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Cow genome map

           
Conread name:
           
Ova1-OVRM10016H10
        

               
Conread position:
               
122-412
               

               
Cow position:
               
chr5:7698192-7697893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
113, 22
               

               
Conread position:
               
135-490
               

               
Cow position:
               
chr5:34528727-34528371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
68, 38
               

               
Conread position:
               
144-288
               

               
Cow position:
               
chr5:34288081-34288223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
44, 29
               

               
Conread position:
               
144-296
               

               
Cow position:
               
chr5:54312774-54312619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
144-297
               

               
Cow position:
               
chr5:26147763-26147609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
96, 34
               

               
Conread position:
               
144-357
               

               
Cow position:
               
chr5:17602032-17602242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
83, 121
               

               
Conread position:
               
144-488
               

               
Cow position:
               
chr5:7044533-7044899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 24
               

               
Conread position:
               
144-490
               

               
Cow position:
               
chr5:21829040-21828674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 86
               

               
Conread position:
               
145-490
               

               
Cow position:
               
chr5:66339245-66338893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
148, 28
               

               
Conread position:
               
149-445
               

               
Cow position:
               
chr5:70951726-70952021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
144, 24
               

               
Conread position:
               
150-451
               

               
Cow position:
               
chr5:19278544-19278851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
84, 23
               

               
Conread position:
               
150-490
               

               
Cow position:
               
chr5:31640592-31640237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
84, 91
               

               
Conread position:
               
150-490
               

               
Cow position:
               
chr5:65776217-65776576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
50, 210
               

               
Conread position:
               
151-490
               

               
Cow position:
               
chr5:57737263-57736924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
88, 23
               

               
Conread position:
               
151-491
               

               
Cow position:
               
chr5:12710032-12709694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
75, 104
               

               
Conread position:
               
154-351
               

               
Cow position:
               
chr5:58446967-58446771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
79, 19
               

               
Conread position:
               
154-361
               

               
Cow position:
               
chr5:23678540-23678747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
79, 60
               

               
Conread position:
               
154-363
               

               
Cow position:
               
chr5:24136875-24136666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
86, 19
               

               
Conread position:
               
154-363
               

               
Cow position:
               
chr5:40242207-40241995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
31, 78
               

               
Conread position:
               
154-409
               

               
Cow position:
               
chr5:14920766-14921039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
32, 17
               

               
Conread position:
               
154-419
               

               
Cow position:
               
chr5:49440714-49440991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
92, 8
               

               
Conread position:
               
154-419
               

               
Cow position:
               
chr5:60599042-60599304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
30, 50
               

               
Conread position:
               
154-430
               

               
Cow position:
               
chr5:44726174-44726456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
80, 16
               

               
Conread position:
               
154-434
               

               
Cow position:
               
chr5:25495195-25495482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
86, 270
               

               
Conread position:
               
154-440
               

               
Cow position:
               
chr5:25035095-25035382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
79, 100
               

               
Conread position:
               
154-441
               

               
Cow position:
               
chr5:4166803-4166521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 63
               

               
Conread position:
               
154-490
               

               
Cow position:
               
chr5:9089865-9090214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
80, 57
               

               
Conread position:
               
154-490
               

               
Cow position:
               
chr5:46509701-46510057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
35, 287
               

               
Conread position:
               
154-490
               

               
Cow position:
               
chr5:53835878-53835524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 24
               

               
Conread position:
               
154-490
               

               
Cow position:
               
chr5:57626954-57626616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 117
               

               
Conread position:
               
155-296
               

               
Cow position:
               
chr5:29149050-29148910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
78, 99
               

               
Conread position:
               
155-362
               

               
Cow position:
               
chr5:29912583-29912371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
22, 56
               

               
Conread position:
               
155-362
               

               
Cow position:
               
chr5:56338859-56339066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
79, 169
               

               
Conread position:
               
155-363
               

               
Cow position:
               
chr5:458652-458444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
23, 152
               

               
Conread position:
               
