Cow genome map
| Conread name: | Ova1-OVR010008E02 |
| Conread position: | 1-297 |
| Cow position: | chr1:33391768-33392051 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 0 |
| Conread position: | 1-328 |
| Cow position: | chr1:22726995-22727306 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 1-331 |
| Cow position: | chr1:67289110-67289429 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 230 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 147, 0 |
| Conread position: | 1-332 |
| Cow position: | chr1:61562734-61563056 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 244, 0 |
| Conread position: | 1-335 |
| Cow position: | chr1:26812375-26812050 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 0 |
| Conread position: | 1-335 |
| Cow position: | chr1:29902485-29902162 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 45 |
| Conread position: | 1-335 |
| Cow position: | chr1:31363400-31363080 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 256, 223 |
| Conread position: | 1-335 |
| Cow position: | chr1:56141656-56141331 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 0 |
| Conread position: | 1-335 |
| Cow position: | chr1:61343015-61342689 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 224 |
| Conread position: | 1-335 |
| Cow position: | chr1:99916134-99916462 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 307, 223 |
| Conread position: | 2-326 |
| Cow position: | chr1:81357943-81357630 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 2-337 |
| Cow position: | chr1:82369128-82369451 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 0 |
| Conread position: | 7-265 |
| Cow position: | chr1:68250639-68250894 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 197, 0 |
| Conread position: | 7-335 |
| Cow position: | chr1:46838504-46838817 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 17 |
| Conread position: | 7-335 |
| Cow position: | chr1:81328236-81328555 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 7-336 |
| Cow position: | chr1:81342228-81342550 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 228 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 210, 93 |
| Conread position: | 8-322 |
| Cow position: | chr1:19184852-19185157 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 211, 0 |
| Conread position: | 8-332 |
| Cow position: | chr1:9261209-9261531 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 213, 194 |
| Conread position: | 8-332 |
| Cow position: | chr1:21090154-21090469 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 227 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 53, 135 |
| Conread position: | 8-332 |
| Cow position: | chr1:30065065-30065399 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 232 |
| Conread position: | 8-332 |
| Cow position: | chr1:52336036-52335708 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 194 |
| Conread position: | 8-332 |
| Cow position: | chr1:53366623-53366944 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 235 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 47, 223 |
| Conread position: | 8-333 |
| Cow position: | chr1:82863521-82863838 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 218 |
| Conread position: | 8-335 |
| Cow position: | chr1:11199927-11199609 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 172 |
| Conread position: | 8-335 |
| Cow position: | chr1:14529750-14529436 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 230 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 197, 0 |
| Conread position: | 8-335 |
| Cow position: | chr1:18025106-18024775 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 236 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 98, 223 |
| Conread position: | 8-335 |
| Cow position: | chr1:18281689-18282004 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 199, 125 |
| Conread position: | 8-335 |
| Cow position: | chr1:21576254-21576570 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 0 |
| Conread position: | 8-335 |
| Cow position: | chr1:24441343-24441025 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 201, 0 |
| Conread position: | 8-335 |
| Cow position: | chr1:29365112-29365430 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 0 |
| Conread position: | 8-335 |
| Cow position: | chr1:31415515-31415201 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 35, 19 |
| Conread position: | 8-335 |
| Cow position: | chr1:33898972-33899289 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 8-335 |
| Cow position: | chr1:38478008-38478327 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 217 |
| Conread position: | 8-335 |
| Cow position: | chr1:50257216-50257530 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 158, 34 |
| Conread position: | 8-335 |
| Cow position: | chr1:54932631-54932950 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 217 |
| Conread position: | 8-335 |
| Cow position: | chr1:72086300-72086618 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 0 |
| Conread position: | 8-335 |
| Cow position: | chr1:79454262-79453944 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 0 |
| Conread position: | 8-335 |
| Cow position: | chr1:86506924-86506603 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 219 |
| Conread position: | 8-335 |
| Cow position: | chr1:89493508-89493190 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 0 |
| Conread position: | 8-335 |
| Cow position: | chr1:90912534-90912851 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 0 |
| Conread position: | 8-335 |
| Cow position: | chr1:91890689-91890369 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 218 |
| Conread position: | 8-336 |
| Cow position: | chr1:100509454-100509774 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 228 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 179, 211 |
| Conread position: | 9-327 |
| Cow position: | chr1:25088963-25088658 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 220 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 5, 52 |
