Cow genome map

Conread name: Ova1-OVR010003H11

Conread position: 1-243
Cow position: chr18:25006357-25006604 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 166
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 50, 85

Conread position: 1-246
Cow position: chr18:31711428-31711689 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 180
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 69, 0

Conread position: 1-274
Cow position: chr18:51594668-51594952 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 188
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 51, 231

Conread position: 1-281
Cow position: chr18:20462558-20462851 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 203
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 50, 102

Conread position: 1-285
Cow position: chr18:11578206-11577927 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 199
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 51, 83

Conread position: 1-318
Cow position: chr18:7417058-7416737 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 212
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 53, 233

Conread position: 1-393
Cow position: chr18:48713691-48713292 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 284
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 15, 20

Conread position: 1-435
Cow position: chr18:11685106-11684686 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 196, 17

Conread position: 1-501
Cow position: chr18:10576252-10575740 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 268

Conread position: 1-555
Cow position: chr18:9010854-9010307 (view UCSC Genome Browser custom track)
Alignm length: 574
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 183

Conread position: 1-602
Cow position: chr18:20126441-20125833 (view UCSC Genome Browser custom track)
Alignm length: 619
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 123

Conread position: 1-602
Cow position: chr18:44262772-44262140 (view UCSC Genome Browser custom track)
Alignm length: 639
Alignm identity: 458
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 133

Conread position: 1-613
Cow position: chr18:50082132-50082719 (view UCSC Genome Browser custom track)
Alignm length: 621
Alignm identity: 454
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 27

Conread position: 3-324
Cow position: chr18:52877495-52877181 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 218
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 48, 83

Conread position: 22-411
Cow position: chr18:20126995-20127384 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 265
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 159, 202

Conread position: 31-524
Cow position: chr18:29796327-29796828 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 33

Conread position: 37-457
Cow position: chr18:4884423-4884842 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 60

Conread position: 43-344
Cow position: chr18:1954501-1954808 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 221
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 19, 37

Conread position: 43-504
Cow position: chr18:2849179-2849636 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 39

Conread position: 49-602
Cow position: chr18:55788005-55787456 (view UCSC Genome Browser custom track)
Alignm length: 565
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 65

Conread position: 51-418
Cow position: chr18:28923767-28924121 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 29

Conread position: 51-532
Cow position: chr18:55505483-55505003 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 28

Conread position: 53-424
Cow position: chr18:46048829-46048470 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 262
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 184, 26

Conread position: 54-563
Cow position: chr18:12242350-12241837 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 25

Conread position: 65-224
Cow position: chr18:35367130-35367283 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 121
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 134, 15

Conread position: 65-394
Cow position: chr18:30794491-30794170 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 16

Conread position: 70-602
Cow position: chr18:9974268-9974800 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 167, 9

Conread position: 77-578
Cow position: chr18:30360094-30360574 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 107

Conread position: 78-316
Cow position: chr18:7077009-7076775 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 171
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 72, 62

Conread position: 78-557
Cow position: chr18:11618522-11618054 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 41

Conread position: 79-423
Cow position: chr18:42479533-42479875 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 180

Conread position: 79-492
Cow position: chr18:54973954-54974353 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 268, 82

Conread position: 79-523
Cow position: chr18:14586417-14586870 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 114

Conread position: 79-587
Cow position: chr18:28657858-28658368 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 112

Conread position: 79-588
Cow position: chr18:11322649-11322128 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 194

Conread position: 79-601
Cow position: chr18:22120832-22121353 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 12

Conread position: 80-275
Cow position: chr18:1571185-1571388 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 148
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 119, 62

Conread position: 80-363
Cow position: chr18:10977159-10977444 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 52

Conread position: 80-375
Cow position: chr18:42432037-42432333 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 220
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 55, 238

Conread position: 80-394
Cow position: chr18:21768666-21768363 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 229
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 158, 68

Conread position: 80-410
Cow position: chr18:11691357-11691691 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 35

Conread position: 80-428
Cow position: chr18:39875208-39875557 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 15

Conread position: 80-442
Cow position: chr18:44483721-44484071 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 160

Conread position: 80-454
Cow position: chr18:19273044-19273424 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 186

Conread position: 80-454
Cow position: chr18:55000690-55001061 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 26

Conread position: 80-458
Cow position: chr18:9365973-9365583 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 236

