Cow genome map
| Conread name: | Ova1-OVR010028G07 |
| Conread position: | 51-479 |
| Cow position: | chr3:64028581-64029013 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 281 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 11, 28 |
| Conread position: | 164-535 |
| Cow position: | chr3:41212350-41212732 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 246 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 38, 33 |
| Conread position: | 201-429 |
| Cow position: | chr3:31354838-31355070 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 44, 94 |
| Conread position: | 201-429 |
| Cow position: | chr3:34396639-34396875 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 35, 88 |
| Conread position: | 201-429 |
| Cow position: | chr3:44255573-44255803 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 103, 89 |
| Conread position: | 201-432 |
| Cow position: | chr3:5047771-5048009 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 41, 94 |
| Conread position: | 201-432 |
| Cow position: | chr3:9716216-9715979 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 41, 28 |
| Conread position: | 201-432 |
| Cow position: | chr3:55230290-55230532 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 44, 97 |
| Conread position: | 201-432 |
| Cow position: | chr3:77474195-77473960 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 35, 88 |
| Conread position: | 201-483 |
| Cow position: | chr3:63005770-63006061 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 21, 87 |
| Conread position: | 201-515 |
| Cow position: | chr3:19938272-19937959 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 53, 26 |
| Conread position: | 201-517 |
| Cow position: | chr3:2916828-2916498 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 44, 194 |
| Conread position: | 201-535 |
| Cow position: | chr3:3522372-3522030 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 44, 10 |
| Conread position: | 201-535 |
| Cow position: | chr3:46678554-46678898 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 230 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 44, 89 |
| Conread position: | 201-536 |
| Cow position: | chr3:14440368-14440710 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 229 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 41, 86 |
| Conread position: | 201-536 |
| Cow position: | chr3:22335259-22334915 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 226 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 44, 89 |
| Conread position: | 201-536 |
| Cow position: | chr3:32623644-32623989 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 35, 89 |
| Conread position: | 201-536 |
| Cow position: | chr3:46861940-46862284 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 227 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 44, 86 |
| Conread position: | 201-539 |
| Cow position: | chr3:37968449-37968101 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 44, 89 |
| Conread position: | 201-539 |
| Cow position: | chr3:64649983-64649634 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 34, 89 |
| Conread position: | 201-561 |
| Cow position: | chr3:6781483-6781110 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 249 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 35, 89 |
| Conread position: | 202-474 |
| Cow position: | chr3:19801810-19801531 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 73 |
| Conread position: | 202-532 |
| Cow position: | chr3:17951055-17950715 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 16 |
| Conread position: | 202-536 |
| Cow position: | chr3:39326089-39325743 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 21 |
| Conread position: | 202-548 |
| Cow position: | chr3:49677141-49676782 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 90 |
| Conread position: | 206-548 |
| Cow position: | chr3:15989674-15990026 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 227 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 39, 11 |
| Conread position: | 206-548 |
| Cow position: | chr3:49614618-49614971 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 39, 84 |
| Conread position: | 206-561 |
| Cow position: | chr3:2369805-2370170 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 240 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 39, 84 |
| Conread position: | 206-561 |
| Cow position: | chr3:7159427-7159791 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 239 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 46, 80 |
| Conread position: | 206-561 |
| Cow position: | chr3:24313832-24313463 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 242 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 39, 81 |
| Conread position: | 207-533 |
| Cow position: | chr3:2909696-2910014 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 84 |
| Conread position: | 211-536 |
| Cow position: | chr3:52865375-52865705 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 79 |
| Conread position: | 211-561 |
| Cow position: | chr3:17829295-17829657 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 239 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 34, 9 |
| Conread position: | 236-536 |
| Cow position: | chr3:3907585-3907891 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 48 |
| Conread position: | 237-510 |
| Cow position: | chr3:48231576-48231859 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 213 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 48, 149 |
| Conread position: | 242-535 |
| Cow position: | chr3:47741466-47741764 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 199 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 84, 43 |
| Conread position: | 244-548 |
| Cow position: | chr3:58947037-58946740 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 42 |
| Conread position: | 245-432 |
| Cow position: | chr3:3805824-3805647 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 137 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 60, 45 |
| Conread position: | 284-536 |
| Cow position: | chr3:66892884-66893142 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 172 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 65, 155 |
| Conread position: | 302-548 |
| Cow position: | chr3:15054815-15055055 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 48, 183 |
| Conread position: | 319-548 |
| Cow position: | chr3:3979521-3979300 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 219, 14 |
| Conread position: | 328-536 |
| Cow position: | chr3:19877951-19877744 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 142 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 12, 52 |
| Conread position: | 353-536 |
| Cow position: | chr3:24592924-24593101 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 142 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 398-548 |
| Cow position: | chr3:60891321-60891172 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 140, 69 |
| Conread position: | 526-794 |
| Cow position: | chr3:60891268-60891005 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 16, 29 |
| Conread position: | 537-804 |
| Cow position: | chr3:52865636-52865904 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 89, 20 |
| Conread position: | 538-707 |
| Cow position: | chr3:64359192-64359363 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 125 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 87, 18 |
| Conread position: | 540-736 |
| Cow position: | chr3:17950779-17950577 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 85, 16 |
| Conread position: | 540-804 |
| Cow position: | chr3:3907822-3908090 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 192 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 55, 14 |
| Conread position: | 553-719 |
| Cow position: | chr3:24593045-24593211 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 72, 67 |
| Conread position: | 554-707 |
| Cow position: | chr3:27906330-27906487 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 115 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 554-805 |
| Cow position: | chr3:58946808-58946553 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 190 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 72, 124 |
| Conread position: | 576-802 |
| Cow position: | chr3:3053651-3053422 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 153 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 9, 189 |
| Conread position: | 646-805 |
| Cow position: | chr3:15055378-15055533 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 123 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 96, 0 |
Show alignments to all cow chromosomes.