Cow genome map
| Conread name: | Ova1-OVR010008E02 |
| Conread position: | 1-324 |
| Cow position: | chr3:24637986-24638300 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 172, 141 |
| Conread position: | 1-335 |
| Cow position: | chr3:5886072-5886399 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 220 |
| Conread position: | 1-335 |
| Cow position: | chr3:24443519-24443194 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 0 |
| Conread position: | 1-335 |
| Cow position: | chr3:43190695-43190370 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 217, 0 |
| Conread position: | 1-335 |
| Cow position: | chr3:72632645-72632972 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 254, 223 |
| Conread position: | 2-330 |
| Cow position: | chr3:24263256-24262933 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 233 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 79, 220 |
| Conread position: | 2-332 |
| Cow position: | chr3:59332035-59332358 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 0 |
| Conread position: | 2-333 |
| Cow position: | chr3:36517065-36516744 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 0 |
| Conread position: | 2-334 |
| Cow position: | chr3:63149062-63148737 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 2-336 |
| Cow position: | chr3:31770716-31771042 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 66 |
| Conread position: | 2-337 |
| Cow position: | chr3:64134930-64135266 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 169, 234 |
| Conread position: | 7-324 |
| Cow position: | chr3:6896427-6896732 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 8-326 |
| Cow position: | chr3:44926404-44926706 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 218 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 8-328 |
| Cow position: | chr3:19125861-19126166 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 219 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 8-331 |
| Cow position: | chr3:78024850-78024534 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 218 |
| Conread position: | 8-332 |
| Cow position: | chr3:50920618-50920932 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 8-335 |
| Cow position: | chr3:227283-226973 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 229 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 160, 76 |
| Conread position: | 8-335 |
| Cow position: | chr3:4162381-4162052 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 227 |
| Conread position: | 8-335 |
| Cow position: | chr3:10243243-10243561 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 208, 0 |
| Conread position: | 8-335 |
| Cow position: | chr3:23287753-23287435 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 211, 0 |
| Conread position: | 8-335 |
| Cow position: | chr3:25689235-25689555 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 218 |
| Conread position: | 8-335 |
| Cow position: | chr3:26595625-26595942 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 228 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 158, 19 |
| Conread position: | 8-335 |
| Cow position: | chr3:31418114-31418435 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 215 |
| Conread position: | 8-335 |
| Cow position: | chr3:40285734-40285416 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 0 |
| Conread position: | 8-335 |
| Cow position: | chr3:48602833-48603151 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 0 |
| Conread position: | 8-335 |
| Cow position: | chr3:53048197-53047881 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 8-335 |
| Cow position: | chr3:59864137-59864455 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 0 |
| Conread position: | 8-335 |
| Cow position: | chr3:68889989-68889672 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 0 |
| Conread position: | 8-336 |
| Cow position: | chr3:48525324-48525642 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 47 |
| Conread position: | 9-308 |
| Cow position: | chr3:52663336-52663626 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 187 |
| Conread position: | 9-335 |
| Cow position: | chr3:5497853-5497532 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 212, 0 |
| Conread position: | 9-335 |
| Cow position: | chr3:6441246-6441563 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 0 |
| Conread position: | 9-335 |
| Cow position: | chr3:46752210-46752520 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 9-335 |
| Cow position: | chr3:75039262-75038942 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 212 |
| Conread position: | 10-336 |
| Cow position: | chr3:40102254-40101947 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 20-307 |
| Cow position: | chr3:67545996-67545714 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 214 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 57, 17 |
| Conread position: | 21-335 |
| Cow position: | chr3:49463956-49463653 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 25-334 |
| Cow position: | chr3:11414420-11414715 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 215 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 133, 0 |
| Conread position: | 25-335 |
| Cow position: | chr3:23009971-23010272 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 199, 0 |
| Conread position: | 29-335 |
| Cow position: | chr3:29643964-29644258 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 219 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 146, 39 |
| Conread position: | 29-335 |
| Cow position: | chr3:55894432-55894724 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 218 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 31-330 |
| Cow position: | chr3:50460954-50461246 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 212 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 165, 0 |
| Conread position: | 32-333 |
| Cow position: | chr3:23170586-23170295 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 28 |
| Conread position: | 36-335 |
| Cow position: | chr3:39855841-39856130 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 26 |
| Conread position: | 46-332 |
| Cow position: | chr3:73637901-73638181 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 94, 21 |
| Conread position: | 54-332 |
| Cow position: | chr3:77549597-77549871 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 210 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 101, 148 |
| Conread position: | 58-328 |
| Cow position: | chr3:56100917-56101170 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 58-331 |
| Cow position: | chr3:14467245-14466983 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 24, 94 |
| Conread position: | 58-333 |
| Cow position: | chr3:24586600-24586331 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 202 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 117, 148 |
| Conread position: | 68-332 |
| Cow position: | chr3:29324784-29325039 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 187 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 121, 80 |
| Conread position: | 68-335 |
| Cow position: | chr3:75165437-75165185 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 71-323 |
| Cow position: | chr3:35972739-35972991 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 105, 159 |
| Conread position: | 78-335 |
| Cow position: | chr3:18461487-18461238 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 189 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 29, 147 |
| Conread position: | 86-335 |
| Cow position: | chr3:36402260-36402503 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 94, 141 |
| Conread position: | 107-330 |
| Cow position: | chr3:80817297-80817510 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 118, 0 |
| Conread position: | 108-328 |
| Cow position: | chr3:77706508-77706719 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 162 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 116-328 |
| Cow position: | chr3:64170922-64171122 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 117-323 |
| Cow position: | chr3:56147979-56148178 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 148 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 46, 109 |
Show alignments to all cow chromosomes.