Cow genome map
| Conread name: | Ova1-OVR010003H11 |
| Conread position: | 1-327 |
| Cow position: | chr14:16256634-16256977 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 236 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 51, 267 |
| Conread position: | 1-438 |
| Cow position: | chr14:109618-109178 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 306 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 73, 188 |
| Conread position: | 1-602 |
| Cow position: | chr14:18904728-18904117 (view UCSC Genome Browser custom track) |
| Alignm length: | 619 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 125 |
| Conread position: | 4-426 |
| Cow position: | chr14:20932485-20932926 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 323 |
| Conread position: | 20-243 |
| Cow position: | chr14:2038914-2038690 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 31, 64 |
| Conread position: | 31-399 |
| Cow position: | chr14:11043583-11043208 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 262 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 13, 36 |
| Conread position: | 42-224 |
| Cow position: | chr14:24945572-24945383 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 20, 39 |
| Conread position: | 43-244 |
| Cow position: | chr14:25903452-25903651 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 19, 37 |
| Conread position: | 45-451 |
| Cow position: | chr14:18657682-18657265 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 289 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 42, 8 |
| Conread position: | 49-305 |
| Cow position: | chr14:16550076-16549813 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 17, 40 |
| Conread position: | 49-420 |
| Cow position: | chr14:4990929-4991293 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 263 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 13, 31 |
| Conread position: | 49-459 |
| Cow position: | chr14:18345800-18345393 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 30 |
| Conread position: | 65-549 |
| Cow position: | chr14:26442396-26441908 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 14 |
| Conread position: | 65-567 |
| Cow position: | chr14:41210798-41211318 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 16 |
| Conread position: | 72-417 |
| Cow position: | chr14:37131601-37131957 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 247 |
| Conread position: | 77-551 |
| Cow position: | chr14:27592002-27591516 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 34 |
| Conread position: | 77-601 |
| Cow position: | chr14:20640675-20640136 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 63 |
| Conread position: | 78-394 |
| Cow position: | chr14:32452204-32452531 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 238 |
| Conread position: | 79-378 |
| Cow position: | chr14:28115231-28114924 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 221 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 28, 13 |
| Conread position: | 79-549 |
| Cow position: | chr14:34199887-34199412 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 114 |
| Conread position: | 79-602 |
| Cow position: | chr14:41749803-41749287 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 85 |
| Conread position: | 80-308 |
| Cow position: | chr14:15492550-15492790 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 169 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 80-349 |
| Cow position: | chr14:20826448-20826702 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 157, 10 |
| Conread position: | 80-362 |
| Cow position: | chr14:16760356-16760642 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 212 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 25, 95 |
| Conread position: | 80-374 |
| Cow position: | chr14:38338176-38337889 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 214 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 156, 18 |
| Conread position: | 80-377 |
| Cow position: | chr14:1646227-1645931 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 40 |
| Conread position: | 80-377 |
| Cow position: | chr14:2959481-2959778 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 216 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 41, 37 |
| Conread position: | 80-377 |
| Cow position: | chr14:24387398-24387709 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 47, 243 |
| Conread position: | 80-383 |
| Cow position: | chr14:13845942-13846250 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 226 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 122, 238 |
| Conread position: | 80-386 |
| Cow position: | chr14:19372296-19372610 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 243 |
| Conread position: | 80-430 |
| Cow position: | chr14:10078225-10078569 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 199 |
| Conread position: | 80-481 |
| Cow position: | chr14:39770270-39769860 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 42 |
| Conread position: | 80-483 |
| Cow position: | chr14:40432883-40433286 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 21 |
| Conread position: | 80-491 |
| Cow position: | chr14:48427031-48427449 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 47 |
| Conread position: | 80-548 |
| Cow position: | chr14:26433285-26432820 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 234 |
| Conread position: | 80-549 |
| Cow position: | chr14:19618794-19618328 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 39 |
| Conread position: | 80-549 |
| Cow position: | chr14:19863476-19863016 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 180 |
| Conread position: | 80-561 |
| Cow position: | chr14:22988991-22989477 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 74 |
| Conread position: | 80-602 |
| Cow position: | chr14:25403978-25403461 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 195 |
| Conread position: | 81-308 |
| Cow position: | chr14:10631161-10630931 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 59, 66 |
| Conread position: | 82-601 |
| Cow position: | chr14:39778711-39779231 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 167 |
| Conread position: | 83-428 |
| Cow position: | chr14:48412922-48412567 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 247 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 43, 37 |
