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Cow genome map

           
Conread name:
           
Ova1-OVRM10011B10
        

               
Conread position:
               
131-514
               

               
Cow position:
               
chr2:60691140-60690755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
15, 42
               

               
Conread position:
               
135-669
               

               
Cow position:
               
chr2:54700719-54700163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
558
               

               
Alignm identity:
               
386
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 351
               

               
Conread position:
               
139-632
               

               
Cow position:
               
chr2:29779280-29779779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
515
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
7, 84
               

               
Conread position:
               
140-792
               

               
Cow position:
               
chr2:70704492-70703852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
661
               

               
Alignm identity:
               
472
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 8
               

               
Conread position:
               
148-457
               

               
Cow position:
               
chr2:8821487-8821159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
93, 32
               

               
Conread position:
               
149-552
               

               
Cow position:
               
chr2:65587403-65586997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
27, 49
               

               
Conread position:
               
152-794
               

               
Cow position:
               
chr2:12949918-12950578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
670
               

               
Alignm identity:
               
470
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 415
               

               
Conread position:
               
153-578
               

               
Cow position:
               
chr2:63331571-63332003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
42, 147
               

               
Conread position:
               
155-452
               

               
Cow position:
               
chr2:13672754-13672456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
43, 30
               

               
Conread position:
               
157-731
               

               
Cow position:
               
chr2:30640422-30639842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
591
               

               
Alignm identity:
               
391
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 27
               

               
Conread position:
               
158-478
               

               
Cow position:
               
chr2:46057780-46058104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
11, 32
               

               
Conread position:
               
158-787
               

               
Cow position:
               
chr2:54654377-54655028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
659
               

               
Alignm identity:
               
477
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 112
               

               
Conread position:
               
159-312
               

               
Cow position:
               
chr2:72309766-72309914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
90, 12
               

               
Conread position:
               
159-654
               

               
Cow position:
               
chr2:33553938-33554431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 317
               

               
Conread position:
               
159-734
               

               
Cow position:
               
chr2:22371719-22372295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
589
               

               
Alignm identity:
               
438
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 264
               

               
Conread position:
               
159-794
               

               
Cow position:
               
chr2:33402254-33402899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
657
               

               
Alignm identity:
               
449
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 21
               

               
Conread position:
               
159-794
               

               
Cow position:
               
chr2:67595787-67596409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
657
               

               
Alignm identity:
               
456
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 12
               

               
Conread position:
               
160-438
               

               
Cow position:
               
chr2:13013314-13013035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
24, 37
               

               
Conread position:
               
160-540
               

               
Cow position:
               
chr2:41622716-41622327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
89, 9
               

               
Conread position:
               
160-545
               

               
Cow position:
               
chr2:2931292-2930892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
16, 33
               

               
Conread position:
               
160-650
               

               
Cow position:
               
chr2:41158188-41157696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
515
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
89, 5
               

               
Conread position:
               
160-763
               

               
Cow position:
               
chr2:31155924-31155324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
628
               

               
Alignm identity:
               
420
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 49
               

               
Conread position:
               
162-623
               

               
Cow position:
               
chr2:38205547-38206001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
23, 70
               

               
Conread position:
               
162-639
               

               
Cow position:
               
chr2:32408251-32408731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
73, 18
               

               
Conread position:
               
162-724
               

               
Cow position:
               
chr2:45784987-45784395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
602
               

               
Alignm identity:
               
434
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 65
               

               
Conread position:
               
162-734
               

               
Cow position:
               
chr2:43995158-43994583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
589
               

               
Alignm identity:
               
447
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 28
               

               
Conread position:
               
162-787
               

               
Cow position:
               
chr2:56828325-56828972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
655
               

               
Alignm identity:
               
467
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 137
               

               
Conread position:
               
162-792
               

               
Cow position:
               
chr2:15058836-15059468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
648
               

               
Alignm identity:
               
453
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 7
               

               
Conread position:
               
163-295
               

               
Cow position:
               
chr2:76348676-76348544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
85, 35
               

               
Conread position:
               
163-650
               

               
Cow position:
               
chr2:16422799-16422287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 296
               

               
Conread position:
               
164-553
               

               
Cow position:
               
chr2:46351555-46351934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 28
               

               
Conread position:
               
165-618
               

               
Cow position:
               
chr2:44229476-44229921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
35, 44
               

               
Conread position:
               
165-782
               

               
Cow position:
               
chr2:6039244-6038609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
640
               

               
Alignm identity:
               
453
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 28
               

               
Conread position:
               
166-528
               

               
Cow position:
               
chr2:58153926-58153561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 5
               

               
Conread position:
               
166-545
               

               
Cow position:
               
chr2:26170975-26170582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
12, 30
               

               
Conread position:
               
167-466
               

               
Cow position:
               
chr2:58479464-58479758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
82, 58
               

               
Conread position:
               
167-578
               

               
Cow position:
               
chr2:26851379-26850972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
93, 28
               

               
Conread position:
               
168-400
               

               
Cow position:
               
chr2:47879461-47879224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
168-487
               

               
Cow position:
               
chr2:46971334-46971016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
19, 91
               

               
Conread position:
               
168-521
               

               
Cow position:
               
chr2:72003723-72004083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
80, 99
               

               
Conread position:
               
168-628
               

               
Cow position:
               
chr2:46262664-46262203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 52
               

               
Conread position:
               
169-479
               

               
Cow position:
               
chr2:65036066-65036378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
20, 77
               

               
Conread position:
               
169-564
               

               
Cow position:
               
chr2:12686567-12686963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
44, 21
               

               
Conread position:
               
169-622
               

               
Cow position:
               
chr2:51799113-51799556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 137
               

               
Conread position:
               
169-639
               

               
Cow position:
               
chr2:62743787-62744263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 23
               

               
Conread position:
               
170-739
               

               
Cow position:
               
chr2:45478383-45478949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
592
               

               
Alignm identity:
               
419
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 10
               

               
Conread position:
               
171-456
               

               
Cow position:
               
chr2:45597203-45596908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
18, 178
               

               
Conread position:
               
171-465
               

               
Cow position:
               
chr2:57733647-57733348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
78, 21
               

               
Conread position:
               
171-489
               

               
Cow position:
               
chr2:40257195-40257520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 22
               

               
Conread position:
               
171-506
               

               
Cow position:
               
chr2:29735049-29734701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
77, 46
               

               
Conread position:
               
171-522
               

               
Cow position:
               
chr2:80770325-80769980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
48, 57
               

               
Conread position:
               
171-545
               

               
Cow position:
               
chr2:46119545-46119922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
37, 108
               

               
Conread position:
               
171-553
               

               
Cow position:
               
chr2:43960404-43960007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
22, 283
               

               
Conread position:
               
171-589
               

               
Cow position:
               
chr2:73359894-73360312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
78, 9
               

               
Conread position:
               
171-628
               

               
Cow position:
               
chr2:46245244-46245679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 23
               

               
Conread position:
               
171-628
               

               
Cow position:
               
chr2:47403434-47402964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
80, 257
               

               
Conread position:
               
171-635
               

               
Cow position:
               
chr2:45484742-45485219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
78, 20
               

               
Conread position:
               
171-645
               

               
Cow position:
               
chr2:46033557-46033076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 59
               

               
Conread position:
               
171-649
               

               
Cow position:
               
chr2:13354903-13354409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 25
               

               
Conread position:
               
171-718
               

               
Cow position:
               
chr2:80241960-80242524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
570
               

               
Alignm identity:
               
385
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 291
               

               
Conread position:
               
171-776
               

               
Cow position:
               
chr2:36137230-36136616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
625
               

               
Alignm identity:
               
418
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 14
               

               
Conread position:
               
171-794
               

               
Cow position:
               
chr2:14709906-14710533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
655
               

               
Alignm identity:
               
453
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 21
               

               
Conread position:
               
172-447
               

               
Cow position:
               
chr2:55817944-55817673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
16, 24
               

               
Conread position:
               
172-592
               

               
Cow position:
               
chr2:46120425-46120841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 20
               

               
Conread position:
               
172-734
               

               
Cow position:
               
chr2:42183587-42183002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
595
               

               
Alignm identity:
               
401
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 100
               

               
Conread position:
               
173-611
               

               
Cow position:
               
chr2:15597266-15597694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 22
               

               
Conread position:
               
173-793
               

               
Cow position:
               
chr2:31784145-31783534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
637
               

               
Alignm identity:
               
454
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 17
               

               
Conread position:
               
174-408
               

               
Cow position:
               
chr2:43990991-43990747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
174-591
               

               
Cow position:
               
chr2:40484284-40484724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 107
               

               
Conread position:
               
174-711
               

               
Cow position:
               
chr2:972033-971517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
551
               

               
Alignm identity:
               
388
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 15
               

               
Conread position:
               
174-727
               

               
Cow position:
               
chr2:41314089-41313556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
557
               

               
Alignm identity:
               
378
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
237, 62
               

               
Conread position:
               
174-793
               

               
Cow position:
               
chr2:35181612-35180987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
641
               

               
Alignm identity:
               
437
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 14
               

               
Conread position:
               
174-794
               

               
Cow position:
               
chr2:31673483-31672868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
638
               

               
Alignm identity:
               
434
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 21
               

               
Conread position:
               
175-369
               

               
Cow position:
               
chr2:21171822-21171618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
175-525
               

               
Cow position:
               
chr2:33471779-33472126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
72, 20
               

               
Conread position:
               
175-617
               

               
Cow position:
               
chr2:41145537-41145083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 336
               

               
Conread position:
               
175-761
               

               
Cow position:
               
chr2:69250450-69251056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
617
               

               
Alignm identity:
               
420
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 17
               

               
Conread position:
               
175-765
               

               
Cow position:
               
chr2:80116316-80115740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
604
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 214
               

               
Conread position:
               
175-789
               

               
Cow position:
               
chr2:4071122-4070518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
628
               

               
Alignm identity:
               
418
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 39
               

               
Conread position:
               
176-656
               

               
Cow position:
               
chr2:42608283-42607798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 228
               

               
Conread position:
               
177-650
               

               
Cow position:
               
chr2:73094586-73095051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 96
               

               
Conread position:
               
177-774
               

               
Cow position:
               
chr2:45498987-45499582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
613
               

               
Alignm identity:
               
458
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 18
               

               
Conread position:
               
177-792
               

               
Cow position:
               
chr2:276883-276290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
626
               

               
Alignm identity:
               
421
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 63
               

               
Conread position:
               
177-794
               

               
Cow position:
               
chr2:1422567-1421975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
637
               

               
Alignm identity:
               
447
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 22
               

               
Conread position:
               
177-794
               

               
Cow position:
               
chr2:40728576-40727957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
645
               

               
Alignm identity:
               
439
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 256
               

               
Conread position:
               
