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
45-228
               

               
Cow position:
               
chr11:42296649-42296461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
29, 153
               

               
Conread position:
               
45-239
               

               
Cow position:
               
chr11:44636783-44636592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
25, 128
               

               
Conread position:
               
45-241
               

               
Cow position:
               
chr11:30355029-30355223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
25, 134
               

               
Conread position:
               
45-242
               

               
Cow position:
               
chr11:4225068-4225271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
25, 40
               

               
Conread position:
               
45-246
               

               
Cow position:
               
chr11:55761839-55762039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
23, 109
               

               
Conread position:
               
46-171
               

               
Cow position:
               
chr11:73512471-73512344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
22, 114
               

               
Conread position:
               
46-173
               

               
Cow position:
               
chr11:249510-249380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
46-178
               

               
Cow position:
               
chr11:18587624-18587489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
46-188
               

               
Cow position:
               
chr11:67312752-67312897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
46-197
               

               
Cow position:
               
chr11:66572525-66572371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
24, 122
               

               
Conread position:
               
46-224
               

               
Cow position:
               
chr11:9698874-9699051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
22, 37
               

               
Conread position:
               
46-228
               

               
Cow position:
               
chr11:30843047-30842859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
28, 176
               

               
Conread position:
               
46-228
               

               
Cow position:
               
chr11:45631788-45631614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
175, 26
               

               
Conread position:
               
47-228
               

               
Cow position:
               
chr11:78820124-78820315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
21, 54
               

               
Conread position:
               
49-164
               

               
Cow position:
               
chr11:3248731-3248614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
49-167
               

               
Cow position:
               
chr11:32782909-32782788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
49-184
               

               
Cow position:
               
chr11:79019084-79018946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
49-228
               

               
Cow position:
               
chr11:33348212-33348033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
19, 104
               

               
Conread position:
               
49-228
               

               
Cow position:
               
chr11:53318533-53318701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
32, 36
               

               
Conread position:
               
49-228
               

               
Cow position:
               
chr11:67600759-67600944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
49-228
               

               
Cow position:
               
chr11:75874781-75874606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
6, 106
               

               
Conread position:
               
49-245
               

               
Cow position:
               
chr11:72884619-72884422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
21, 49
               

               
Conread position:
               
49-253
               

               
Cow position:
               
chr11:20205877-20205664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
50-183
               

               
Cow position:
               
chr11:83579200-83579065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
50-216
               

               
Cow position:
               
chr11:84764012-84764175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
20, 41
               

               
Conread position:
               
50-228
               

               
Cow position:
               
chr11:3175649-3175834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
20, 179
               

               
Conread position:
               
51-234
               

               
Cow position:
               
chr11:63165670-63165479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
53-228
               

               
Cow position:
               
chr11:6194384-6194554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
17, 30
               

               
Conread position:
               
55-183
               

               
Cow position:
               
chr11:8107425-8107556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
15, 54
               

               
Conread position:
               
55-228
               

               
Cow position:
               
chr11:58185865-58186038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
19, 126
               

               
Conread position:
               
56-216
               

               
Cow position:
               
chr11:905401-905241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
14, 105
               

               
Conread position:
               
57-228
               

               
Cow position:
               
chr11:48315414-48315233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
58-227
               

               
Cow position:
               
chr11:63478361-63478527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
12, 51
               

               
Conread position:
               
59-228
               

               
Cow position:
               
chr11:15607987-15607823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
11, 40
               

               
Conread position:
               
62-228
               

               
Cow position:
               
chr11:62483970-62483808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
159, 17
               

               
Conread position:
               
62-234
               

               
Cow position:
               
chr11:77241692-77241874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
63-228
               

               
Cow position:
               
chr11:25722004-25721839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
19, 46
               

               
Conread position:
               
64-183
               

               
Cow position:
               
chr11:1071097-1070977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
100, 10
               

               
Conread position:
               
64-228
               

               
Cow position:
               
chr11:66685912-66685744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
42, 11
               

               
Conread position:
               
65-228
               

               
Cow position:
               
chr11:2484801-2484630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
105, 29
               

               
Conread position:
               
67-216
               

               
Cow position:
               
chr11:33993161-33993307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
7, 85
               

               
Conread position:
               
69-235
               

               
Cow position:
               
chr11:25320183-25320337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
152, 97
               

               
Conread position:
               
70-228
               

               
Cow position:
               
chr11:54872760-54872595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
65, 13
               

               
Conread position:
               
70-228
               

               
Cow position:
               
chr11:84968376-84968531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
19, 9
               

               
Conread position:
               
70-252
               

               
Cow position:
               
chr11:75918587-75918768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
34, 92
               

               
Conread position:
               
72-206
               

               
Cow position:
               
chr11:69139949-69139813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
11, 28
               

               
Conread position:
               
73-181
               

               
Cow position:
               
chr11:31885724-31885832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
109
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
73-192
               

               
Cow position:
               
chr11:35860584-35860700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
73-220
               

               
Cow position:
               
chr11:15366971-15366821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
73-224
               

               
Cow position:
               
chr11:49396524-49396364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
73-224
               

               
Cow position:
               
chr11:62566844-62566990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
148, 16
               

               
Conread position:
               
