Cow genome map
| Conread name: | Ova1-OVR010003H11 |
| Conread position: | 1-394 |
| Cow position: | chr12:39465709-39465308 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 143 |
| Conread position: | 1-457 |
| Cow position: | chr12:34465874-34466330 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 313 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 81, 71 |
| Conread position: | 1-485 |
| Cow position: | chr12:18577971-18577486 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 243 |
| Conread position: | 1-510 |
| Cow position: | chr12:17001385-17000875 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 260 |
| Conread position: | 1-556 |
| Cow position: | chr12:30170796-30170229 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 81 |
| Conread position: | 43-356 |
| Cow position: | chr12:24663196-24662883 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 54, 36 |
| Conread position: | 43-602 |
| Cow position: | chr12:35368725-35368149 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 37 |
| Conread position: | 45-516 |
| Cow position: | chr12:10895472-10895941 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 33 |
| Conread position: | 46-368 |
| Cow position: | chr12:29770499-29770817 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 235 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 16, 34 |
| Conread position: | 46-602 |
| Cow position: | chr12:9143467-9142913 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 34 |
| Conread position: | 53-502 |
| Cow position: | chr12:25561441-25560992 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 26 |
| Conread position: | 60-433 |
| Cow position: | chr12:18518738-18518361 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 19 |
| Conread position: | 60-554 |
| Cow position: | chr12:41084124-41083621 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 115 |
| Conread position: | 64-248 |
| Cow position: | chr12:3092519-3092699 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 123, 15 |
| Conread position: | 65-420 |
| Cow position: | chr12:5906116-5905760 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 15 |
| Conread position: | 65-514 |
| Cow position: | chr12:15429536-15429991 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 15 |
| Conread position: | 65-602 |
| Cow position: | chr12:11056936-11056412 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 13 |
| Conread position: | 67-550 |
| Cow position: | chr12:39486485-39486007 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 20 |
| Conread position: | 68-243 |
| Cow position: | chr12:16670326-16670144 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 72, 82 |
| Conread position: | 79-362 |
| Cow position: | chr12:27037402-27037686 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 174 |
| Conread position: | 79-590 |
| Cow position: | chr12:31228620-31228109 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 40 |
| Conread position: | 80-235 |
| Cow position: | chr12:17269849-17269686 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 70, 60 |
| Conread position: | 80-264 |
| Cow position: | chr12:9766830-9767020 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 60, 67 |
| Conread position: | 80-274 |
| Cow position: | chr12:46120785-46120986 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 80-279 |
| Cow position: | chr12:37169899-37170104 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 117, 137 |
| Conread position: | 80-331 |
| Cow position: | chr12:25452400-25452655 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 102, 198 |
| Conread position: | 80-340 |
| Cow position: | chr12:25444961-25444701 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 188 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 46, 39 |
| Conread position: | 80-384 |
| Cow position: | chr12:5635406-5635708 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 220 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 107, 131 |
| Conread position: | 80-394 |
| Cow position: | chr12:29779867-29780172 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 213 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 189, 114 |
| Conread position: | 80-394 |
| Cow position: | chr12:30661903-30662220 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 7, 11 |
| Conread position: | 80-411 |
| Cow position: | chr12:19502381-19502708 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 160 |
| Conread position: | 80-418 |
| Cow position: | chr12:26222943-26223279 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 249 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 60, 86 |
| Conread position: | 80-427 |
| Cow position: | chr12:4866864-4866512 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 243 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 119, 113 |
| Conread position: | 80-440 |
| Cow position: | chr12:32715091-32714718 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 39 |
| Conread position: | 80-444 |
| Cow position: | chr12:9229453-9229805 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 253 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 45, 39 |
| Conread position: | 80-540 |
| Cow position: | chr12:30605119-30605560 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 26 |
| Conread position: | 80-561 |
| Cow position: | chr12:34673293-34673767 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 137 |
| Conread position: | 80-590 |
