Cow genome map
| Conread name: | Ova1-OVR010008E02 |
| Conread position: | 1-335 |
| Cow position: | chrX:10529328-10529003 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 0 |
| Conread position: | 1-335 |
| Cow position: | chrX:24444613-24444274 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 245 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 164, 237 |
| Conread position: | 1-335 |
| Cow position: | chrX:30137399-30137074 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 175, 0 |
| Conread position: | 1-335 |
| Cow position: | chrX:31201298-31201622 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 2-328 |
| Cow position: | chrX:24462977-24462664 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 230 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 124, 44 |
| Conread position: | 2-335 |
| Cow position: | chrX:16023536-16023856 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 228 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 2-335 |
| Cow position: | chrX:39564834-39564504 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 66 |
| Conread position: | 7-335 |
| Cow position: | chrX:13179392-13179065 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 27 |
| Conread position: | 7-335 |
| Cow position: | chrX:13415964-13415649 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 0 |
| Conread position: | 8-322 |
| Cow position: | chrX:29859977-29859656 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 203 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 127, 31 |
| Conread position: | 8-326 |
| Cow position: | chrX:26749802-26749496 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 217 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 8-328 |
| Cow position: | chrX:17664734-17664422 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 167, 217 |
| Conread position: | 8-330 |
| Cow position: | chrX:39387990-39387694 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 216 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 8-332 |
| Cow position: | chrX:2480165-2479850 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 0 |
| Conread position: | 8-332 |
| Cow position: | chrX:29098889-29099198 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 8-334 |
| Cow position: | chrX:11074684-11074373 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 193 |
| Conread position: | 8-334 |
| Cow position: | chrX:16036045-16035728 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 224 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 18, 217 |
| Conread position: | 8-335 |
| Cow position: | chrX:359983-360311 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 218 |
| Conread position: | 8-335 |
| Cow position: | chrX:11146873-11146554 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 217 |
| Conread position: | 8-335 |
| Cow position: | chrX:12144562-12144880 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 0 |
| Conread position: | 8-335 |
| Cow position: | chrX:13281930-13282249 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 143 |
| Conread position: | 8-335 |
| Cow position: | chrX:14782882-14782564 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 0 |
| Conread position: | 8-335 |
| Cow position: | chrX:21581906-21582223 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 8-335 |
| Cow position: | chrX:23021783-23022099 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 199, 20 |
| Conread position: | 8-335 |
| Cow position: | chrX:23279490-23279808 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 0 |
| Conread position: | 8-335 |
| Cow position: | chrX:23388084-23387754 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 238, 0 |
| Conread position: | 8-335 |
| Cow position: | chrX:23395070-23395388 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 0 |
| Conread position: | 8-335 |
| Cow position: | chrX:28606620-28606303 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 226 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 249, 73 |
| Conread position: | 8-335 |
| Cow position: | chrX:28753873-28753555 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 0 |
| Conread position: | 8-335 |
| Cow position: | chrX:29941644-29941959 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 173, 0 |
| Conread position: | 8-335 |
| Cow position: | chrX:30164765-30164449 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 8-336 |
| Cow position: | chrX:12464471-12464791 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 8-339 |
| Cow position: | chrX:22126310-22125998 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 232 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 321, 65 |
| Conread position: | 9-335 |
| Cow position: | chrX:7552341-7552020 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 219 |
| Conread position: | 9-335 |
| Cow position: | chrX:16781750-16782065 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 58 |
| Conread position: | 9-335 |
| Cow position: | chrX:18289619-18289302 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 216 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 134, 61 |
| Conread position: | 9-335 |
| Cow position: | chrX:30229647-30229330 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 0 |
| Conread position: | 10-332 |
| Cow position: | chrX:17610979-17610674 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 221 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 11-322 |
| Cow position: | chrX:28519246-28518943 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 223 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 47, 37 |
| Conread position: | 11-335 |
| Cow position: | chrX:21317915-21318233 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 227 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 142, 10 |
| Conread position: | 14-336 |
| Cow position: | chrX:21832361-21832668 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 0 |
| Conread position: | 15-335 |
| Cow position: | chrX:18243880-18243570 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 16 |
| Conread position: | 29-324 |
| Cow position: | chrX:27070329-27070605 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 29-335 |
| Cow position: | chrX:12312517-12312220 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 213 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 114, 17 |
| Conread position: | 30-326 |
| Cow position: | chrX:7810472-7810183 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 120, 199 |
| Conread position: | 50-335 |
| Cow position: | chrX:32145751-32145475 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 0 |
| Conread position: | 50-335 |
| Cow position: | chrX:41848028-41847752 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 0 |
| Conread position: | 57-335 |
| Cow position: | chrX:35027820-35028084 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 203 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 60-335 |
| Cow position: | chrX:34552907-34553177 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 201 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 34, 162 |
| Conread position: | 64-332 |
| Cow position: | chrX:322425-322694 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 196 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 68, 184 |
| Conread position: | 64-332 |
| Cow position: | chrX:41885668-41885399 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 68-335 |
| Cow position: | chrX:15142635-15142379 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 195 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 77-335 |
| Cow position: | chrX:2501121-2501369 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 141, 0 |
| Conread position: | 77-335 |
| Cow position: | chrX:37487479-37487728 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 13, 66 |
| Conread position: | 92-335 |
| Cow position: | chrX:26446647-26446882 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 184 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 204, 132 |
| Conread position: | 113-330 |
| Cow position: | chrX:11743840-11744048 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 118-335 |
| Cow position: | chrX:27497405-27497613 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 125-335 |
| Cow position: | chrX:20800369-20800570 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 99, 0 |
Show alignments to all cow chromosomes.