Cow genome map
| Conread name: | Ova1-OVR010028G07 |
| Conread position: | 156-536 |
| Cow position: | chrX:24088683-24088284 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 261 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 62, 8 |
| Conread position: | 159-536 |
| Cow position: | chrX:21586327-21585940 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 26 |
| Conread position: | 185-536 |
| Cow position: | chrX:3085648-3086007 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 239 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 57, 105 |
| Conread position: | 191-432 |
| Cow position: | chrX:39717105-39716864 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 54, 98 |
| Conread position: | 199-517 |
| Cow position: | chrX:26767928-26768258 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 217 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 46, 5 |
| Conread position: | 201-429 |
| Cow position: | chrX:24274961-24274732 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 128, 82 |
| Conread position: | 201-432 |
| Cow position: | chrX:21633288-21633525 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 41, 94 |
| Conread position: | 201-432 |
| Cow position: | chrX:25332363-25332127 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 44, 88 |
| Conread position: | 201-453 |
| Cow position: | chrX:9901343-9901611 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 187 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 44, 89 |
| Conread position: | 201-512 |
| Cow position: | chrX:8478948-8478629 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 218 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 49, 89 |
| Conread position: | 201-517 |
| Cow position: | chrX:12341430-12341104 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 44, 89 |
| Conread position: | 201-517 |
| Cow position: | chrX:21339637-21339311 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 215 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 43, 89 |
| Conread position: | 201-535 |
| Cow position: | chrX:2603287-2602943 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 227 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 44, 88 |
| Conread position: | 201-535 |
| Cow position: | chrX:13032193-13032533 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 230 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 21, 82 |
| Conread position: | 201-535 |
| Cow position: | chrX:20316842-20317186 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 44, 89 |
| Conread position: | 201-536 |
| Cow position: | chrX:5324474-5324807 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 44, 82 |
| Conread position: | 201-536 |
| Cow position: | chrX:7092841-7092503 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 229 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 49, 83 |
| Conread position: | 201-536 |
| Cow position: | chrX:12655512-12655858 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 45, 89 |
| Conread position: | 201-536 |
| Cow position: | chrX:22526368-22526713 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 227 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 49, 89 |
| Conread position: | 201-536 |
| Cow position: | chrX:28635314-28635647 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 235 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 148, 26 |
| Conread position: | 201-536 |
| Cow position: | chrX:37848244-37847911 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 220 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 44, 86 |
| Conread position: | 201-541 |
| Cow position: | chrX:22620075-22620417 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 224 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 148, 84 |
| Conread position: | 201-548 |
| Cow position: | chrX:9173129-9173480 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 231 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 44, 89 |
| Conread position: | 201-548 |
| Cow position: | chrX:9193407-9193758 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 231 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 44, 89 |
| Conread position: | 201-551 |
| Cow position: | chrX:22583687-22584050 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 239 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 33, 88 |
| Conread position: | 201-556 |
| Cow position: | chrX:15180201-15180565 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 240 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 44, 79 |
| Conread position: | 201-561 |
| Cow position: | chrX:2860561-2860933 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 247 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 44, 89 |
| Conread position: | 201-561 |
| Cow position: | chrX:5862632-5862259 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 244 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 44, 85 |
| Conread position: | 201-561 |
| Cow position: | chrX:6576932-6576559 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 250 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 31, 89 |
| Conread position: | 201-561 |
| Cow position: | chrX:9124620-9124248 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 239 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 35, 7 |
| Conread position: | 201-561 |
| Cow position: | chrX:13077455-13077828 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 246 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 44, 86 |
| Conread position: | 201-561 |
| Cow position: | chrX:13098029-13098402 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 245 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 44, 86 |
| Conread position: | 201-561 |
| Cow position: | chrX:14051316-14050942 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 243 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 44, 89 |
| Conread position: | 201-561 |
| Cow position: | chrX:16565107-16564736 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 237 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 28, 87 |
| Conread position: | 201-561 |