| Conread position: | 9-332 |
| Cow position: | chr1:39481236-39480916 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 233 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 63, 219 |
| Conread position: | 9-334 |
| Cow position: | chr1:41518123-41517806 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 87 |
| Conread position: | 9-335 |
| Cow position: | chr1:31239520-31239206 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 228 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 49, 163 |
| Conread position: | 9-335 |
| Cow position: | chr1:99108528-99108205 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 199 |
| Conread position: | 9-336 |
| Cow position: | chr1:88178563-88178881 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 0 |
| Conread position: | 10-332 |
| Cow position: | chr1:27113442-27113134 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 0 |
| Conread position: | 14-335 |
| Cow position: | chr1:70863744-70864061 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 210 |
| Conread position: | 16-330 |
| Cow position: | chr1:88301049-88301365 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 179, 235 |
| Conread position: | 16-332 |
| Cow position: | chr1:63045435-63045130 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 71 |
| Conread position: | 16-335 |
| Cow position: | chr1:7196507-7196197 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 208, 0 |
| Conread position: | 17-332 |
| Cow position: | chr1:68456975-68457280 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 17-332 |
| Cow position: | chr1:70388602-70388293 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 163 |
| Conread position: | 18-335 |
| Cow position: | chr1:46613577-46613270 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 239, 72 |
| Conread position: | 24-335 |
| Cow position: | chr1:12058798-12058498 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 167, 0 |
| Conread position: | 24-335 |
| Cow position: | chr1:98617188-98617488 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 216 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 200, 0 |
| Conread position: | 28-336 |
| Cow position: | chr1:66504456-66504755 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 208 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 109, 15 |
| Conread position: | 29-328 |
| Cow position: | chr1:90291972-90291686 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 196 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 29-330 |
| Cow position: | chr1:11324239-11324531 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 184 |
| Conread position: | 29-331 |
| Cow position: | chr1:102322377-102322082 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 151 |
| Conread position: | 29-335 |
| Cow position: | chr1:54115983-54116270 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 137, 93 |
| Conread position: | 29-335 |
| Cow position: | chr1:73553983-73554282 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 205 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 114, 16 |
| Conread position: | 29-335 |
| Cow position: | chr1:100420324-100420627 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 219 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 146, 201 |
| Conread position: | 30-334 |
| Cow position: | chr1:89767872-89767575 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 192 |
| Conread position: | 31-334 |
| Cow position: | chr1:102776406-102776107 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 40, 194 |
| Conread position: | 31-335 |
| Cow position: | chr1:27310326-27310032 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 224 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 132, 37 |
| Conread position: | 31-335 |
| Cow position: | chr1:57659347-57659641 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 0 |
| Conread position: | 38-335 |
| Cow position: | chr1:14562480-14562184 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 113, 194 |
| Conread position: | 39-336 |
| Cow position: | chr1:96194435-96194144 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 188 |
| Conread position: | 50-331 |
| Cow position: | chr1:34684244-34684516 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 175, 0 |
| Conread position: | 56-330 |
| Cow position: | chr1:99689517-99689781 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 139, 0 |
| Conread position: | 57-335 |
| Cow position: | chr1:53371110-53371380 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 206 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 108, 29 |
| Conread position: | 68-335 |
| Cow position: | chr1:31596976-31597231 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 68-335 |
| Cow position: | chr1:67911519-67911776 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 187 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 72-310 |
| Cow position: | chr1:101788547-101788310 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 116, 64 |
| Conread position: | 86-331 |
| Cow position: | chr1:8827802-8828039 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 182 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 112, 138 |
| Conread position: | 91-332 |
| Cow position: | chr1:29704853-29704627 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 95-297 |
| Cow position: | chr1:101131193-101131000 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 142 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 108-331 |
| Cow position: | chr1:47162575-47162802 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 116, 41 |
| Conread position: | 109-335 |
| Cow position: | chr1:8528615-8528395 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 42, 111 |
| Conread position: | 123-335 |
| Cow position: | chr1:95766470-95766269 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 204, 39 |
| Conread position: | 150-335 |
| Cow position: | chr1:4336074-4336250 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 66, 0 |
Show alignments to all cow chromosomes.