| Conread position: | 83-460 |
| Cow position: | chr14:24236784-24237158 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 266 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 27, 231 |
| Conread position: | 84-377 |
| Cow position: | chr14:40165385-40165679 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 214 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 105, 197 |
| Conread position: | 84-394 |
| Cow position: | chr14:37884449-37884136 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 213 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 42, 35 |
| Conread position: | 84-428 |
| Cow position: | chr14:3564245-3564583 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 237 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 105, 188 |
| Conread position: | 85-381 |
| Cow position: | chr14:33309541-33309248 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 212 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 41, 34 |
| Conread position: | 87-589 |
| Cow position: | chr14:19189008-19189511 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 131 |
| Conread position: | 89-428 |
| Cow position: | chr14:33791157-33791499 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 42 |
| Conread position: | 90-305 |
| Cow position: | chr14:48838562-48838786 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 90-397 |
| Cow position: | chr14:50055365-50055679 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 154, 91 |
| Conread position: | 90-588 |
| Cow position: | chr14:8784161-8784647 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 94 |
| Conread position: | 90-602 |
| Cow position: | chr14:27791511-27792020 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 90 |
| Conread position: | 92-302 |
| Cow position: | chr14:3162696-3162898 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 48, 58 |
| Conread position: | 92-353 |
| Cow position: | chr14:25002004-25002270 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 182 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 34, 27 |
| Conread position: | 92-394 |
| Cow position: | chr14:17841323-17841012 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 34, 27 |
| Conread position: | 92-408 |
| Cow position: | chr14:43035870-43036168 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 228 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 302, 48 |
| Conread position: | 92-416 |
| Cow position: | chr14:35018784-35018458 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 222 |
| Conread position: | 92-427 |
| Cow position: | chr14:23682232-23682572 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 244 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 77, 183 |
| Conread position: | 92-602 |
| Cow position: | chr14:41479693-41479173 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 132 |
| Conread position: | 95-426 |
| Cow position: | chr14:33714706-33714380 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 85 |
| Conread position: | 96-581 |
| Cow position: | chr14:37883943-37883453 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 23 |
| Conread position: | 100-355 |
| Cow position: | chr14:14949236-14948974 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 91, 221 |
| Conread position: | 100-387 |
| Cow position: | chr14:49411105-49411389 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 31, 19 |
| Conread position: | 100-393 |
| Cow position: | chr14:39918770-39918489 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 211 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 126, 79 |
| Conread position: | 100-394 |
| Cow position: | chr14:3868451-3868155 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 214 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 97, 125 |
| Conread position: | 100-394 |
| Cow position: | chr14:37889838-37890125 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 201 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 203, 97 |
| Conread position: | 100-413 |
| Cow position: | chr14:26941244-26940928 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 212 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 45, 93 |
| Conread position: | 100-416 |
| Cow position: | chr14:49929767-49929437 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 91, 294 |
| Conread position: | 100-429 |
| Cow position: | chr14:27305121-27305467 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 43, 208 |
| Conread position: | 100-430 |
| Cow position: | chr14:5222314-5221975 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 235 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 94, 194 |
| Conread position: | 100-451 |
| Cow position: | chr14:9308207-9308559 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 52 |
| Conread position: | 100-580 |
| Cow position: | chr14:50362771-50363260 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 217 |
| Conread position: | 100-598 |
| Cow position: | chr14:25681904-25682427 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 19 |
| Conread position: | 100-602 |
| Cow position: | chr14:35420787-35420274 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 215 |
| Conread position: | 101-602 |
| Cow position: | chr14:13385346-13385859 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 214 |
| Conread position: | 101-602 |
| Cow position: | chr14:21201846-21201342 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 18 |
| Conread position: | 102-344 |
| Cow position: | chr14:15313540-15313782 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 90, 137 |
| Conread position: | 104-607 |
| Cow position: | chr14:18941305-18940819 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 86 |
| Conread position: | 131-593 |
| Cow position: | chr14:7270995-7270543 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 142 |
| Conread position: | 148-525 |
| Cow position: | chr14:5365906-5366279 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 140 |
| Conread position: | 150-596 |
| Cow position: | chr14:21762996-21762542 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 104 |
| Conread position: | 190-590 |
| Cow position: | chr14:8495224-8495619 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 116 |
| Conread position: | 279-590 |
| Cow position: | chr14:36424531-36424225 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 5 |
Show alignments to all cow chromosomes.