| Cow position: | chrX:17479288-17479659 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 236 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 44, 90 |
| Conread position: | 201-561 |
| Cow position: | chrX:24325909-24326283 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 245 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 44, 89 |
| Conread position: | 201-561 |
| Cow position: | chrX:27972974-27973347 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 238 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 34, 78 |
| Conread position: | 201-561 |
| Cow position: | chrX:28759385-28759760 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 256 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 47, 88 |
| Conread position: | 201-561 |
| Cow position: | chrX:30668234-30668608 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 240 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 44, 89 |
| Conread position: | 202-432 |
| Cow position: | chrX:28604801-28605034 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 43, 87 |
| Conread position: | 202-432 |
| Cow position: | chrX:30990672-30990898 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 43, 114 |
| Conread position: | 202-517 |
| Cow position: | chrX:27493697-27493379 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 224 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 41, 70 |
| Conread position: | 202-528 |
| Cow position: | chrX:31372222-31371891 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 88 |
| Conread position: | 202-536 |
| Cow position: | chrX:30190146-30190484 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 43, 89 |
| Conread position: | 202-539 |
| Cow position: | chrX:16017868-16018203 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 43 |
| Conread position: | 202-547 |
| Cow position: | chrX:29794841-29795196 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 252 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 44, 88 |
| Conread position: | 202-548 |
| Cow position: | chrX:31034962-31034612 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 87 |
| Conread position: | 204-548 |
| Cow position: | chrX:25041167-25041520 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 77 |
| Conread position: | 206-515 |
| Cow position: | chrX:28651840-28652155 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 218 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 39, 84 |
| Conread position: | 206-536 |
| Cow position: | chrX:18218631-18218295 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 222 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 44, 84 |
| Conread position: | 206-548 |
| Cow position: | chrX:13398884-13399236 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 228 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 39, 84 |
| Conread position: | 206-548 |
| Cow position: | chrX:22610541-22610190 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 30, 82 |
| Conread position: | 206-561 |
| Cow position: | chrX:1833105-1832737 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 250 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 39, 78 |
| Conread position: | 206-561 |
| Cow position: | chrX:21305284-21305648 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 229 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 123, 72 |
| Conread position: | 206-561 |
| Cow position: | chrX:29934664-29934295 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 238 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 39, 84 |
| Conread position: | 207-548 |
| Cow position: | chrX:28553280-28552930 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 83 |
| Conread position: | 224-423 |
| Cow position: | chrX:35955401-35955602 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 16, 68 |
| Conread position: | 236-536 |
| Cow position: | chrX:2537189-2537486 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 49 |
| Conread position: | 238-405 |
| Cow position: | chrX:29283958-29283784 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 115, 47 |
| Conread position: | 245-537 |
| Cow position: | chrX:21791928-21791627 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 40 |
| Conread position: | 250-532 |
| Cow position: | chrX:35016088-35015803 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 211 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 70, 35 |
| Conread position: | 318-548 |
| Cow position: | chrX:6284051-6284285 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 171 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 35, 164 |
| Conread position: | 334-538 |
| Cow position: | chrX:6361637-6361844 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 16, 120 |
| Conread position: | 340-539 |
| Cow position: | chrX:17669842-17670036 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 142 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 537-803 |
| Cow position: | chrX:6361771-6362043 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 85, 17 |
| Conread position: | 537-804 |
| Cow position: | chrX:6284200-6284472 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 189 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 42, 17 |
| Conread position: | 537-804 |
| Cow position: | chrX:21791699-21791428 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 42, 28 |
| Conread position: | 537-805 |
| Cow position: | chrX:21586011-21585749 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 193 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 89, 17 |
| Conread position: | 539-803 |
| Cow position: | chrX:2537417-2537684 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 197 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 87, 20 |
| Conread position: | 540-805 |
| Cow position: | chrX:42450458-42450726 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 14 |
| Conread position: | 559-802 |
| Cow position: | chrX:31371934-31371695 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 20, 66 |
| Conread position: | 559-805 |
| Cow position: | chrX:28552993-28552747 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 170 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 66, 87 |
Show alignments to all cow chromosomes.