178-622
               

               
Cow position:
               
chr2:41087892-41088364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 22
               

               
Conread position:
               
178-643
               

               
Cow position:
               
chr2:39584646-39584191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 17
               

               
Conread position:
               
178-794
               

               
Cow position:
               
chr2:27337561-27338198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
651
               

               
Alignm identity:
               
448
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 187
               

               
Conread position:
               
180-612
               

               
Cow position:
               
chr2:33531731-33532173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
70, 363
               

               
Conread position:
               
180-639
               

               
Cow position:
               
chr2:1073734-1073275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 15
               

               
Conread position:
               
180-770
               

               
Cow position:
               
chr2:17940074-17940672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
609
               

               
Alignm identity:
               
446
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 31
               

               
Conread position:
               
180-794
               

               
Cow position:
               
chr2:24271427-24270813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
630
               

               
Alignm identity:
               
456
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 15
               

               
Conread position:
               
181-514
               

               
Cow position:
               
chr2:76861237-76861592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
181-790
               

               
Cow position:
               
chr2:1304164-1303543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
633
               

               
Alignm identity:
               
446
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 49
               

               
Conread position:
               
181-794
               

               
Cow position:
               
chr2:70896261-70895610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
658
               

               
Alignm identity:
               
470
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 264
               

               
Conread position:
               
182-496
               

               
Cow position:
               
chr2:387566-387886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
56, 10
               

               
Conread position:
               
182-521
               

               
Cow position:
               
chr2:24859216-24858865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
67, 119
               

               
Conread position:
               
182-687
               

               
Cow position:
               
chr2:9063479-9062966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
518
               

               
Alignm identity:
               
387
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 169
               

               
Conread position:
               
183-407
               

               
Cow position:
               
chr2:53491248-53491475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
11, 45
               

               
Conread position:
               
183-466
               

               
Cow position:
               
chr2:43444820-43444518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
62, 265
               

               
Conread position:
               
183-570
               

               
Cow position:
               
chr2:46342936-46343325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 190
               

               
Conread position:
               
183-576
               

               
Cow position:
               
chr2:34749782-34750172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 9
               

               
Conread position:
               
183-601
               

               
Cow position:
               
chr2:19294799-19294388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 15
               

               
Conread position:
               
183-618
               

               
Cow position:
               
chr2:5300808-5300356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 12
               

               
Conread position:
               
183-631
               

               
Cow position:
               
chr2:51594980-51594521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 9
               

               
Conread position:
               
183-642
               

               
Cow position:
               
chr2:43835350-43835822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 9
               

               
Conread position:
               
183-737
               

               
Cow position:
               
chr2:23713084-23712537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
574
               

               
Alignm identity:
               
392
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 12
               

               
Conread position:
               
183-763
               

               
Cow position:
               
chr2:46378901-46379464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
590
               

               
Alignm identity:
               
410
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 12
               

               
Conread position:
               
183-792
               

               
Cow position:
               
chr2:36077569-36076941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
637
               

               
Alignm identity:
               
429
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 9
               

               
Conread position:
               
183-793
               

               
Cow position:
               
chr2:43624328-43624936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
627
               

               
Alignm identity:
               
468
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 90
               

               
Conread position:
               
183-794
               

               
Cow position:
               
chr2:19211851-19212454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
623
               

               
Alignm identity:
               
451
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 12
               

               
Conread position:
               
184-330
               

               
Cow position:
               
chr2:39798483-39798334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
45, 76
               

               
Conread position:
               
184-448
               

               
Cow position:
               
chr2:28301412-28301140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
15, 145
               

               
Conread position:
               
184-501
               

               
Cow position:
               
chr2:47753387-47753737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
65, 11
               

               
Conread position:
               
184-611
               

               
Cow position:
               
chr2:1651588-1651179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
419, 47
               

               
Conread position:
               
184-628
               

               
Cow position:
               
chr2:49467839-49467378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 42
               

               
Conread position:
               
184-708
               

               
Cow position:
               
chr2:192273-192781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
530
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 53
               

               
Conread position:
               
184-792
               

               
Cow position:
               
chr2:37009614-37009007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
623
               

               
Alignm identity:
               
456
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 8
               

               
Conread position:
               
184-794
               

               
Cow position:
               
chr2:13369868-13369242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
641
               

               
Alignm identity:
               
442
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 244
               

               
Conread position:
               
184-794
               

               
Cow position:
               
chr2:44931048-44931664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
638
               

               
Alignm identity:
               
431
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 186
               

               
Conread position:
               
185-338
               

               
Cow position:
               
chr2:73981839-73981677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
185-420
               

               
Cow position:
               
chr2:40373200-40373436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
46, 7
               

               
Conread position:
               
185-451
               

               
Cow position:
               
chr2:38640527-38640247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
185-454
               

               
Cow position:
               
chr2:39067705-39067434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
15, 201
               

               
Conread position:
               
185-496
               

               
Cow position:
               
chr2:19137682-19138005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 93
               

               
Conread position:
               
185-508
               

               
Cow position:
               
chr2:44007639-44007295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
15, 32
               

               
Conread position:
               
185-525
               

               
Cow position:
               
chr2:11657098-11656755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 194
               

               
Conread position:
               
185-528
               

               
Cow position:
               
chr2:17841783-17842119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
46, 14
               

               
Conread position:
               
185-543
               

               
Cow position:
               
chr2:58687143-58686778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 245
               

               
Conread position:
               
185-562
               

               
Cow position:
               
chr2:13877642-13877276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
57, 83
               

               
Conread position:
               
185-618
               

               
Cow position:
               
chr2:39787209-39786794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
331, 10
               

               
Conread position:
               
185-622
               

               
Cow position:
               
chr2:13604661-13604230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 78
               

               
Conread position:
               
185-622
               

               
Cow position:
               
chr2:38362172-38362607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 10
               

               
Conread position:
               
185-622
               

               
Cow position:
               
chr2:84480291-84480755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 235
               

               
Conread position:
               
185-622
               

               
Cow position:
               
chr2:85280942-85281347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
185-635
               

               
Cow position:
               
chr2:41057336-41057754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
64, 17
               

               
Conread position:
               
185-638
               

               
Cow position:
               
chr2:21003378-21002932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 37
               

               
Conread position:
               
185-649
               

               
Cow position:
               
chr2:29801937-29802374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
63, 7
               

               
Conread position:
               
185-649
               

               
Cow position:
               
chr2:41248777-41248302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 370
               

               
Conread position:
               
185-690
               

               
Cow position:
               
chr2:64292520-64293006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
115, 57
               

               
Conread position:
               
185-735
               

               
Cow position:
               
chr2:46227673-46227116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
574
               

               
Alignm identity:
               
436
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 10
               

               
Conread position:
               
185-781
               

               
Cow position:
               
chr2:7720723-7721295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
607
               

               
Alignm identity:
               
394
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
59, 76
               

               
Conread position:
               
185-792
               

               
Cow position:
               
chr2:53650225-53649629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
621
               

               
Alignm identity:
               
468
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 41
               

               
Conread position:
               
185-792
               

               
Cow position:
               
chr2:76313658-76314259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
624
               

               
Alignm identity:
               
432
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 14
               

               
Conread position:
               
185-794
               

               
Cow position:
               
chr2:4016650-4017266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
638
               

               
Alignm identity:
               
431
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 42
               

               
Conread position:
               
185-794
               

               
Cow position:
               
chr2:28820581-28819954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
635
               

               
Alignm identity:
               
429
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 148
               

               
Conread position:
               
185-794
               

               
Cow position:
               
chr2:57776559-57775938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
637
               

               
Alignm identity:
               
461
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 7
               

               
Conread position:
               
186-351
               

               
Cow position:
               
chr2:1888469-1888636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
63, 9
               

               
Conread position:
               
186-494
               

               
Cow position:
               
chr2:36935916-36936209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
126, 46
               

               
Conread position:
               
186-521
               

               
Cow position:
               
chr2:24594070-24593734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
14, 139
               

               
Conread position:
               
186-641
               

               
Cow position:
               
chr2:32048686-32048230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 6
               

               
Conread position:
               
186-774
               

               
Cow position:
               
chr2:56821182-56821790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
612
               

               
Alignm identity:
               
406
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 122
               

               
Conread position:
               
186-791
               

               
Cow position:
               
chr2:26438521-26439133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
625
               

               
Alignm identity:
               
448
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 56
               

               
Conread position:
               
186-794
               

               
Cow position:
               
chr2:71437168-71437789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
629
               

               
Alignm identity:
               
458
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 94
               

               
Conread position:
               
186-794
               

               
Cow position:
               
chr2:76562330-76561700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
642
               

               
Alignm identity:
               
457
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 254
               

               
Conread position:
               
187-533
               

               
Cow position:
               
chr2:54968214-54967857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
62, 5
               

               
Conread position:
               
187-550
               

               
Cow position:
               
chr2:37374048-37373702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
116, 23
               

               
Conread position:
               
187-621
               

               
Cow position:
               
chr2:72758814-72758399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
62, 74
               

               
Conread position:
               
187-628
               

               
Cow position:
               
chr2:21382642-21383098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 180
               

               
Conread position:
               
187-726
               

               
Cow position:
               
chr2:79754-80321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
572
               

               
Alignm identity:
               
419
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 345
               

               
Conread position:
               
187-763
               

               
Cow position:
               
chr2:52171439-52170891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
585
               

               
Alignm identity:
               
394
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 56
               

               
Conread position:
               
187-778
               

               
Cow position:
               
chr2:32431531-32432123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
619
               

               
Alignm identity:
               
411
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 197
               

               
Conread position:
               
187-792
               

               
Cow position:
               
chr2:33262424-33263025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
620
               

               
Alignm identity:
               
450
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 12
               

               
Conread position:
               
187-794
               

               
Cow position:
               
chr2:29042103-29041472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
644
               

               
Alignm identity:
               
429
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 17
               

               
Conread position:
               
188-578
               

               
Cow position:
               
chr2:70495453-70495081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
13, 65
               

               
Conread position:
               
188-601
               

               
Cow position:
               
chr2:56937881-56937471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
61, 7
               

               
Conread position:
               
189-469
               

               
Cow position:
               
chr2:20250893-20250623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
60, 71
               

               
Conread position:
               
189-549
               

               
Cow position:
               
chr2:38785397-38785768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 92
               

               
Conread position:
               
189-628
               

               
Cow position:
               
chr2:46204725-46204267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
21, 241
               

               
Conread position:
               
190-479
               

               
Cow position:
               
chr2:74964652-74964388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
190-625
               

               
Cow position:
               
chr2:11599625-11599202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 171
               

               
Conread position:
               
190-794
               

               
Cow position:
               
chr2:32264190-32264814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
633
               

               
Alignm identity:
               
443
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 133
               

               
Conread position:
               
192-484
               

               
Cow position:
               
chr2:21049133-21049415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
56, 155
               