73-228
               

               
Cow position:
               
chr11:7571626-7571786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
73-228
               

               
Cow position:
               
chr11:49149050-49149212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
73-228
               

               
Cow position:
               
chr11:51196081-51195931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
148, 93
               

               
Conread position:
               
73-234
               

               
Cow position:
               
chr11:80586276-80586438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
148, 0
               

               
Conread position:
               
73-235
               

               
Cow position:
               
chr11:22884415-22884579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
95, 17
               

               
Conread position:
               
73-247
               

               
Cow position:
               
chr11:9699243-9699071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
148, 107
               

               
Conread position:
               
73-252
               

               
Cow position:
               
chr11:67948740-67948564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
157, 90
               

               
Conread position:
               
74-228
               

               
Cow position:
               
chr11:80296850-80296693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
77, 149
               

               
Conread position:
               
74-245
               

               
Cow position:
               
chr11:49207713-49207894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
92, 26
               

               
Conread position:
               
74-253
               

               
Cow position:
               
chr11:81066047-81065856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
84, 65
               

               
Conread position:
               
75-217
               

               
Cow position:
               
chr11:79707717-79707857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
109, 46
               

               
Conread position:
               
75-228
               

               
Cow position:
               
chr11:46784478-46784629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
146, 25
               

               
Conread position:
               
75-228
               

               
Cow position:
               
chr11:77227542-77227696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
83, 108
               

               
Conread position:
               
75-247
               

               
Cow position:
               
chr11:63484941-63485116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
89, 164
               

               
Conread position:
               
75-247
               

               
Cow position:
               
chr11:66104392-66104209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
36, 172
               

               
Conread position:
               
75-253
               

               
Cow position:
               
chr11:45671366-45671190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
146, 89
               

               
Conread position:
               
76-241
               

               
Cow position:
               
chr11:19508264-19508422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
154, 14
               

               
Conread position:
               
79-183
               

               
Cow position:
               
chr11:56895967-56895864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
105
               

               
Alignm identity:
               
85
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
79-228
               

               
Cow position:
               
chr11:68905069-68904922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
137, 78
               

               
Conread position:
               
79-253
               

               
Cow position:
               
chr11:4621423-4621241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
81-228
               

               
Cow position:
               
chr11:30857047-30857201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
81-228
               

               
Cow position:
               
chr11:74839620-74839769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
87, 141
               

               
Conread position:
               
81-241
               

               
Cow position:
               
chr11:4411859-4411696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
89, 151
               

               
Conread position:
               
83-183
               

               
Cow position:
               
chr11:58228627-58228727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
101
               

               
Alignm identity:
               
82
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
83-228
               

               
Cow position:
               
chr11:75388363-75388211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
83-246
               

               
Cow position:
               
chr11:13684699-13684534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
138, 96
               

               
Conread position:
               
83-253
               

               
Cow position:
               
chr11:63221365-63221529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
153, 44
               

               
Conread position:
               
83-253
               

               
Cow position:
               
chr11:69676341-69676161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
24, 125
               

               
Conread position:
               
83-253
               

               
Cow position:
               
chr11:71814718-71814896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
84-218
               

               
Cow position:
               
chr11:37041984-37042129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
84-225
               

               
Cow position:
               
chr11:72401720-72401572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
85-246
               

               
Cow position:
               
chr11:42206435-42206608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
86-212
               

               
Cow position:
               
chr11:83249417-83249548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
86-228
               

               
Cow position:
               
chr11:15591460-15591314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
86-228
               

               
Cow position:
               
chr11:48247047-48246910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
136, 73
               

               
Conread position:
               
86-228
               

               
Cow position:
               
chr11:56114955-56115103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
86-228
               

               
Cow position:
               
chr11:78672685-78672837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
87-254
               

               
Cow position:
               
chr11:53487138-53486966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
81, 61
               

               
Conread position:
               
88-212
               

               
Cow position:
               
chr11:43965861-43965736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
72, 63
               

               
Conread position:
               
91-208
               

               
Cow position:
               
chr11:18210154-18210038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
91-226
               

               
Cow position:
               
chr11:7617187-7617044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
91-228
               

               
Cow position:
               
chr11:8422098-8421959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
91-243
               

               
Cow position:
               
chr11:65495320-65495164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
73, 149
               

               
Conread position:
               
94-253
               

               
Cow position:
               
chr11:65565104-65564946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
127, 72
               

               
Conread position:
               
97-220
               

               
Cow position:
               
chr11:62081942-62081815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
97-228
               

               
Cow position:
               
chr11:30986664-30986802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
98-244
               

               
Cow position:
               
chr11:75915020-75915166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
86, 72
               

               
Conread position:
               
98-253
               

               
Cow position:
               
chr11:63483969-63484136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
101-228
               

               
Cow position:
               
chr11:81340511-81340378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
102-228
               

               
Cow position:
               
chr11:1841994-1842123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
104-246
               

               
Cow position:
               
chr11:25209429-25209569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
60, 15
               

               
Conread position:
               
105-228
               

               
Cow position:
               
chr11:33289429-33289303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
82, 52
               

               
Conread position:
               
105-228
               

               
Cow position:
               
chr11:57170565-57170444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
116, 50
               
Show alignments to all cow chromosomes.