Cow genome map

Conread name: OvF4-UMC-p4mm3-014-a01

Conread position: 18-255
Cow position: chr25:17992733-17992969 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 176
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 5, 16

Conread position: 22-255
Cow position: chr25:40321883-40322112 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 169
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 11, 27

Conread position: 28-225
Cow position: chr25:4372311-4372512 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 155
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 152, 6

Conread position: 30-255
Cow position: chr25:9595715-9595494 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 165
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 147, 19

Conread position: 30-255
Cow position: chr25:29802343-29802567 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 167
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 146, 19

Conread position: 30-255
Cow position: chr25:41097796-41098020 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 166
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 147, 19

Conread position: 32-232
Cow position: chr25:27231747-27231556 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 144
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 156, 17

Conread position: 32-248
Cow position: chr25:15005468-15005258 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 148
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 148, 17

Conread position: 32-248
Cow position: chr25:16922396-16922606 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 167
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 13, 39

Conread position: 32-248
Cow position: chr25:23325626-23325843 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 165
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 26, 32

Conread position: 32-248
Cow position: chr25:25510289-25510074 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 163
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 145, 14

Conread position: 32-255
Cow position: chr25:9395811-9395587 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 176
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 121, 17

Conread position: 32-255
Cow position: chr25:13960459-13960240 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 167
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 145, 17

Conread position: 32-255
Cow position: chr25:18189979-18190200 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 162
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 144, 17

Conread position: 32-255
Cow position: chr25:18323959-18324179 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 169
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 145, 17

Conread position: 32-255
Cow position: chr25:19336927-19337149 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 161
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 144, 17

Conread position: 32-255
Cow position: chr25:24302867-24303089 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 164
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 146, 8

Conread position: 32-255
Cow position: chr25:26282424-26282202 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 166
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 145, 17

Conread position: 32-255
Cow position: chr25:34343510-34343730 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 163
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 147, 14

Conread position: 32-255
Cow position: chr25:35567490-35567708 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 159
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 151, 17

Conread position: 32-255
Cow position: chr25:35612938-35613158 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 169
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 156, 17

Conread position: 32-256
Cow position: chr25:11666062-11665840 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 180
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 156, 26

Conread position: 32-256
Cow position: chr25:37967362-37967138 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 164
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 102, 17

Conread position: 34-228
Cow position: chr25:11044013-11043820 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 144
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 140, 15

Conread position: 36-227
Cow position: chr25:33979013-33979203 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 146
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 133, 12

Conread position: 36-243
Cow position: chr25:13429721-13429922 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 155
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 145, 12

Conread position: 42-246
Cow position: chr25:10012667-10012875 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 155
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 121, 6

Conread position: 43-248
Cow position: chr25:20613921-20613720 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 150
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 122, 28

Conread position: 43-255
Cow position: chr25:29312937-29313143 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 158
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 125, 27

Conread position: 48-234
Cow position: chr25:25480234-25480411 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 139
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 8, 18

Conread position: 58-255
Cow position: chr25:25826831-25826628 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 154
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 5, 35

Conread position: 61-262
Cow position: chr25:40141130-40141333 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 151
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 109, 31

Conread position: 62-221
Cow position: chr25:11662410-11662573 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 130
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 66, 30

Conread position: 62-243
Cow position: chr25:39386459-39386639 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 133
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 121, 30

Conread position: 62-248
Cow position: chr25:9055032-9054847 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 149
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 113, 28

Conread position: 62-248
Cow position: chr25:17657985-17657804 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 142
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 30, 0

Conread position: 62-248
Cow position: chr25:20495909-20495729 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 135
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 30, 0

Conread position: 62-248
Cow position: chr25:22760265-22760078 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 142
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 103, 30

Conread position: 62-255
Cow position: chr25:4522441-4522633 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 157
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 112, 32

Conread position: 62-255
Cow position: chr25:18072592-18072403 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 137
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 31, 0

Conread position: 62-255
Cow position: chr25:18265563-18265365 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 146
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 102, 30

Conread position: 62-255
Cow position: chr25:22151478-22151283 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 143
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 115, 30

Conread position: 62-255
Cow position: chr25:23394235-23394043 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 144
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 126, 31

Conread position: 62-255
Cow position: chr25:28275298-28275490 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 144
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 115, 30

Conread position: 62-255
Cow position: chr25:28863242-28863050 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 146
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 115, 30

Conread position: 62-255
Cow position: chr25:33687836-33688029 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 143
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 126, 15

Conread position: 62-255
Cow position: chr25:34508809-34509004 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 146
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 114, 30

Conread position: 62-255
Cow position: chr25:41121374-41121182 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 143
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 121, 30

Conread position: 62-256
Cow position: chr25:12081984-12082174 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 152
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 110, 30