               
Conread position:
               
192-501
               

               
Cow position:
               
chr2:48634850-48635161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
48, 92
               

               
Conread position:
               
192-521
               

               
Cow position:
               
chr2:19155984-19156322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
56, 232
               

               
Conread position:
               
192-528
               

               
Cow position:
               
chr2:32660383-32660030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
35, 137
               

               
Conread position:
               
192-601
               

               
Cow position:
               
chr2:84983442-84983021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
23, 40
               

               
Conread position:
               
192-638
               

               
Cow position:
               
chr2:6281821-6282265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
8, 61
               

               
Conread position:
               
192-645
               

               
Cow position:
               
chr2:16071201-16071658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
56, 231
               

               
Conread position:
               
192-645
               

               
Cow position:
               
chr2:82957883-82957413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
57, 243
               

               
Conread position:
               
192-656
               

               
Cow position:
               
chr2:38662494-38662949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 160
               

               
Conread position:
               
192-688
               

               
Cow position:
               
chr2:55526572-55527059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 94
               

               
Conread position:
               
192-734
               

               
Cow position:
               
chr2:44482468-44482996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
553
               

               
Alignm identity:
               
394
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 35
               

               
Conread position:
               
192-794
               

               
Cow position:
               
chr2:55632973-55632364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
619
               

               
Alignm identity:
               
459
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 47
               

               
Conread position:
               
192-794
               

               
Cow position:
               
chr2:72902105-72902685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
617
               

               
Alignm identity:
               
398
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
57, 31
               

               
Conread position:
               
193-725
               

               
Cow position:
               
chr2:14634384-14633846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
563
               

               
Alignm identity:
               
398
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 101
               

               
Conread position:
               
193-770
               

               
Cow position:
               
chr2:18857955-18858520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
589
               

               
Alignm identity:
               
410
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 83
               

               
Conread position:
               
193-770
               

               
Cow position:
               
chr2:39855965-39855403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
591
               

               
Alignm identity:
               
399
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 76
               

               
Conread position:
               
194-407
               

               
Cow position:
               
chr2:39271245-39271455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
54, 73
               

               
Conread position:
               
194-521
               

               
Cow position:
               
chr2:39334674-39335002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
56, 82
               

               
Conread position:
               
195-406
               

               
Cow position:
               
chr2:43591175-43591396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
53, 140
               

               
Conread position:
               
195-407
               

               
Cow position:
               
chr2:40703472-40703690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
82, 44
               

               
Conread position:
               
195-439
               

               
Cow position:
               
chr2:53500847-53501091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
54, 122
               

               
Conread position:
               
195-440
               

               
Cow position:
               
chr2:15872128-15871881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
54, 27
               

               
Conread position:
               
195-441
               

               
Cow position:
               
chr2:21410429-21410159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
195-441
               

               
Cow position:
               
chr2:82116285-82116032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
54, 129
               

               
Conread position:
               
195-443
               

               
Cow position:
               
chr2:46162151-46161895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
195-452
               

               
Cow position:
               
chr2:19062348-19062105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
230, 54
               

               
Conread position:
               
195-458
               

               
Cow position:
               
chr2:41382189-41381928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
54, 83
               

               
Conread position:
               
195-470
               

               
Cow position:
               
chr2:994173-994451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
91, 30
               

               
Conread position:
               
195-473
               

               
Cow position:
               
chr2:46967999-46968280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
54, 31
               

               
Conread position:
               
195-475
               

               
Cow position:
               
chr2:80177399-80177674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
53, 78
               

               
Conread position:
               
195-479
               

               
Cow position:
               
chr2:24530562-24530278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
53, 212
               

               
Conread position:
               
195-493
               

               
Cow position:
               
chr2:60091237-60091537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
54, 226
               

               
Conread position:
               
195-525
               

               
Cow position:
               
chr2:46136973-46137298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 72
               

               
Conread position:
               
195-537
               

               
Cow position:
               
chr2:7573319-7573653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 22
               

               
Conread position:
               
195-541
               

               
Cow position:
               
chr2:46129967-46130306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 30
               

               
Conread position:
               
195-549
               

               
Cow position:
               
chr2:54883666-54883303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
40, 149
               

               
Conread position:
               
195-550
               

               
Cow position:
               
chr2:31460146-31460496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
53, 31
               

               
Conread position:
               
195-564
               

               
Cow position:
               
chr2:45565900-45565523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
52, 232
               

               
Conread position:
               
195-571
               

               
Cow position:
               
chr2:46942155-46942549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
28, 246
               

               
Conread position:
               
195-580
               

               
Cow position:
               
chr2:827421-827803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 30
               

               
Conread position:
               
195-587
               

               
Cow position:
               
chr2:29122083-29121687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 145
               

               
Conread position:
               
195-589
               

               
Cow position:
               
chr2:40489001-40488610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 31
               

               
Conread position:
               
195-611
               

               
Cow position:
               
chr2:60462631-60463040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
54, 82
               

               
Conread position:
               
195-611
               

               
Cow position:
               
chr2:60468010-60468419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
54, 82
               

               
Conread position:
               
195-612
               

               
Cow position:
               
chr2:6160151-6160552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 203
               

               
Conread position:
               
195-620
               

               
Cow position:
               
chr2:75227403-75226966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 288
               

               
Conread position:
               
195-620
               

               
Cow position:
               
chr2:81348697-81349118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
185, 77
               

               
Conread position:
               
195-622
               

               
Cow position:
               
chr2:15250366-15249948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 75
               

               
Conread position:
               
195-628
               

               
Cow position:
               
chr2:992351-991931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 301
               

               
Conread position:
               
195-628
               

               
Cow position:
               
chr2:6356166-6356628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 259
               

               
Conread position:
               
195-628
               

               
Cow position:
               
chr2:13684889-13684465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 115
               

               
Conread position:
               
195-628
               

               
Cow position:
               
chr2:17966843-17967275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
224, 120
               

               
Conread position:
               
195-628
               

               
Cow position:
               
chr2:20933991-20933551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
78, 26
               

               
Conread position:
               
195-628
               

               
Cow position:
               
chr2:20947567-20947132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 129
               

               
Conread position:
               
195-628
               

               
Cow position:
               
chr2:24393493-24393930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 182
               

               
Conread position:
               
195-628
               

               
Cow position:
               
chr2:41008095-41008505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
54, 157
               

               
Conread position:
               
195-628
               

               
Cow position:
               
chr2:46331265-46330815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 55
               

               
Conread position:
               
195-628
               

               
Cow position:
               
chr2:46746133-46745681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 295
               

               
Conread position:
               
195-637
               

               
Cow position:
               
chr2:47990618-47990186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 65
               

               
Conread position:
               
195-638
               

               
Cow position:
               
chr2:75600909-75600457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 83
               

               
Conread position:
               
195-639
               

               
Cow position:
               
chr2:18621611-18621150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 129
               

               
Conread position:
               
195-641
               

               
Cow position:
               
chr2:15769322-15769744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
69, 62
               

               
Conread position:
               
195-648
               

               
Cow position:
               
chr2:17114543-17114995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 30
               

               
Conread position:
               
195-649
               

               
Cow position:
               
chr2:39068478-39068043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 50
               

               
Conread position:
               
195-650
               

               
Cow position:
               
chr2:46188898-46189359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 354
               

               
Conread position:
               
195-650
               

               
Cow position:
               
chr2:64323436-64322988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 221
               

               
Conread position:
               
195-670
               

               
Cow position:
               
chr2:46344870-46344395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 73
               

               
Conread position:
               
195-672
               

               
Cow position:
               
chr2:26500740-26501229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 91
               

               
Conread position:
               
195-681
               

               
Cow position:
               
chr2:63273762-63274258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
214, 28
               

               
Conread position:
               
195-690
               

               
Cow position:
               
chr2:65928641-65929146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
515
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
57, 195
               

               
Conread position:
               
195-712
               

               
Cow position:
               
chr2:38965808-38965292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
532
               

               
Alignm identity:
               
401
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 30
               

               
Conread position:
               
195-714
               

               
Cow position:
               
chr2:7533582-7534110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
539
               

               
Alignm identity:
               
398
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 114
               

               
Conread position:
               
195-737
               

               
Cow position:
               
chr2:41019018-41019546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
551
               

               
Alignm identity:
               
384
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 211
               

               
Conread position:
               
195-742
               

               
Cow position:
               
chr2:76110590-76110026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
573
               

               
Alignm identity:
               
393
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 9
               

               
Conread position:
               
195-756
               

               
Cow position:
               
chr2:13001995-13001442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
577
               

               
Alignm identity:
               
425
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 64
               

               
Conread position:
               
195-758
               

               
Cow position:
               
chr2:44065763-44065216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
575
               

               
Alignm identity:
               
428
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 77
               

               
Conread position:
               
195-758
               

               
Cow position:
               
chr2:58074147-58074723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
582
               

               
Alignm identity:
               
421
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 99
               

               
Conread position:
               
195-763
               

               
Cow position:
               
chr2:48748550-48749093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
573
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
229, 51
               

               
Conread position:
               
195-772
               

               
Cow position:
               
chr2:43773405-43773968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
593
               

               
Alignm identity:
               
406
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 66
               

               
Conread position:
               
195-774
               

               
Cow position:
               
chr2:42255629-42255044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
594
               

               
Alignm identity:
               
428
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 231
               

               
Conread position:
               
195-794
               

               
Cow position:
               
chr2:2673729-2673114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
618
               

               
Alignm identity:
               
450
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 83
               

               
Conread position:
               
195-794
               

               
Cow position:
               
chr2:9173101-9173677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
616
               

               
Alignm identity:
               
438
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 26
               

               
Conread position:
               
195-794
               

               
Cow position:
               
chr2:18997915-18997322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
613
               

               
Alignm identity:
               
466
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 210
               

               
Conread position:
               
195-794
               

               
Cow position:
               
chr2:19494413-19493794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
629
               

               
Alignm identity:
               
467
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 363
               

               
Conread position:
               
195-794
               

               
Cow position:
               
chr2:34695415-34694826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
613
               

               
Alignm identity:
               
459
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 42
               

               
Conread position:
               
195-794
               

               
Cow position:
               
chr2:36055583-36056208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
636
               

               
Alignm identity:
               
462
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 22
               

               
Conread position:
               
195-794
               

               
Cow position:
               
chr2:41452432-41451817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
621
               

               
Alignm identity:
               
478
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 85
               

               
Conread position:
               
195-794
               

               
Cow position:
               
chr2:46312634-46312042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
621
               

               
Alignm identity:
               
448
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 33
               

               
Conread position:
               
195-794
               

               
Cow position:
               
chr2:58536818-58537380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
610
               

               
Alignm identity:
               
431
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
223, 62
               

               
Conread position:
               
195-794
               

               
Cow position:
               
chr2:61097095-61096500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
614
               

               
Alignm identity:
               
