Cow genome map
| Conread name: | OvF6-UMC-p6mm3-003-h04 |
| Conread position: | 85-265 |
| Cow position: | chr25:13049309-13049134 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 13, 6 |
| Conread position: | 85-292 |
| Cow position: | chr25:9269342-9269533 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 83, 36 |
| Conread position: | 90-293 |
| Cow position: | chr25:1763086-1763278 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 90-293 |
| Cow position: | chr25:12097839-12098031 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 121, 59 |
| Conread position: | 93-292 |
| Cow position: | chr25:16921795-16921600 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 107, 57 |
| Conread position: | 93-293 |
| Cow position: | chr25:30319447-30319254 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 141 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 116, 10 |
| Conread position: | 94-284 |
| Cow position: | chr25:13443408-13443222 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 31, 27 |
| Conread position: | 94-285 |
| Cow position: | chr25:7380836-7380652 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 94-285 |
| Cow position: | chr25:20008135-20008320 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 140 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 19, 58 |
| Conread position: | 94-291 |
| Cow position: | chr25:21501043-21500850 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 84, 58 |
| Conread position: | 94-291 |
| Cow position: | chr25:36369822-36370013 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 144 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 94-291 |
| Cow position: | chr25:36375513-36375704 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 144 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 94-292 |
| Cow position: | chr25:5846806-5846612 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 106, 54 |
| Conread position: | 94-293 |
| Cow position: | chr25:5807948-5808142 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 94-293 |
| Cow position: | chr25:7726665-7726859 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 94-293 |
| Cow position: | chr25:12305279-12305473 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 94-293 |
| Cow position: | chr25:14225365-14225561 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 115, 66 |
| Conread position: | 94-293 |
| Cow position: | chr25:17658614-17658806 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 94-293 |
| Cow position: | chr25:18551331-18551139 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 94-293 |
| Cow position: | chr25:36873053-36872861 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 145 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 94-294 |
| Cow position: | chr25:18201923-18201734 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 95-293 |
| Cow position: | chr25:24115312-24115121 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 97-286 |
| Cow position: | chr25:18646591-18646767 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 97-287 |
| Cow position: | chr25:17474506-17474324 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 97-287 |
| Cow position: | chr25:23323496-23323685 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 125, 55 |
| Conread position: | 97-291 |
| Cow position: | chr25:33686679-33686490 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 97-292 |
| Cow position: | chr25:26087525-26087711 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 146 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 12, 39 |
| Conread position: | 97-293 |
| Cow position: | chr25:433042-432854 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 97-293 |
| Cow position: | chr25:14164205-14164392 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 97-293 |
| Cow position: | chr25:17724218-17724026 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 134 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 43, 56 |
| Conread position: | 97-293 |
| Cow position: | chr25:18491044-18491231 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 97-293 |
| Cow position: | chr25:31514187-31514378 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 150 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 97-294 |
| Cow position: | chr25:30816895-30817087 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 98-284 |
| Cow position: | chr25:6258890-6259069 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 89, 59 |
| Conread position: | 98-284 |
| Cow position: | chr25:6474080-6473891 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 121, 54 |
| Conread position: | 98-285 |
| Cow position: | chr25:40904823-40904641 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 142, 64 |
| Conread position: | 98-292 |
| Cow position: | chr25:17918981-17919170 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 24, 28 |
| Conread position: | 98-294 |
| Cow position: | chr25:7403334-7403143 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 101-293 |
| Cow position: | chr25:22373480-22373292 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 142 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 148, 59 |
| Conread position: | 102-293 |
| Cow position: | chr25:35052611-35052424 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 164, 33 |
| Conread position: | 102-294 |
| Cow position: | chr25:7277314-7277130 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 140 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 102-294 |
| Cow position: | chr25:33311315-33311128 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 103-292 |
| Cow position: | chr25:11857975-11857793 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 108-292 |
| Cow position: | chr25:11956821-11956997 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 138 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 109-294 |
| Cow position: | chr25:1838259-1838438 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 112-291 |
| Cow position: | chr25:33100596-33100764 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 112-291 |
| Cow position: | chr25:36155839-36156003 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 68, 39 |
| Conread position: | 112-292 |
| Cow position: | chr25:37965278-37965456 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 131 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 70, 50 |
| Conread position: | 113-290 |
| Cow position: | chr25:26989219-26989392 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 105, 36 |
| Conread position: | 113-293 |
| Cow position: | chr25:7311374-7311200 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 115-292 |
| Cow position: | chr25:35802639-35802470 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 107, 39 |
| Conread position: | 117-280 |
| Cow position: | chr25:11855523-11855366 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 129 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 124-294 |
| Cow position: | chr25:3141536-3141696 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 124-294 |
| Cow position: | chr25:8411001-8410838 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 125-293 |
| Cow position: | chr25:15999518-15999356 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 124 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 58, 27 |
| Conread position: | 137-294 |
| Cow position: | chr25:20018190-20018341 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 165-266 |
| Cow position: | chr25:18568148-18568047 (view UCSC Genome Browser custom track) |
| Alignm length: | 102 |
| Alignm identity: | 87 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 165-274 |
| Cow position: | chr25:22203630-22203522 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 88 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 165-282 |
| Cow position: | chr25:7622888-7623005 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 90 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 165-292 |
| Cow position: | chr25:37648850-37648975 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 100 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 165-293 |
| Cow position: | chr25:9494774-9494903 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 165-293 |
| Cow position: | chr25:11096170-11096041 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 101 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 13, 6 |
| Conread position: | 165-293 |
| Cow position: | chr25:17725104-17725229 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 165-293 |
| Cow position: | chr25:21547226-21547351 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 98 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 165-293 |
| Cow position: | chr25:22154093-22154225 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 165-293 |
| Cow position: | chr25:22642333-22642467 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 108 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 165-294 |
| Cow position: | chr25:7185207-7185078 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 96 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 165-294 |
| Cow position: | chr25:19849933-19850060 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 101 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 44, 103 |
| Conread position: | 165-294 |
| Cow position: | chr25:28940072-28939945 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 102 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 177-291 |
| Cow position: | chr25:17119823-17119936 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 90 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 187-293 |
| Cow position: | chr25:30462232-30462127 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 90 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 187-293 |
| Cow position: | chr25:33272726-33272832 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 88 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 196-292 |
| Cow position: | chr25:32666352-32666447 (view UCSC Genome Browser custom track) |
| Alignm length: | 97 |
| Alignm identity: | 83 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 18, 0 |
Show alignments to all cow chromosomes.