Conread position: 80-470
Cow position: chr18:44801837-44802224 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 234

Conread position: 80-503
Cow position: chr18:11790973-11790558 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 295
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 102, 47

Conread position: 80-518
Cow position: chr18:42431559-42432000 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 297
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 64, 60

Conread position: 80-525
Cow position: chr18:47512058-47511598 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 146

Conread position: 80-587
Cow position: chr18:38687132-38686642 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 314, 57

Conread position: 80-589
Cow position: chr18:31082296-31082797 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 314, 113

Conread position: 80-589
Cow position: chr18:33299956-33299447 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 217

Conread position: 80-590
Cow position: chr18:20641444-20641941 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 110

Conread position: 80-596
Cow position: chr18:45903845-45904366 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 44

Conread position: 80-602
Cow position: chr18:11779705-11779192 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 143

Conread position: 80-602
Cow position: chr18:22790036-22790542 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 83

Conread position: 80-615
Cow position: chr18:37023498-37024043 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 238

Conread position: 81-243
Cow position: chr18:49038513-49038344 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 124
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 109, 0

Conread position: 81-304
Cow position: chr18:21740764-21740990 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 164
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 105, 111

Conread position: 82-235
Cow position: chr18:43796905-43797061 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 122
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 108, 0

Conread position: 82-497
Cow position: chr18:10954516-10954114 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 37

Conread position: 82-603
Cow position: chr18:26939033-26938511 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 58

Conread position: 83-602
Cow position: chr18:4539833-4540347 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 65

Conread position: 85-522
Cow position: chr18:5487289-5486859 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 42

Conread position: 90-373
Cow position: chr18:3018044-3018322 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 200
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 106, 47

Conread position: 90-429
Cow position: chr18:25206146-25206492 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 77

Conread position: 91-390
Cow position: chr18:12023596-12023893 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 223
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 49, 56

Conread position: 92-308
Cow position: chr18:16686295-16686521 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 164
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 99, 167

Conread position: 92-363
Cow position: chr18:33896378-33896656 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 210
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 59, 220

Conread position: 92-372
Cow position: chr18:17390954-17391216 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 209
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 28, 0

Conread position: 92-426
Cow position: chr18:10904890-10904549 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 224

Conread position: 92-429
Cow position: chr18:33158982-33158654 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 235
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 294, 48

Conread position: 92-457
Cow position: chr18:29958124-29958474 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 158

Conread position: 92-602
Cow position: chr18:37002672-37002160 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 222

Conread position: 92-604
Cow position: chr18:29356584-29357113 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 226

Conread position: 95-421
Cow position: chr18:15613823-15614136 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 243
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 131, 212

Conread position: 95-562
Cow position: chr18:13507703-13508157 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 13

Conread position: 96-419
Cow position: chr18:23476651-23476960 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 223
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 29, 23

Conread position: 96-602
Cow position: chr18:12117814-12118319 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 29

Conread position: 100-411
Cow position: chr18:56183967-56183656 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 100

Conread position: 100-521
Cow position: chr18:55701632-55702036 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 85

Conread position: 100-522
Cow position: chr18:7359777-7359349 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 121

Conread position: 100-590
Cow position: chr18:13172500-13172989 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 78

Conread position: 100-602
Cow position: chr18:3180443-3179945 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 107

Conread position: 100-602
Cow position: chr18:51405874-51406366 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 19

Conread position: 101-587
Cow position: chr18:55552998-55552505 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 92

Conread position: 102-473
Cow position: chr18:48513311-48513677 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 90

Conread position: 102-548
Cow position: chr18:3027330-3027788 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 22

Conread position: 102-550
Cow position: chr18:7951145-7950692 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 122

Conread position: 102-583
Cow position: chr18:45571043-45570572 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 18

Conread position: 109-507
Cow position: chr18:33407640-33407244 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 209

Conread position: 114-607
Cow position: chr18:6103079-6103582 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 148

Conread position: 127-373
Cow position: chr18:33008068-33007813 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 197
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 61, 133

Conread position: 128-450
Cow position: chr18:44548908-44549225 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 234
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 62, 190

Conread position: 149-469
Cow position: chr18:8104959-8105283 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 167

Conread position: 195-602
Cow position: chr18:13293444-13293034 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 106

Conread position: 260-602
Cow position: chr18:7076633-7076295 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 51

Show alignments to all cow chromosomes.