390
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
53, 79
               

               
Conread position:
               
195-794
               

               
Cow position:
               
chr2:63250214-63250801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
616
               

               
Alignm identity:
               
446
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 37
               

               
Conread position:
               
195-794
               

               
Cow position:
               
chr2:70908134-70908732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
620
               

               
Alignm identity:
               
419
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 152
               

               
Conread position:
               
195-794
               

               
Cow position:
               
chr2:71624199-71624793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
616
               

               
Alignm identity:
               
429
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 151
               

               
Conread position:
               
195-794
               

               
Cow position:
               
chr2:82580737-82581341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
611
               

               
Alignm identity:
               
462
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 99
               

               
Conread position:
               
196-303
               

               
Cow position:
               
chr2:9687323-9687432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
196-373
               

               
Cow position:
               
chr2:19164771-19164957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
196-598
               

               
Cow position:
               
chr2:44051506-44051093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 99
               

               
Conread position:
               
196-778
               

               
Cow position:
               
chr2:45574811-45575391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
594
               

               
Alignm identity:
               
441
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 184
               

               
Conread position:
               
196-782
               

               
Cow position:
               
chr2:44168261-44167668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
618
               

               
Alignm identity:
               
432
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 39
               

               
Conread position:
               
196-794
               

               
Cow position:
               
chr2:38658599-38659188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
614
               

               
Alignm identity:
               
441
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 31
               

               
Conread position:
               
197-502
               

               
Cow position:
               
chr2:25966704-25967011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
54, 105
               

               
Conread position:
               
197-507
               

               
Cow position:
               
chr2:10505415-10505746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
52, 43
               

               
Conread position:
               
197-549
               

               
Cow position:
               
chr2:78249936-78249572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 85
               

               
Conread position:
               
197-569
               

               
Cow position:
               
chr2:19328728-19328365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 78
               

               
Conread position:
               
197-722
               

               
Cow position:
               
chr2:56350715-56351255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
549
               

               
Alignm identity:
               
387
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 285
               

               
Conread position:
               
198-411
               

               
Cow position:
               
chr2:28330555-28330775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
198-498
               

               
Cow position:
               
chr2:45642297-45642604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 28
               

               
Conread position:
               
198-503
               

               
Cow position:
               
chr2:30351508-30351820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
51, 209
               

               
Conread position:
               
198-521
               

               
Cow position:
               
chr2:17805572-17805900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
52, 131
               

               
Conread position:
               
198-541
               

               
Cow position:
               
chr2:80865677-80866010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
228, 77
               

               
Conread position:
               
198-553
               

               
Cow position:
               
chr2:46052696-46052337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 178
               

               
Conread position:
               
198-585
               

               
Cow position:
               
chr2:16505274-16505674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 30
               

               
Conread position:
               
198-590
               

               
Cow position:
               
chr2:71621853-71622254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 157
               

               
Conread position:
               
198-600
               

               
Cow position:
               
chr2:21380208-21380615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 162
               

               
Conread position:
               
198-621
               

               
Cow position:
               
chr2:26042062-26042473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
54, 63
               

               
Conread position:
               
198-626
               

               
Cow position:
               
chr2:69579480-69579920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
52, 268
               

               
Conread position:
               
198-628
               

               
Cow position:
               
chr2:14555577-14555992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
211, 60
               

               
Conread position:
               
198-631
               

               
Cow position:
               
chr2:74249027-74249471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
52, 237
               

               
Conread position:
               
198-644
               

               
Cow position:
               
chr2:27173549-27173106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 28
               

               
Conread position:
               
198-649
               

               
Cow position:
               
chr2:66480004-66480439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
227, 39
               

               
Conread position:
               
198-649
               

               
Cow position:
               
chr2:73354002-73353526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 178
               

               
Conread position:
               
198-677
               

               
Cow position:
               
chr2:15568009-15568479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 61
               

               
Conread position:
               
198-707
               

               
Cow position:
               
chr2:32115258-32114742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
528
               

               
Alignm identity:
               
399
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 28
               

               
Conread position:
               
198-726
               

               
Cow position:
               
chr2:24007612-24007093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
541
               

               
Alignm identity:
               
383
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 80
               

               
Conread position:
               
198-733
               

               
Cow position:
               
chr2:51638729-51638196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
556
               

               
Alignm identity:
               
388
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 68
               

               
Conread position:
               
198-734
               

               
Cow position:
               
chr2:70664195-70663677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
542
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 61
               

               
Conread position:
               
198-763
               

               
Cow position:
               
chr2:45624227-45623646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
599
               

               
Alignm identity:
               
427
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 243
               

               
Conread position:
               
198-763
               

               
Cow position:
               
chr2:73282381-73282941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
583
               

               
Alignm identity:
               
398
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 149
               

               
Conread position:
               
198-770
               

               
Cow position:
               
chr2:15298730-15298155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
585
               

               
Alignm identity:
               
412
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 146
               

               
Conread position:
               
198-770
               

               
Cow position:
               
chr2:15674725-15674159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
580
               

               
Alignm identity:
               
411
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 99
               

               
Conread position:
               
198-790
               

               
Cow position:
               
chr2:44191693-44191073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
632
               

               
Alignm identity:
               
481
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 297
               

               
Conread position:
               
198-794
               

               
Cow position:
               
chr2:21559-22148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
609
               

               
Alignm identity:
               
454
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 43
               

               
Conread position:
               
198-794
               

               
Cow position:
               
chr2:42192620-42192038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
608
               

               
Alignm identity:
               
425
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 98
               

               
Conread position:
               
198-794
               

               
Cow position:
               
chr2:42801231-42800641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
606
               

               
Alignm identity:
               
457
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 168
               

               
Conread position:
               
199-578
               

               
Cow position:
               
chr2:60315157-60315537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 162
               

               
Conread position:
               
199-607
               

               
Cow position:
               
chr2:65902220-65901796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
50, 93
               

               
Conread position:
               
199-737
               

               
Cow position:
               
chr2:32446167-32446678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
555
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
32, 48
               

               
Conread position:
               
200-621
               

               
Cow position:
               
chr2:41461541-41461129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 12
               

               
Conread position:
               
200-770
               

               
Cow position:
               
chr2:54790476-54789888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
593
               

               
Alignm identity:
               
426
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 221
               

               
Conread position:
               
200-787
               

               
Cow position:
               
chr2:46202461-46201881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
608
               

               
Alignm identity:
               
459
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 203
               

               
Conread position:
               
200-794
               

               
Cow position:
               
chr2:31457663-31457078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
611
               

               
Alignm identity:
               
415
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 26
               

               
Conread position:
               
201-793
               

               
Cow position:
               
chr2:69419397-69419984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
615
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 31
               

               
Conread position:
               
202-318
               

               
Cow position:
               
chr2:47139357-47139240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
202-548
               

               
Cow position:
               
chr2:60910375-60910036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
56, 41
               

               
Conread position:
               
202-577
               

               
Cow position:
               
chr2:1762981-1762600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 10
               

               
Conread position:
               
202-794
               

               
Cow position:
               
chr2:44170749-44170148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
608
               

               
Alignm identity:
               
465
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 211
               

               
Conread position:
               
204-546
               

               
Cow position:
               
chr2:28257666-28257299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
45, 169
               

               
Conread position:
               
205-480
               

               
Cow position:
               
chr2:20931183-20930928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
44, 20
               

               
Conread position:
               
205-770
               

               
Cow position:
               
chr2:18061460-18062021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
577
               

               
Alignm identity:
               
394
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
192, 55
               

               
Conread position:
               
206-448
               

               
Cow position:
               
chr2:10440016-10439772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
44, 15
               

               
Conread position:
               
206-792
               

               
Cow position:
               
chr2:77157159-77157762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
608
               

               
Alignm identity:
               
436
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 157
               

               
Conread position:
               
207-524
               

               
Cow position:
               
chr2:59819625-59819943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
41, 49
               

               
Conread position:
               
207-540
               

               
Cow position:
               
chr2:45542215-45542551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 221
               

               
Conread position:
               
207-598
               

               
Cow position:
               
chr2:29160095-29159692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
42, 207
               

               
Conread position:
               
207-628
               

               
Cow position:
               
chr2:1658673-1658258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 124
               

               
Conread position:
               
207-764
               

               
Cow position:
               
chr2:64212366-64212935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
574
               

               
Alignm identity:
               
429
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 535
               

               
Conread position:
               
207-790
               

               
Cow position:
               
chr2:77467272-77467861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
603
               

               
Alignm identity:
               
435
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 21
               

               
Conread position:
               
207-792
               

               
Cow position:
               
chr2:39815109-39815687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
593
               

               
Alignm identity:
               
450
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 72
               

               
Conread position:
               
207-793
               

               
Cow position:
               
chr2:28710823-28711384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
591
               

               
Alignm identity:
               
406
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 14
               

               
Conread position:
               
207-794
               

               
Cow position:
               
chr2:25283300-25282695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
606
               

               
Alignm identity:
               
434
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
207-794
               

               
Cow position:
               
chr2:72528149-72527544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
609
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 471
               

               
Conread position:
               
208-463
               

               
Cow position:
               
chr2:63074678-63074939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
41, 103
               

               
Conread position:
               
208-480
               

               
Cow position:
               
chr2:69350382-69350664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
208-635
               

               
Cow position:
               
chr2:16428216-16428648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 153
               

               
Conread position:
               
210-794
               

               
Cow position:
               
chr2:47047570-47048161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
607
               

               
Alignm identity:
               
414
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 167
               

               
Conread position:
               
211-522
               

               
Cow position:
               
chr2:47148078-47147771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 48
               

               
Conread position:
               
211-794
               

               
Cow position:
               
chr2:50353071-50352443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
635
               

               
Alignm identity:
               
434
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 38
               

               
Conread position:
               
214-794
               

               
Cow position:
               
chr2:12802492-12803061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
602
               

               
Alignm identity:
               
397
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 56
               

               
Conread position:
               
216-590
               

               
Cow position:
               
chr2:29907023-29907393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 62
               

               
Conread position:
               
219-621
               

               
Cow position:
               
chr2:45535640-45535236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 75
               

               
Conread position:
               
223-792
               

               
Cow position:
               
chr2:53532660-53533215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
578
               

               
Alignm identity:
               
428
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 49
               

               
Conread position:
               
229-665
               

               
Cow position:
               
chr2:39501201-39500751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 303
               

               
Conread position:
               
247-770
               

               
Cow position:
               
chr2:10655720-10656228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
537
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 45
               

               
Conread position:
               
251-521
               

               
Cow position:
               
chr2:39237547-39237281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
43, 151
               

               
Conread position:
               
254-451
               

               
Cow position:
               
chr2:47443388-47443193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
254-589
               

               
Cow position:
               
chr2:7383562-7383882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
23, 29
               

               
Conread position:
               
