Cow genome map
| Conread name: | Ova1-OVR010028G07 |
| Conread position: | 191-539 |
| Cow position: | chr1:57656049-57655692 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 240 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 54, 99 |
| Conread position: | 199-536 |
| Cow position: | chr1:37455229-37454885 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 232 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 46, 5 |
| Conread position: | 200-535 |
| Cow position: | chr1:33850741-33850396 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 230 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 45, 90 |
| Conread position: | 201-423 |
| Cow position: | chr1:97123367-97123141 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 163 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 41, 94 |
| Conread position: | 201-428 |
| Cow position: | chr1:13645256-13645027 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 164 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 41, 86 |
| Conread position: | 201-429 |
| Cow position: | chr1:28722335-28722103 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 44, 88 |
| Conread position: | 201-429 |
| Cow position: | chr1:88634912-88634677 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 41, 94 |
| Conread position: | 201-429 |
| Cow position: | chr1:89900167-89900398 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 171 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 41, 94 |
| Conread position: | 201-429 |
| Cow position: | chr1:101858446-101858681 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 41, 94 |
| Conread position: | 201-432 |
| Cow position: | chr1:45097118-45096880 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 44, 93 |
| Conread position: | 201-432 |
| Cow position: | chr1:69536450-69536217 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 44, 91 |
| Conread position: | 201-432 |
| Cow position: | chr1:101149366-101149134 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 176 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 44, 71 |
| Conread position: | 201-487 |
| Cow position: | chr1:55324014-55324299 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 214 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 44, 86 |
| Conread position: | 201-515 |
| Cow position: | chr1:56162811-56162491 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 49, 89 |
| Conread position: | 201-534 |
| Cow position: | chr1:17037072-17037404 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 119, 31 |
| Conread position: | 201-534 |
| Cow position: | chr1:91898489-91898149 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 232 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 41, 86 |
| Conread position: | 201-535 |
| Cow position: | chr1:11292624-11292968 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 44, 89 |
| Conread position: | 201-535 |
| Cow position: | chr1:13449671-13449328 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 220 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 35, 79 |
| Conread position: | 201-535 |
| Cow position: | chr1:39543251-39542912 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 124, 79 |
| Conread position: | 201-536 |
| Cow position: | chr1:21086889-21086544 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 230 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 35, 86 |
| Conread position: | 201-536 |
| Cow position: | chr1:58223781-58223447 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 228 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 148, 31 |
| Conread position: | 201-536 |
| Cow position: | chr1:85791180-85790842 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 35, 89 |
| Conread position: | 201-548 |
| Cow position: | chr1:53198272-53197915 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 245 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 38, 16 |
| Conread position: | 201-548 |
| Cow position: | chr1:61308491-61308143 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 235 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 125, 77 |
| Conread position: | 201-548 |
| Cow position: | chr1:89771383-89771731 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 236 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 44, 89 |
| Conread position: | 201-548 |
| Cow position: | chr1:91719158-91719516 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 228 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 44, 90 |
| Conread position: | 201-561 |
| Cow position: | chr1:33894992-33894615 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 252 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 44, 15 |
| Conread position: | 201-561 |
| Cow position: | chr1:62925112-62924738 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 242 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 44, 89 |
| Conread position: | 201-561 |
| Cow position: | chr1:82652127-82651754 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 254 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 44, 89 |
| Conread position: | 202-429 |
| Cow position: | chr1:28801892-28802126 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 177 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 40, 87 |
| Conread position: | 202-488 |
| Cow position: | chr1:40513981-40514275 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 212 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 40, 88 |
| Conread position: | 202-489 |
| Cow position: | chr1:77122066-77122350 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 41, 85 |
| Conread position: | 202-502 |
| Cow position: | chr1:53364209-53363905 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 85 |
| Conread position: | 202-539 |
| Cow position: | chr1:67286018-67285670 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 88 |
| Conread position: | 202-544 |
| Cow position: | chr1:102548677-102548341 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 233 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 43, 89 |
| Conread position: | 202-561 |
| Cow position: | chr1:52172992-52173371 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 259 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 31, 96 |
| Conread position: | 203-536 |
| Cow position: | chr1:18244876-18245217 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 84 |
| Conread position: | 206-474 |
| Cow position: | chr1:100976454-100976727 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 39, 83 |
| Conread position: | 206-536 |
| Cow position: | chr1:97560194-97559853 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 219 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 39, 84 |
| Conread position: | 206-548 |
| Cow position: | chr1:30284117-30284470 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 225 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 39, 84 |
| Conread position: | 206-561 |
| Cow position: | chr1:20828386-20828024 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 234 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 36, 78 |
| Conread position: | 206-561 |
| Cow position: | chr1:31395906-31395538 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 243 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 44, 81 |
| Conread position: | 206-561 |
| Cow position: | chr1:82563990-82563623 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 241 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 39, 84 |
| Conread position: | 206-561 |
| Cow position: | chr1:88759041-88758676 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 242 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 39, 84 |
| Conread position: | 208-487 |
| Cow position: | chr1:89740732-89741018 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 212 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 29, 25 |
| Conread position: | 212-536 |
| Cow position: | chr1:79637440-79637773 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 238 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 24, 82 |
| Conread position: | 263-562 |
| Cow position: | chr1:38388246-38388538 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 214 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 86, 22 |
| Conread position: | 319-562 |
| Cow position: | chr1:89478434-89478181 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 182 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 30, 170 |
| Conread position: | 346-531 |
| Cow position: | chr1:52323118-52322938 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 100, 7 |
| Conread position: | 346-562 |
| Cow position: | chr1:72134251-72134033 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 192, 7 |
| Conread position: | 346-562 |
| Cow position: | chr1:87460204-87460408 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 191, 7 |
| Conread position: | 360-562 |
| Cow position: | chr1:42057924-42057720 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 178, 119 |
| Conread position: | 526-759 |
| Cow position: | chr1:79637691-79637926 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 99, 28 |
| Conread position: | 541-805 |
| Cow position: | chr1:38388442-38388705 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 192 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 85, 13 |
| Conread position: | 591-799 |
| Cow position: | chr1:93222668-93222870 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 191, 34 |
| Conread position: | 623-804 |
| Cow position: | chr1:72062802-72062982 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 132 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 46, 0 |
Show alignments to all cow chromosomes.