Conread position: 62-256
Cow position: chr25:18129574-18129377 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 156
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 66, 28

Conread position: 62-256
Cow position: chr25:41135378-41135571 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 156
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 121, 30

Conread position: 62-264
Cow position: chr25:21950501-21950295 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 154
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 121, 30

Conread position: 63-248
Cow position: chr25:7800388-7800202 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 150
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 113, 29

Conread position: 63-255
Cow position: chr25:9647324-9647136 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 139
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 29, 0

Conread position: 64-219
Cow position: chr25:36512645-36512488 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 126
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 122, 28

Conread position: 64-246
Cow position: chr25:34768051-34767866 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 145
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 112, 28

Conread position: 64-248
Cow position: chr25:21903808-21903623 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 136
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 109, 26

Conread position: 64-255
Cow position: chr25:3688506-3688313 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 150
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 112, 28

Conread position: 64-255
Cow position: chr25:4858127-4858321 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 144
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 112, 28

Conread position: 64-255
Cow position: chr25:8655660-8655469 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 146
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 112, 28

Conread position: 64-255
Cow position: chr25:8935167-8934974 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 150
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 112, 28

Conread position: 64-255
Cow position: chr25:15453387-15453194 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 150
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 112, 28

Conread position: 64-255
Cow position: chr25:16430647-16430840 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 141
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 113, 28

Conread position: 64-255
Cow position: chr25:17210763-17210956 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 148
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 112, 28

Conread position: 64-255
Cow position: chr25:17808408-17808601 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 148
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 112, 28

Conread position: 64-255
Cow position: chr25:17905011-17904818 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 147
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 112, 28

Conread position: 64-255
Cow position: chr25:17994152-17994345 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 147
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 112, 28

Conread position: 64-255
Cow position: chr25:18486829-18486637 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 151
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 124, 27

Conread position: 64-255
Cow position: chr25:19139201-19139394 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 147
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 112, 28

Conread position: 64-255
Cow position: chr25:19923892-19923699 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 147
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 112, 28

Conread position: 64-255
Cow position: chr25:21120684-21120487 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 145
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 64, 28

Conread position: 64-255
Cow position: chr25:21966760-21966567 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 145
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 112, 28

Conread position: 64-255
Cow position: chr25:26705511-26705704 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 147
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 112, 28

Conread position: 64-255
Cow position: chr25:26780715-26780908 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 143
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 112, 29

Conread position: 64-255
Cow position: chr25:27076429-27076239 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 144
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 112, 28

Conread position: 64-255
Cow position: chr25:27145793-27145603 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 140
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 119, 28

Conread position: 64-255
Cow position: chr25:28264717-28264525 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 145
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 112, 28

Conread position: 64-255
Cow position: chr25:29525496-29525689 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 146
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 112, 28

Conread position: 64-255
Cow position: chr25:32610049-32610242 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 148
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 112, 28

Conread position: 64-255
Cow position: chr25:34121724-34121918 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 146
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 112, 28

Conread position: 64-255
Cow position: chr25:34164191-34164384 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 148
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 110, 28

Conread position: 64-255
Cow position: chr25:36127537-36127729 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 142
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 112, 28

Conread position: 64-255
Cow position: chr25:36351109-36350916 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 143
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 112, 28

Conread position: 64-257
Cow position: chr25:2370000-2369799 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 148
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 99, 29

Conread position: 65-248
Cow position: chr25:20006527-20006335 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 147
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 98, 27

Conread position: 65-252
Cow position: chr25:13961923-13961734 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 142
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 112, 27

Conread position: 65-255
Cow position: chr25:11956195-11956009 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 149
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 109, 21

Conread position: 65-255
Cow position: chr25:35589447-35589255 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 147
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 111, 27

Conread position: 67-245
Cow position: chr25:33263003-33262817 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 142
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 56, 19

Conread position: 67-255
Cow position: chr25:12938839-12939029 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 143
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 115, 25

Conread position: 68-255
Cow position: chr25:13941368-13941556 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 135
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 109, 24

Conread position: 69-255
Cow position: chr25:27609531-27609346 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 133
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 95, 23

Conread position: 78-247
Cow position: chr25:37469158-37468999 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 127
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 12, 0

Conread position: 80-248
Cow position: chr25:24776707-24776541 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 131
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 92, 12

Conread position: 82-255
Cow position: chr25:22576474-22576644 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 127
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 99, 10

Conread position: 109-255
Cow position: chr25:11125095-11124944 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 116
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 67, 57

Conread position: 109-256
Cow position: chr25:9957453-9957598 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 111
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 47, 0

Conread position: 117-255
Cow position: chr25:23366988-23366845 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 109
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 53, 0

Show alignments to all cow chromosomes.