254-794
               

               
Cow position:
               
chr2:43596027-43596579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
401
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 63
               

               
Conread position:
               
257-451
               

               
Cow position:
               
chr2:22042663-22042468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
46, 29
               

               
Conread position:
               
257-518
               

               
Cow position:
               
chr2:46406468-46406184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
257-520
               

               
Cow position:
               
chr2:39598091-39597827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
35, 63
               

               
Conread position:
               
257-553
               

               
Cow position:
               
chr2:70781215-70780927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
33, 40
               

               
Conread position:
               
257-790
               

               
Cow position:
               
chr2:85339335-85339873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
546
               

               
Alignm identity:
               
378
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
153, 29
               

               
Conread position:
               
259-763
               

               
Cow position:
               
chr2:46293913-46294414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 167
               

               
Conread position:
               
271-517
               

               
Cow position:
               
chr2:58563715-58563963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
25, 154
               

               
Conread position:
               
271-763
               

               
Cow position:
               
chr2:82311081-82311568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
33, 148
               

               
Conread position:
               
281-643
               

               
Cow position:
               
chr2:36878115-36878478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 190
               

               
Conread position:
               
281-672
               

               
Cow position:
               
chr2:14465456-14465839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
8, 38
               

               
Conread position:
               
281-794
               

               
Cow position:
               
chr2:55877494-55876989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
523
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 120
               

               
Conread position:
               
290-770
               

               
Cow position:
               
chr2:29269168-29268678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 250
               

               
Conread position:
               
291-649
               

               
Cow position:
               
chr2:45880682-45881033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 241
               

               
Conread position:
               
297-794
               

               
Cow position:
               
chr2:47645131-47644653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
306, 19
               

               
Conread position:
               
301-538
               

               
Cow position:
               
chr2:76764628-76764858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
121, 45
               

               
Conread position:
               
304-645
               

               
Cow position:
               
chr2:1756121-1755775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 240
               

               
Conread position:
               
304-794
               

               
Cow position:
               
chr2:38628985-38628505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 29
               

               
Conread position:
               
308-505
               

               
Cow position:
               
chr2:44222899-44222701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
308-665
               

               
Cow position:
               
chr2:48361647-48361283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 89
               

               
Conread position:
               
309-472
               

               
Cow position:
               
chr2:47893843-47894006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
99, 130
               

               
Conread position:
               
309-650
               

               
Cow position:
               
chr2:42927376-42927718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
294, 104
               

               
Conread position:
               
310-650
               

               
Cow position:
               
chr2:4273193-4273529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 8
               

               
Conread position:
               
312-553
               

               
Cow position:
               
chr2:72407426-72407659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
181, 75
               

               
Conread position:
               
312-793
               

               
Cow position:
               
chr2:61485694-61485226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
289, 102
               

               
Conread position:
               
312-794
               

               
Cow position:
               
chr2:42226191-42226681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 187
               

               
Conread position:
               
312-794
               

               
Cow position:
               
chr2:69747545-69748032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
383
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 226
               

               
Conread position:
               
313-776
               

               
Cow position:
               
chr2:2019358-2018905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
70, 116
               

               
Conread position:
               
313-794
               

               
Cow position:
               
chr2:30959972-30959485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 25
               

               
Conread position:
               
313-794
               

               
Cow position:
               
chr2:70525596-70525109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 68
               

               
Conread position:
               
314-757
               

               
Cow position:
               
chr2:38747728-38747292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
285, 91
               

               
Conread position:
               
315-442
               

               
Cow position:
               
chr2:44217841-44217967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
315-451
               

               
Cow position:
               
chr2:40466703-40466567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
315-453
               

               
Cow position:
               
chr2:40880136-40880001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
94, 36
               

               
Conread position:
               
315-467
               

               
Cow position:
               
chr2:45141481-45141323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
101, 52
               

               
Conread position:
               
315-472
               

               
Cow position:
               
chr2:30911389-30911233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
99, 137
               

               
Conread position:
               
315-472
               

               
Cow position:
               
chr2:58035175-58035018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
95, 132
               

               
Conread position:
               
315-479
               

               
Cow position:
               
chr2:47015268-47015430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
97, 43
               

               
Conread position:
               
315-498
               

               
Cow position:
               
chr2:7769565-7769396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
315-499
               

               
Cow position:
               
chr2:39798310-39798124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
315-501
               

               
Cow position:
               
chr2:46190910-46191091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
103, 93
               

               
Conread position:
               
315-504
               

               
Cow position:
               
chr2:56056816-56056627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
50, 110
               

               
Conread position:
               
315-506
               

               
Cow position:
               
chr2:12051219-12051027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
95, 38
               

               
Conread position:
               
315-510
               

               
Cow position:
               
chr2:62861656-62861463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
41, 97
               

               
Conread position:
               
315-514
               

               
Cow position:
               
chr2:42293321-42293121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
96, 50
               

               
Conread position:
               
315-514
               

               
Cow position:
               
chr2:58135324-58135526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
107, 133
               

               
Conread position:
               
315-517
               

               
Cow position:
               
chr2:54810787-54810987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
94, 17
               

               
Conread position:
               
315-519
               

               
Cow position:
               
chr2:44025445-44025237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
108, 25
               

               
Conread position:
               
315-529
               

               
Cow position:
               
chr2:20362587-20362789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
315-584
               

               
Cow position:
               
chr2:5130387-5130645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
182, 8
               

               
Conread position:
               
315-584
               

               
Cow position:
               
chr2:61421100-61421369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
157, 100
               

               
Conread position:
               
315-587
               

               
Cow position:
               
chr2:1638671-1638399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 29
               

               
Conread position:
               
315-587
               

               
Cow position:
               
chr2:83184222-83183943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
98, 114
               

               
Conread position:
               
315-601
               

               
Cow position:
               
chr2:44232385-44232668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 30
               

               
Conread position:
               
315-601
               

               
Cow position:
               
chr2:46948823-46949100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
47, 10
               

               
Conread position:
               
315-602
               

               
Cow position:
               
chr2:9325067-9324778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
102, 123
               

               
Conread position:
               
315-617
               

               
Cow position:
               
chr2:67609701-67610013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
47, 120
               

               
Conread position:
               
315-618
               

               
Cow position:
               
chr2:25597427-25597721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
284, 82
               

               
Conread position:
               
315-619
               

               
Cow position:
               
chr2:26806049-26806346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
103, 38
               

               
Conread position:
               
315-620
               

               
Cow position:
               
chr2:46374875-46375160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
110, 26
               

               
Conread position:
               
315-620
               

               
Cow position:
               
chr2:48863924-48864214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
287, 60
               

               
Conread position:
               
315-620
               

               
Cow position:
               
chr2:72183424-72183723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 155
               

               
Conread position:
               
315-621
               

               
Cow position:
               
chr2:53851504-53851198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
288, 24
               

               
Conread position:
               
315-621
               

               
Cow position:
               
chr2:80963582-80963879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
188, 38
               

               
Conread position:
               
315-628
               

               
Cow position:
               
chr2:39564421-39564112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
288, 14
               

               
Conread position:
               
315-628
               

               
Cow position:
               
chr2:44550781-44551075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
182, 35
               

               
Conread position:
               
315-628
               

               
Cow position:
               
chr2:62644655-62644358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
188, 98
               

               
Conread position:
               
315-630
               

               
Cow position:
               
chr2:19287014-19287320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 123
               

               
Conread position:
               
315-637
               

               
Cow position:
               
chr2:45666101-45665779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 237
               

               
Conread position:
               
315-645
               

               
Cow position:
               
chr2:41954954-41954617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
315-646
               

               
Cow position:
               
chr2:43790168-43789857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
316, 145
               

               
Conread position:
               
315-650
               

               
Cow position:
               
chr2:26102835-26102513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
182, 93
               

               
Conread position:
               
315-656
               

               
Cow position:
               
chr2:54789842-54789505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 64
               

               
Conread position:
               
315-685
               

               
Cow position:
               
chr2:46230695-46231066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 89
               

               
Conread position:
               
315-695
               

               
Cow position:
               
chr2:74260526-74260147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 99
               

               
Conread position:
               
315-709
               

               
Cow position:
               
chr2:28303387-28302998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
187, 96
               

               
Conread position:
               
315-724
               

               
Cow position:
               
chr2:1300327-1300721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 36
               

               
Conread position:
               
315-732
               

               
Cow position:
               
chr2:30642595-30643013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 105
               

               
Conread position:
               
315-734
               

               
Cow position:
               
chr2:45439502-45439108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
288, 29
               

               
Conread position:
               
315-734
               

               
Cow position:
               
chr2:80324779-80325198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 213
               

               
Conread position:
               
315-741
               

               
Cow position:
               
chr2:52344819-52344404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 79
               

               
Conread position:
               
315-769
               

               
Cow position:
               
chr2:23120701-23121141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 63
               

               
Conread position:
               
315-769
               

               
Cow position:
               
chr2:40402959-40403399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 132
               

               
Conread position:
               
315-782
               

               
Cow position:
               
chr2:17444866-17444380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 131
               

               
Conread position:
               
315-788
               

               
Cow position:
               
chr2:45912564-45913040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 269
               

               
Conread position:
               
315-792
               

               
Cow position:
               
chr2:549262-549727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
303, 36
               

               
Conread position:
               
315-792
               

               
Cow position:
               
chr2:4254467-4254954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 93
               

               
Conread position:
               
315-792
               

               
Cow position:
               
chr2:21416365-21415902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 36
               

               
Conread position:
               
315-793
               

               
Cow position:
               
chr2:41185126-41184656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 121
               

               
Conread position:
               
315-794
               

               
Cow position:
               
chr2:988754-988280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
288, 37
               

               
Conread position:
               
315-794
               

               
Cow position:
               
chr2:6697435-6697880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 37
               

               
Conread position:
               
315-794
               

               
Cow position:
               
chr2:10867824-10868324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 8
               

               
Conread position:
               
315-794
               

               
Cow position:
               
chr2:14089861-14089369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 0
               

               
Conread position:
               
315-794
               

               
Cow position:
               
chr2:16514845-16514378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
183, 18
               

               
Conread position:
               
315-794
               

               
Cow position:
               
chr2:22254111-22254572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
288, 106
               

               
Conread position:
               
315-794
               

               
Cow position:
               
chr2:38273618-38273128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 218
               

               
Conread position:
               
315-794
               

               
Cow position:
               
chr2:39263555-39263073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 39
               

               
Conread position:
               
315-794
               

               
Cow position:
               
chr2:39941543-39941085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
288, 63
               

               
Conread position:
               
315-794
               

               
Cow position:
               
chr2:43609050-43609504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
288, 91
               

               
Conread position:
               
315-794
               

               
Cow position:
               
chr2:44081504-44081037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 8
               

               
Conread position:
               