| Cow position: | chr12:18123716-18123219 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 487, 102 |
| Conread position: | 80-602 |
| Cow position: | chr12:7884634-7885129 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 167 |
| Conread position: | 80-602 |
| Cow position: | chr12:15531101-15530570 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 15 |
| Conread position: | 80-602 |
| Cow position: | chr12:37770917-37770390 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 61 |
| Conread position: | 80-603 |
| Cow position: | chr12:18943611-18944134 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 183 |
| Conread position: | 80-606 |
| Cow position: | chr12:11836281-11835756 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 244 |
| Conread position: | 81-276 |
| Cow position: | chr12:24032542-24032343 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 65, 56 |
| Conread position: | 81-414 |
| Cow position: | chr12:32169586-32169245 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 59 |
| Conread position: | 81-545 |
| Cow position: | chr12:5631836-5632296 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 47 |
| Conread position: | 82-299 |
| Cow position: | chr12:19507682-19507451 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 107, 194 |
| Conread position: | 83-486 |
| Cow position: | chr12:47804200-47803792 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 23 |
| Conread position: | 83-522 |
| Cow position: | chr12:16543536-16543975 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 301 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 34, 91 |
| Conread position: | 84-476 |
| Cow position: | chr12:33323453-33323851 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 35 |
| Conread position: | 84-549 |
| Cow position: | chr12:1889535-1890014 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 308 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 41, 35 |
| Conread position: | 84-561 |
| Cow position: | chr12:15089558-15089053 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 22 |
| Conread position: | 90-420 |
| Cow position: | chr12:16605636-16605943 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 240 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 54, 46 |
| Conread position: | 90-420 |
| Cow position: | chr12:22882093-22881755 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 235 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 78, 204 |
| Conread position: | 90-469 |
| Cow position: | chr12:45820329-45820703 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 158 |
| Conread position: | 90-579 |
| Cow position: | chr12:8075656-8076151 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 113 |
| Conread position: | 90-603 |
| Cow position: | chr12:42602206-42602718 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 168 |
| Conread position: | 92-394 |
| Cow position: | chr12:25177563-25177864 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 234 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 145, 50 |
| Conread position: | 92-563 |
| Cow position: | chr12:29969614-29969139 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 27 |
| Conread position: | 94-407 |
| Cow position: | chr12:18388256-18388566 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 130 |
| Conread position: | 95-429 |
| Cow position: | chr12:730904-731231 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 232 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 87, 79 |
| Conread position: | 96-394 |
| Cow position: | chr12:43942507-43942210 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 227 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 34, 53 |
| Conread position: | 96-428 |
| Cow position: | chr12:37993701-37994030 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 95 |
| Conread position: | 97-361 |
| Cow position: | chr12:35669440-35669703 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 48, 197 |
| Conread position: | 100-419 |
| Cow position: | chr12:41091560-41091233 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 225 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 97, 154 |
| Conread position: | 101-553 |
| Cow position: | chr12:27803024-27803475 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 18 |
| Conread position: | 101-604 |
| Cow position: | chr12:15258691-15259198 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 337 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 23, 17 |
| Conread position: | 102-598 |
| Cow position: | chr12:17080285-17079784 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 130 |
| Conread position: | 106-596 |
| Cow position: | chr12:18420901-18421401 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 211 |
| Conread position: | 128-333 |
| Cow position: | chr12:38454908-38454704 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 162 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 66, 126 |
| Conread position: | 133-421 |
| Cow position: | chr12:26317459-26317161 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 14, 7 |
| Conread position: | 149-429 |
| Cow position: | chr12:29411511-29411790 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 218 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 38, 109 |
| Conread position: | 152-345 |
| Cow position: | chr12:18021567-18021372 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 53, 157 |
| Conread position: | 441-602 |
| Cow position: | chr12:8718437-8718598 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.