Cow genome map
| Conread name: | OvF8-UMC-p8mm4-010-g11 |
| Conread position: | 1-158 |
| Cow position: | chr5:48250563-48250412 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 139, 32 |
| Conread position: | 1-159 |
| Cow position: | chr5:20657042-20656890 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 22, 32 |
| Conread position: | 1-253 |
| Cow position: | chr5:25483540-25483291 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 196 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 142, 34 |
| Conread position: | 1-274 |
| Cow position: | chr5:47761589-47761844 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 27, 55 |
| Conread position: | 1-274 |
| Cow position: | chr5:60183022-60182761 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 206 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 22, 33 |
| Conread position: | 1-355 |
| Cow position: | chr5:43156529-43156186 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 106 |
| Conread position: | 1-360 |
| Cow position: | chr5:65144079-65144441 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 260 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 244, 34 |
| Conread position: | 1-364 |
| Cow position: | chr5:8771087-8770719 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 251 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 25, 101 |
| Conread position: | 1-364 |
| Cow position: | chr5:60916666-60917043 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 107 |
| Conread position: | 1-365 |
| Cow position: | chr5:21460321-21459970 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 32 |
| Conread position: | 1-365 |
| Cow position: | chr5:22185602-22185976 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 33 |
| Conread position: | 1-365 |
| Cow position: | chr5:45143579-45143211 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 36 |
| Conread position: | 1-365 |
| Cow position: | chr5:47491061-47491433 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 34 |
| Conread position: | 1-365 |
| Cow position: | chr5:47724447-47724821 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 35 |
| Conread position: | 1-365 |
| Cow position: | chr5:48052189-48052562 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 34 |
| Conread position: | 1-365 |
| Cow position: | chr5:60125028-60124660 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 33 |
| Conread position: | 1-365 |
| Cow position: | chr5:74616870-74617250 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 33 |
| Conread position: | 1-368 |
| Cow position: | chr5:19683413-19683801 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 106 |
| Conread position: | 2-154 |
| Cow position: | chr5:33983314-33983459 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 138, 33 |
| Conread position: | 2-238 |
| Cow position: | chr5:69122141-69122386 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 2-365 |
| Cow position: | chr5:33910835-33910463 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 33 |
| Conread position: | 3-238 |
| Cow position: | chr5:44490789-44490558 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 20, 98 |
| Conread position: | 3-253 |
| Cow position: | chr5:14095057-14094828 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 187 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 242, 37 |
| Conread position: | 3-365 |
| Cow position: | chr5:32087563-32087188 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 104 |
| Conread position: | 4-274 |
| Cow position: | chr5:50994844-50995113 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 29 |
| Conread position: | 5-365 |
| Cow position: | chr5:13198762-13198385 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 51 |
| Conread position: | 22-268 |
| Cow position: | chr5:49908277-49908523 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 85 |
| Conread position: | 22-287 |
| Cow position: | chr5:3712910-3713171 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 199 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 118, 20 |
| Conread position: | 37-365 |
| Cow position: | chr5:46730515-46730864 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 252 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 103, 74 |
| Conread position: | 63-365 |
| Cow position: | chr5:15604127-15603829 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 43 |
| Conread position: | 72-365 |
| Cow position: | chr5:14855841-14855534 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 232 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 66, 34 |
| Conread position: | 77-274 |
| Cow position: | chr5:11443909-11444102 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 148 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 65, 35 |
| Conread position: | 84-268 |
| Cow position: | chr5:64123162-64122978 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 145 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 57, 22 |
| Conread position: | 112-364 |
| Cow position: | chr5:36405857-36406126 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 112-364 |
| Cow position: | chr5:55295293-55295029 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 89 |
| Conread position: | 113-366 |
| Cow position: | chr5:44912199-44912478 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 215 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 23, 89 |
| Conread position: | 116-365 |
| Cow position: | chr5:64066787-64066533 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 44, 28 |
| Conread position: | 148-365 |
| Cow position: | chr5:48499617-48499388 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 169 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 12, 51 |
| Conread position: | 158-365 |
| Cow position: | chr5:15480589-15480371 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 80, 40 |
| Conread position: | 159-365 |
| Cow position: | chr5:48249551-48249353 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 155 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 94, 38 |
Show alignments to all cow chromosomes.