315-794
               

               
Cow position:
               
chr2:59952791-59953264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
162, 98
               

               
Conread position:
               
315-794
               

               
Cow position:
               
chr2:70945472-70944988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 139
               

               
Conread position:
               
315-796
               

               
Cow position:
               
chr2:1352056-1352522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
283, 82
               

               
Conread position:
               
316-495
               

               
Cow position:
               
chr2:67927728-67927906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
316-512
               

               
Cow position:
               
chr2:17409940-17410133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
177, 84
               

               
Conread position:
               
316-515
               

               
Cow position:
               
chr2:15391845-15391656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
159, 83
               

               
Conread position:
               
316-516
               

               
Cow position:
               
chr2:16481794-16481994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
182, 63
               

               
Conread position:
               
316-518
               

               
Cow position:
               
chr2:45281717-45281518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
316-528
               

               
Cow position:
               
chr2:13036185-13035971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
172, 0
               

               
Conread position:
               
316-535
               

               
Cow position:
               
chr2:69367060-69367282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
187, 0
               

               
Conread position:
               
316-545
               

               
Cow position:
               
chr2:32350865-32351083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
316-545
               

               
Cow position:
               
chr2:84970646-84970868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
46, 99
               

               
Conread position:
               
316-551
               

               
Cow position:
               
chr2:5999014-5998780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
112, 98
               

               
Conread position:
               
316-553
               

               
Cow position:
               
chr2:8354881-8355111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
316-553
               

               
Cow position:
               
chr2:35664773-35664540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
186, 98
               

               
Conread position:
               
316-553
               

               
Cow position:
               
chr2:61962397-61962622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
182, 26
               

               
Conread position:
               
316-559
               

               
Cow position:
               
chr2:46135289-46135039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
67, 160
               

               
Conread position:
               
316-562
               

               
Cow position:
               
chr2:58869096-58869335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
69, 55
               

               
Conread position:
               
316-562
               

               
Cow position:
               
chr2:86191436-86191674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
181, 26
               

               
Conread position:
               
316-574
               

               
Cow position:
               
chr2:58057127-58056879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
185, 39
               

               
Conread position:
               
316-577
               

               
Cow position:
               
chr2:51098018-51098278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
111, 213
               

               
Conread position:
               
316-580
               

               
Cow position:
               
chr2:25757560-25757824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
95, 107
               

               
Conread position:
               
316-586
               

               
Cow position:
               
chr2:13000979-13000724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
182, 42
               

               
Conread position:
               
316-589
               

               
Cow position:
               
chr2:43735393-43735126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
231, 106
               

               
Conread position:
               
316-594
               

               
Cow position:
               
chr2:73637105-73637383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
124, 133
               

               
Conread position:
               
316-599
               

               
Cow position:
               
chr2:16564745-16564472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
181, 35
               

               
Conread position:
               
316-602
               

               
Cow position:
               
chr2:42936142-42936427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
94, 174
               

               
Conread position:
               
316-621
               

               
Cow position:
               
chr2:68877191-68876904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
8, 78
               

               
Conread position:
               
316-628
               

               
Cow position:
               
chr2:16839703-16839392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
111, 222
               

               
Conread position:
               
316-628
               

               
Cow position:
               
chr2:59180141-59179815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
84, 175
               

               
Conread position:
               
316-636
               

               
Cow position:
               
chr2:66403864-66404181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
184, 111
               

               
Conread position:
               
316-638
               

               
Cow position:
               
chr2:36436274-36435946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
316-645
               

               
Cow position:
               
chr2:82019060-82019372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
176, 98
               

               
Conread position:
               
316-650
               

               
Cow position:
               
chr2:24434213-24434552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 76
               

               
Conread position:
               
316-651
               

               
Cow position:
               
chr2:82262309-82262643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
95, 106
               

               
Conread position:
               
316-653
               

               
Cow position:
               
chr2:47090829-47090499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 151
               

               
Conread position:
               
316-656
               

               
Cow position:
               
chr2:35483380-35483728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
48, 96
               

               
Conread position:
               
316-657
               

               
Cow position:
               
chr2:70539305-70539650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
184, 97
               

               
Conread position:
               
316-677
               

               
Cow position:
               
chr2:6323803-6324166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
177, 35
               

               
Conread position:
               
316-695
               

               
Cow position:
               
chr2:33497137-33497516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 96
               

               
Conread position:
               
316-723
               

               
Cow position:
               
chr2:48525473-48525881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
12, 108
               

               
Conread position:
               
316-726
               

               
Cow position:
               
chr2:65932032-65931630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 97
               

               
Conread position:
               
316-755
               

               
Cow position:
               
chr2:65269623-65270066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 122
               

               
Conread position:
               
316-764
               

               
Cow position:
               
chr2:39078445-39077996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
184, 161
               

               
Conread position:
               
316-770
               

               
Cow position:
               
chr2:30113088-30112628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 9
               

               
Conread position:
               
316-776
               

               
Cow position:
               
chr2:81791498-81791970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 109
               

               
Conread position:
               
316-792
               

               
Cow position:
               
chr2:7524065-7524545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 307
               

               
Conread position:
               
316-792
               

               
Cow position:
               
chr2:14854372-14853917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
306, 37
               

               
Conread position:
               
316-792
               

               
Cow position:
               
chr2:47115852-47116314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
287, 103
               

               
Conread position:
               
316-792
               

               
Cow position:
               
chr2:50278091-50277613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 63
               

               
Conread position:
               
316-794
               

               
Cow position:
               
chr2:21644384-21644865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 67
               

               
Conread position:
               
316-794
               

               
Cow position:
               
chr2:41147935-41147464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 213
               

               
Conread position:
               
316-794
               

               
Cow position:
               
chr2:46909369-46909833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 163
               

               
Conread position:
               
316-794
               

               
Cow position:
               
chr2:49608659-49608181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 241
               

               
Conread position:
               
316-794
               

               
Cow position:
               
chr2:69223153-69223642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
184, 125
               
UCSC Genome Browser

               
Conread position:
               
316-794
               

               
Cow position:
               
chr2:69676464-69676946 (view  custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 85
               
UCSC Genome Browser

               
               
               
Conread position:
316-794

               
               
               
Cow position:
chr2:70674792-70674326 (view  custom track)

               
               
               
Alignm length:
482

               
               
               
Alignm identity:
347

               
               
               
Alignm E-value:
0

               
               
               
Alignm gaps (pig, cow):
112, 17
UCSC Genome Browser

               
               
               
Conread position:
316-794

               
               
               
Cow position:
chr2:76340584-76341077 (view  custom track)

               
               
               
Alignm length:
499

               
               
               
Alignm identity:
364

               
               
               
Alignm E-value:
0

               
               
               
Alignm gaps (pig, cow):
79, 85

               
               
               Conread position:317-449
               
               
               Cow position:chr2:16492710-16492580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:103
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):95, 116

               
               
               Conread position:317-516
               
               
               Cow position:chr2:44005022-44004825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):186, 28

               
               
               Conread position:317-589
               
               
               Cow position:chr2:4655032-4655301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 37

               
               
               Conread position:317-607
               
               
               Cow position:chr2:61136798-61136509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):181, 128

               
               
               Conread position:317-628
               
               
               Cow position:chr2:28653470-28653772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:216
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):175, 64

               
               
               Conread position:317-641
               
               
               Cow position:chr2:54971245-54970930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 155

               
               
               Conread position:317-649
               
               
               Cow position:chr2:15694271-15693964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:248
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):286, 15

               
               
               Conread position:317-650
               
               
               Cow position:chr2:85926124-85925798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):286, 97

               
               
               Conread position:317-706
               
               
               Cow position:chr2:74353965-74353581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 103

               
               
               Conread position:317-789
               
               
               Cow position:chr2:6539172-6539643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 108

               
               
               Conread position:317-794
               
               
               Cow position:chr2:68487940-68488416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 69

               
               
               Conread position:318-521
               
               
               Cow position:chr2:62309364-62309565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):38, 20

               
               
               Conread position:318-547
               
               
               Cow position:chr2:46247396-46247622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:318-553
               
               
               Cow position:chr2:25448393-25448162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 129

               
               
               Conread position:318-558
               
               
               Cow position:chr2:30144781-30144552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 34

               
               
               Conread position:318-606
               
               
               Cow position:chr2:47624342-47624616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 33

               
               
               Conread position:318-609
               
               
               Cow position:chr2:68970804-68970511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 83

               
               
               Conread position:318-621
               
               
               Cow position:chr2:793712-793413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:208
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):82, 169

               
               
               Conread position:318-661
               
               
               Cow position:chr2:53430784-53430453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):188, 94

               
               
               Conread position:318-724
               
               
               Cow position:chr2:1210699-1211109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 7

               
               
               Conread position:318-770
               
               
               Cow position:chr2:10356608-10357056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 19

               
               
               Conread position:318-793
               
               
               Cow position:chr2:70579638-70580127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 338

               
               
               Conread position:318-794
               
               
               Cow position:chr2:9687508-9687972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):183, 108

               
               
               Conread position:318-794
               
               
               Cow position:chr2:20900398-20900880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):185, 85

               
               
               Conread position:318-794
               
               
               Cow position:chr2:36105335-36104845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 63

               
               
               Conread position:319-628
               
               
               Cow position:chr2:30955775-30956075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:202
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):183, 88

               
               
               Conread position:320-521
               
               
               Cow position:chr2:6901839-6901641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):108, 38

               
               
               Conread position:320-564
               
               
               Cow position:chr2:1035846-1036078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):92, 57

               
               
               Conread position:321-496
               
               
               Cow position:chr2:50614224-50614393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):90, 23

               
               
               Conread position:322-545
               
               
               Cow position:chr2:67313628-67313850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:322-622
               
               
               Cow position:chr2:34535096-34535393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 84

               
               
               Conread position:322-760
               
               
               Cow position:chr2:75561900-75561460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 111

               
               
               Conread position:323-770
               
               
               Cow position:chr2:40691542-40691101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):280, 28

               
               
               Conread position:325-521
               
               
               Cow position:chr2:14313253-14313056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):141, 28

               
               
               Conread position:325-648
               
               
               Cow position:chr2:57393234-57393560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:229
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):176, 135

               
               
               Conread position:325-763
               
               
               Cow position:chr2:2589891-2590321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 51

               
               
               Conread position:328-628
               
               
               Cow position:chr2:11617150-11616858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):169, 69

               
               
               Conread position:328-708
               
               
               Cow position:chr2:37920729-37921103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 70

               
               
               Conread position:328-770
               
               
               Cow position:chr2:50445957-50445508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 445

               
               
               Conread position:328-794
               
               
               Cow position:chr2:11806374-11805908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):251, 85

               
               
               Conread position:328-794
               
               
               Cow position:chr2:51824979-51824529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 11

               
               
               Conread position:328-794
               
               
               Cow position:chr2:61974852-61974372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):275, 23

               
               
               Conread position:329-655
               
               
               Cow position:chr2:46243964-46244298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):168, 0

               
               
               Conread position:330-723
               
               
               Cow position:chr2:76969129-76969516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 67

               
               
               Conread position:332-794
               
               
               Cow position:chr2:69238330-69237862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 208

               
               
               Conread position:333-794
               
               
               Cow position:chr2:23493585-23493127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):164, 20

               
               
               Conread position:335-628
               
               
               Cow position:chr2:28118549-28118260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 168

               
               
               Conread position:336-744
               
               
               Cow position:chr2:39848700-39848286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:247
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):69, 228

               
               
               Conread position:339-537
               
               
               Cow position:chr2:66563186-66563386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):23, 81

               
               
               Conread position:339-794
               
               
               Cow position:chr2:51920754-51921209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):163, 13

               
               
               Conread position:342-493
               
               
               Cow position:chr2:42265650-42265803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):61, 131

               
               
               Conread position:342-521
               
               
               Cow position:chr2:81894300-81894489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:138
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):91, 72

               
               
               Conread position:342-560
               
               
               Cow position:chr2:19594763-19594540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):55, 142

               
               
               Conread position:342-626
               
               
               Cow position:chr2:46175219-46175515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:212
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):85, 57

               
               
               Conread position:342-628
               
               
               Cow position:chr2:43577756-43578038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):260, 85

               
               
               Conread position:342-628
               
               
               Cow position:chr2:46194836-46194554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 68

               
               
               Conread position:342-794
               
               
               Cow position:chr2:14806300-14806747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 121

               
               
               Conread position:343-613
               
               
               Cow position:chr2:55960571-55960834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):94, 71

               
               
               Conread position:349-506
               
               
               Cow position:chr2:69828802-69828957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:117
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):154, 38

               
               
               Conread position:349-789
               
               
               Cow position:chr2:23847791-23848214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 102

               
               
               Conread position:353-794
               
               
               Cow position:chr2:305820-306257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):147, 12

               
               
               Conread position:354-705
               
               
               Cow position:chr2:21284962-21284617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):249, 67

               
               
               Conread position:357-650
               
               
               Cow position:chr2:77378270-77377969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):207, 42

               
               
               Conread position:358-639
               
               
               Cow position:chr2:63568391-63568116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:214
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):63, 29

               
               
               Conread position:359-639
               
               
               Cow position:chr2:46994732-46995008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 76

               
               
               Conread position:361-540
               
               
               Cow position:chr2:63709128-63708946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):21, 72

               
               
               Conread position:361-650
               
               
               Cow position:chr2:66614888-66615189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 7

               
               
               Conread position:363-579
               
               
               Cow position:chr2:46353466-46353685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:166
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):39, 186

               
               
               Conread position:363-611
               
               
               Cow position:chr2:39368845-39368590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):59, 40

               
               
               Conread position:363-619
               
               
               Cow position:chr2:68716648-68716901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):236, 175

               
               
               Conread position:363-632
               
               
               Cow position:chr2:76182791-76183052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):58, 80

               
               
               Conread position:363-635
               
               
               Cow position:chr2:6232625-6232373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):134, 34

               
               
               Conread position:363-649
               
               
               Cow position:chr2:41185489-41185205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):143, 50

               
               
               Conread position:363-650
               
               
               Cow position:chr2:25928477-25928186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:212
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):5, 73

               
               
               Conread position:363-650
               
               
               Cow position:chr2:40882092-40881824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):240, 46

               
               
               Conread position:363-670
               
               
               Cow position:chr2:29882719-29883024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:217
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):64, 50

               
               
               Conread position:363-794
               
               
               Cow position:chr2:23348834-23348402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):139, 58

               
               
               Conread position:363-794
               
               
               Cow position:chr2:39052004-39051574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 128

               
               
               Conread position:363-794
               
               
               Cow position:chr2:63865305-63865738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 295

               
               
               Conread position:363-794
               
               
               Cow position:chr2:85091013-85091447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):135, 75

               
               
               Conread position:364-502
               
               
               Cow position:chr2:55062905-55062768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:364-594
               
               
               Cow position:chr2:2382535-2382769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):54, 44

               
               
               Conread position:364-757
               
               
               Cow position:chr2:56102435-56102843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:365-560
               
               
               Cow position:chr2:21078600-21078403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:167
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:365-607
               
               
               Cow position:chr2:47119657-47119405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:194
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):44, 179

               
               
               Conread position:365-628
               
               
               Cow position:chr2:42309533-42309795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):34, 119

               
               
               Conread position:365-707
               
               
               Cow position:chr2:41710882-41710564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:248
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):59, 81

               
               
               Conread position:365-770
               
               
               Cow position:chr2:31910007-31910406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 112

               
               
               Conread position:365-773
               
               
               Cow position:chr2:82656687-82656282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):137, 62

               
               
               Conread position:366-632
               
               
               Cow position:chr2:40836151-40836409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):33, 28

               
               
               Conread position:367-585
               
               
               Cow position:chr2:37424080-37424304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:367-622
               
               
               Cow position:chr2:82937285-82937536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):61, 41

               
               
               Conread position:367-645
               
               
               Cow position:chr2:50400443-50400161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:203
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):44, 173

               
               
               Conread position:368-572
               
               
               Cow position:chr2:83410524-83410322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):132, 55

               
               
               Conread position:368-632
               
               
               Cow position:chr2:62685656-62685390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 178

               
               
               Conread position:368-650
               
               
               Cow position:chr2:42938283-42938567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 26

               
               
               Conread position:369-622
               
               
               Cow position:chr2:1203699-1203446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 44

               
               
               Conread position:369-622
               
               
               Cow position:chr2:69770519-69770268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 39

               
               
               Conread position:369-628
               
               
               Cow position:chr2:54890334-54890080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):42, 110

               
               
               Conread position:369-639
               
               
               Cow position:chr2:80797679-80797419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:208
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):234, 46

               
               
               Conread position:369-712
               
               
               Cow position:chr2:50777783-50777463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 14

               
               
               Conread position:369-734
               
               
               Cow position:chr2:36007572-36007924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):234, 44

               
               
               Conread position:369-794
               
               
               Cow position:chr2:27076724-27076291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 39

               
               
               Conread position:369-794
               
               
               Cow position:chr2:46184251-46184685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 331

               
               
               Conread position:370-770
               
               
               Cow position:chr2:52385903-52386308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 150

               
               
               Conread position:371-586
               
               
               Cow position:chr2:30586623-30586411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:171
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):38, 61

               
               
               Conread position:373-552
               
               
               Cow position:chr2:78220109-78219929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):58, 126

               
               
               Conread position:373-623
               
               
               Cow position:chr2:60922961-60923210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):55, 183

               
               
               Conread position:373-694
               
               
               Cow position:chr2:6952206-6951900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:237
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):37, 78

               
               
               Conread position:373-794
               
               
               Cow position:chr2:39384864-39385272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):226, 40

               
               
               Conread position:374-638
               
               
               Cow position:chr2:25964477-25964737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 143

               
               
               Conread position:375-601
               
               
               Cow position:chr2:80869095-80868869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):52, 17

               
               
               Conread position:378-628
               
               
               Cow position:chr2:85930465-85930216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):34, 18

               
               
               Conread position:378-634
               
               
               Cow position:chr2:46020910-46020662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 36

               
               
               Conread position:378-650
               
               
               Cow position:chr2:47138845-47138570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 30

               
               
               Conread position:379-557
               
               
               Cow position:chr2:60903148-60902973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):29, 125

               
               
               Conread position:379-584
               
               
               Cow position:chr2:59915220-59915026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):49, 13

               
               
               Conread position:379-621
               
               
               Cow position:chr2:1134384-1134628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 47

               
               
               Conread position:379-673
               
               
               Cow position:chr2:45311113-45311417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 283

               
               
               Conread position:382-645
               
               
               Cow position:chr2:73069728-73069455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:382-782
               
               
               Cow position:chr2:21355848-21356244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 55

               
               
               Conread position:383-561
               
               
               Cow position:chr2:41422649-41422470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:383-577
               
               
               Cow position:chr2:25722495-25722299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):43, 24

               
               
               Conread position:383-789
               
               
               Cow position:chr2:46362825-46362417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 37

               
               
               Conread position:383-793
               
               
               Cow position:chr2:36072962-36073365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 51

               
               
               Conread position:384-720
               
               
               Cow position:chr2:6884224-6883890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 29

               
               
               Conread position:384-723
               
               
               Cow position:chr2:71922228-71921888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 31

               
               
               Conread position:384-794
               
               
               Cow position:chr2:38259460-38259861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 44

               
               
               Conread position:387-782
               
               
               Cow position:chr2:22081681-22081282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 51

               
               
               Conread position:387-794
               
               
               Cow position:chr2:60471186-60470771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 137

               
               
               Conread position:388-622
               
               
               Cow position:chr2:22969139-22968913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):25, 60

               
               
               Conread position:389-723
               
               
               Cow position:chr2:60238287-60237957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 8

               
               
               Conread position:390-545
               
               
               Cow position:chr2:45537442-45537596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):91, 22

               
               
               Conread position:391-794
               
               
               Cow position:chr2:42394415-42394023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 118

               
               
               Conread position:393-681
               
               
               Cow position:chr2:45554304-45554017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):210, 20

               
               
               Conread position:394-562
               
               
               Cow position:chr2:81484633-81484464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:119
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:394-691
               
               
               Cow position:chr2:8723735-8724030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):108, 171

               
               
               Conread position:394-717
               
               
               Cow position:chr2:82647828-82648137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:232
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):28, 152

               
               
               Conread position:395-611
               
               
               Cow position:chr2:28318867-28319076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:164
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):108, 26

               
               
               Conread position:397-744
               
               
               Cow position:chr2:47066595-47066941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):199, 15

               
               
               Conread position:397-794
               
               
               Cow position:chr2:48069412-48069809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 26

               
               
               Conread position:398-601
               
               
               Cow position:chr2:19154295-19154095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):10, 149

               
               
               Conread position:398-780
               
               
               Cow position:chr2:57975177-57974800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 16

               
               
               Conread position:398-792
               
               
               Cow position:chr2:77359466-77359066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 37

               
               
               Conread position:398-794
               
               
               Cow position:chr2:982764-982366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 29

               
               
               Conread position:398-794
               
               
               Cow position:chr2:21616560-21616945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 35

               
               
               Conread position:398-794
               
               
               Cow position:chr2:22163322-22162924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 15

               
               
               Conread position:398-796
               
               
               Cow position:chr2:65603940-65604340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 80

               
               
               Conread position:399-639
               
               
               Cow position:chr2:355330-355580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):18, 34

               
               
               Conread position:399-656
               
               
               Cow position:chr2:68084497-68084241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 29

               
               
               Conread position:399-663
               
               
               Cow position:chr2:33972427-33972157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):22, 33

               
               
               Conread position:399-716
               
               
               Cow position:chr2:1278381-1278683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):103, 28

               
               
               Conread position:400-622
               
               
               Cow position:chr2:46359056-46359283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):36, 126

               
               
               Conread position:400-627
               
               
               Cow position:chr2:53395087-53395313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:154
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):102, 31

               
               
               Conread position:400-783
               
               
               Cow position:chr2:45259100-45259476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):202, 24

               
               
               Conread position:402-791
               
               
               Cow position:chr2:69581523-69581916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 266

               
               
               Conread position:402-794
               
               
               Cow position:chr2:78744683-78744290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):201, 12

               
               
               Conread position:403-578
               
               
               Cow position:chr2:76122479-76122654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):90, 150

               
               
               Conread position:403-618
               
               
               Cow position:chr2:64226419-64226203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:403-794
               
               
               Cow position:chr2:59886678-59886305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:266
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):10, 23

               
               
               Conread position:403-794
               
               
               Cow position:chr2:71495373-71494950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:287
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):73, 62

               
               
               Conread position:404-639
               
               
               Cow position:chr2:64973045-64972825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):8, 73

               
               
               Conread position:404-794
               
               
               Cow position:chr2:24148921-24148531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:270
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):99, 10

               
               
               Conread position:405-621
               
               
               Cow position:chr2:32393395-32393184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):13, 142

               
               
               Conread position:405-689
               
               
               Cow position:chr2:2151-2417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):198, 66

               
               
               Conread position:405-760
               
               
               Cow position:chr2:74236309-74236676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:252
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):96, 27

               
               
               Conread position:406-645
               
               
               Cow position:chr2:11900409-11900168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 66

               
               
               Conread position:406-792
               
               
               Cow position:chr2:818563-818172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):167, 157

               
               
               Conread position:407-579
               
               
               Cow position:chr2:6298129-6298302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:407-755
               
               
               Cow position:chr2:27600565-27600917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 60

               
               
               Conread position:407-794
               
               
               Cow position:chr2:1364910-1365305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 19

               
               
               Conread position:408-718
               
               
               Cow position:chr2:18889408-18889728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:409-628
               
               
               Cow position:chr2:37220224-37220001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:409-650
               
               
               Cow position:chr2:85246353-85246599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:189
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):57, 130

               
               
               Conread position:409-724
               
               
               Cow position:chr2:27613045-27613367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 161

               
               
               Conread position:414-645
               
               
               Cow position:chr2:25283786-25283548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:414-645
               
               
               Cow position:chr2:25285530-25285292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:414-706
               
               
               Cow position:chr2:61187156-61187445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:226
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):10, 33

               
               
               Conread position:414-770
               
               
               Cow position:chr2:76822278-76822642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 132

               
               
               Conread position:415-557
               
               
               Cow position:chr2:68239203-68239060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):135, 0

               
               
               Conread position:415-639
               
               
               Cow position:chr2:20980367-20980144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):83, 48

               
               
               Conread position:415-734
               
               
               Cow position:chr2:42599901-42599574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):188, 0

               
               
               Conread position:415-775
               
               
               Cow position:chr2:49344683-49344323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 121

               
               
               Conread position:415-794
               
               
               Cow position:chr2:24435053-24435433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):188, 247

               
               
               Conread position:416-601
               
               
               Cow position:chr2:78229787-78229606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):81, 112

               
               
               Conread position:416-643
               
               
               Cow position:chr2:64830817-64830595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):82, 62

               
               
               Conread position:416-664
               
               
               Cow position:chr2:41949997-41949742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 144

               
               
               Conread position:416-726
               
               
               Cow position:chr2:13342012-13342323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 47

               
               
               Conread position:416-790
               
               
               Cow position:chr2:24709373-24709755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 47

               
               
               Conread position:416-792
               
               
               Cow position:chr2:55387518-55387141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 86

               
               
               Conread position:416-794
               
               
               Cow position:chr2:893736-894115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 122

               
               
               Conread position:416-794
               
               
               Cow position:chr2:84997290-84996906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 247

               
               
               Conread position:417-635
               
               
               Cow position:chr2:103553-103774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):6, 123

               
               
               Conread position:417-794
               
               
               Cow position:chr2:42837265-42837645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 149

               
               
               Conread position:417-794
               
               
               Cow position:chr2:49448917-49449297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 73

               
               
               Conread position:419-794
               
               
               Cow position:chr2:71163749-71164130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 27

               
               
               Conread position:420-734
               
               
               Cow position:chr2:15571566-15571883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 30

               
               
               Conread position:420-793
               
               
               Cow position:chr2:48617946-48617561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):183, 276

               
               
               Conread position:421-552
               
               
               Cow position:chr2:70306122-70305994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:103
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:421-583
               
               
               Cow position:chr2:17493353-17493518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:421-632
               
               
               Cow position:chr2:14396279-14396485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):17, 70

               
               
               Conread position:422-580
               
               
               Cow position:chr2:47152571-47152731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:423-761
               
               
               Cow position:chr2:32406642-32406296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 61

               
               
               Conread position:424-593
               
               
               Cow position:chr2:41443365-41443201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):75, 52

               
               
               Conread position:424-649
               
               
               Cow position:chr2:34492395-34492178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):179, 80

               
               
               Conread position:425-628
               
               
               Cow position:chr2:36630932-36630728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:167
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):73, 118

               
               
               Conread position:426-655
               
               
               Cow position:chr2:39807825-39808070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):50, 115

               
               
               Conread position:426-792
               
               
               Cow position:chr2:57509362-57509004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 51

               
               
               Conread position:427-734
               
               
               Cow position:chr2:16693112-16692809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 51

               
               
               Conread position:429-792
               
               
               Cow position:chr2:60956326-60955977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 12

               
               
               Conread position:430-637
               
               
               Cow position:chr2:80903973-80904175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:162
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:430-771
               
               
               Cow position:chr2:85067165-85067513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:233
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:431-589
               
               
               Cow position:chr2:77082812-77082971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:114
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:431-661
               
               
               Cow position:chr2:485571-485343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):72, 10

               
               
               Conread position:431-695
               
               
               Cow position:chr2:22506907-22507177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:431-763
               
               
               Cow position:chr2:15335036-15335370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 128

               
               
               Conread position:431-794
               
               
               Cow position:chr2:62272977-62273341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 92

               
               
               Conread position:432-562
               
               
               Cow position:chr2:33241462-33241593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:99
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:432-589
               
               
               Cow position:chr2:43745799-43745642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):70, 115

               
               
               Conread position:432-647
               
               
               Cow position:chr2:28456202-28455985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):70, 78

               
               
               Conread position:432-651
               
               
               Cow position:chr2:38495583-38495358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:432-715
               
               
               Cow position:chr2:31488707-31488425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:210
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):70, 91

               
               
               Conread position:432-724
               
               
               Cow position:chr2:57921156-57921453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:215
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):68, 133

               
               
               Conread position:432-741
               
               
               Cow position:chr2:19015037-19014722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:432-763
               
               
               Cow position:chr2:76187358-76187695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:432-769
               
               
               Cow position:chr2:33318212-33318549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):70, 126

               
               
               Conread position:432-779
               
               
               Cow position:chr2:53333348-53332997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 105

               
               
               Conread position:432-785
               
               
               Cow position:chr2:72993123-72993484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:249
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):70, 102

               
               
               Conread position:432-791
               
               
               Cow position:chr2:10640800-10640444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 133

               
               
               Conread position:432-792
               
               
               Cow position:chr2:30141336-30140968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:432-792
               
               
               Cow position:chr2:65024242-65023887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 98

               
               
               Conread position:432-793
               
               
               Cow position:chr2:10469345-10468979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 233

               
               
               Conread position:432-794
               
               
               Cow position:chr2:3624239-3623875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):170, 64

               
               
               Conread position:432-794
               
               
               Cow position:chr2:5901016-5901383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 301

               
               
               Conread position:432-794
               
               
               Cow position:chr2:16496406-16496768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:241
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):68, 113

               
               
               Conread position:432-794
               
               
               Cow position:chr2:21981036-21981404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:432-794
               
               
               Cow position:chr2:25025933-25025569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 66

               
               
               Conread position:432-794
               
               
               Cow position:chr2:31505898-31506265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 57

               
               
               Conread position:432-794
               
               
               Cow position:chr2:33080073-33080428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:251
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):61, 205

               
               
               Conread position:432-794
               
               
               Cow position:chr2:58025256-58024902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:261
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):70, 86

               
               
               Conread position:432-794
               
               
               Cow position:chr2:76984204-76984563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 105

               
               
               Conread position:432-794
               
               
               Cow position:chr2:77860028-77859671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 86

               
               
               Conread position:433-562
               
               
               Cow position:chr2:51160462-51160592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:433-601
               
               
               Cow position:chr2:26157760-26157926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):60, 19

               
               
               Conread position:433-628
               
               
               Cow position:chr2:56037104-56036908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):69, 146

               
               
               Conread position:433-756
               
               
               Cow position:chr2:31382689-31382365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 177

               
               
               Conread position:433-794
               
               
               Cow position:chr2:82526861-82527224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 89

               
               
               Conread position:434-646
               
               
               Cow position:chr2:53658041-53658257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:158
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:435-785
               
               
               Cow position:chr2:78300157-78300509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:244
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):67, 58

               
               
               Conread position:436-794
               
               
               Cow position:chr2:17808950-17808589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 226

               
               
               Conread position:436-794
               
               
               Cow position:chr2:46181820-46182181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:437-735
               
               
               Cow position:chr2:49156778-49157080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:211
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):165, 256

               
               
               Conread position:438-727
               
               
               Cow position:chr2:29716881-29717189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:227
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):59, 271

               
               
               Conread position:438-794
               
               
               Cow position:chr2:14884230-14883872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):165, 108

               
               
               Conread position:440-643
               
               
               Cow position:chr2:908371-908184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):181, 31

               
               
               Conread position:441-604
               
               
               Cow position:chr2:37535042-37535206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:441-794
               
               
               Cow position:chr2:4922181-4922536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 41

               
               
               Conread position:446-641
               
               
               Cow position:chr2:11840371-11840174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):51, 64

               
               
               Conread position:446-650
               
               
               Cow position:chr2:2689105-2688906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):157, 80

               
               
               Conread position:451-713
               
               
               Cow position:chr2:53575037-53574779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 92

               
               
               Conread position:452-711
               
               
               Cow position:chr2:1095831-1095578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:194
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):171, 100

               
               
               Conread position:461-794
               
               
               Cow position:chr2:85740044-85739719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 67

               
               
               Conread position:477-792
               
               
               Cow position:chr2:30910334-30910002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 0
Show alignments to all cow chromosomes.