155-490
               

               
Cow position:
               
chr5:1247425-1247086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
79, 100
               

               
Conread position:
               
155-490
               

               
Cow position:
               
chr5:5110907-5111267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 165
               

               
Conread position:
               
155-490
               

               
Cow position:
               
chr5:43929574-43929924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 121
               

               
Conread position:
               
155-490
               

               
Cow position:
               
chr5:44993887-44994228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
79, 108
               

               
Conread position:
               
157-356
               

               
Cow position:
               
chr5:66531075-66530877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
81, 28
               

               
Conread position:
               
157-490
               

               
Cow position:
               
chr5:35685097-35684744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 99
               

               
Conread position:
               
158-493
               

               
Cow position:
               
chr5:69337979-69337634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 166
               

               
Conread position:
               
159-261
               

               
Cow position:
               
chr5:49207169-49207273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
105
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
159-281
               

               
Cow position:
               
chr5:46421746-46421620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
159-288
               

               
Cow position:
               
chr5:38647798-38647667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
159-313
               

               
Cow position:
               
chr5:38169053-38168897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
56, 148
               

               
Conread position:
               
159-324
               

               
Cow position:
               
chr5:34914895-34915062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
75, 160
               

               
Conread position:
               
159-324
               

               
Cow position:
               
chr5:46540900-46541065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
68, 24
               

               
Conread position:
               
159-341
               

               
Cow position:
               
chr5:61875695-61875517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
80, 109
               

               
Conread position:
               
159-357
               

               
Cow position:
               
chr5:49341891-49342090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
74, 189
               

               
Conread position:
               
159-359
               

               
Cow position:
               
chr5:69099879-69099675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
159-360
               

               
Cow position:
               
chr5:72006331-72006537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
159-362
               

               
Cow position:
               
chr5:60016324-60016121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
18, 98
               

               
Conread position:
               
159-363
               

               
Cow position:
               
chr5:17086862-17087069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
27, 193
               

               
Conread position:
               
159-363
               

               
Cow position:
               
chr5:36038844-36039053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
75, 19
               

               
Conread position:
               
159-363
               

               
Cow position:
               
chr5:55956070-55955860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
70, 30
               

               
Conread position:
               
159-363
               

               
Cow position:
               
chr5:59626812-59627021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
26, 53
               

               
Conread position:
               
159-363
               

               
Cow position:
               
chr5:70271025-70270812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
22, 14
               

               
Conread position:
               
159-365
               

               
Cow position:
               
chr5:31052551-31052337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
27, 178
               

               
Conread position:
               
159-433
               

               
Cow position:
               
chr5:22667230-22666960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 145
               

               
Conread position:
               
159-434
               

               
Cow position:
               
chr5:991632-991332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
72, 166
               

               
Conread position:
               
159-450
               

               
Cow position:
               
chr5:12673320-12673610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
81, 97
               

               
Conread position:
               
159-458
               

               
Cow position:
               
chr5:45397727-45397420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 93
               

               
Conread position:
               
159-464
               

               
Cow position:
               
chr5:58519254-58519569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
19, 156
               

               
Conread position:
               
159-471
               

               
Cow position:
               
chr5:30628999-30629330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 41
               

               
Conread position:
               
159-477
               

               
Cow position:
               
chr5:44028147-44028479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 98
               

               
Conread position:
               
159-482
               

               
Cow position:
               
chr5:74016103-74015757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
16, 121
               

               
Conread position:
               
159-488
               

               
Cow position:
               
chr5:56071018-56070664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
159-489
               

               
Cow position:
               
chr5:65753019-65752667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
159-489
               

               
Cow position:
               
chr5:72895844-72895503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
73, 170
               

               
Conread position:
               
159-490
               

               
Cow position:
               
chr5:5856014-5855689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
81, 19
               

               
Conread position:
               
159-490
               

               
Cow position:
               
chr5:20779241-20779572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
81, 19
               

               
Conread position:
               
159-490
               

               
Cow position:
               
chr5:35969690-35969352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 118
               

               
Conread position:
               
159-490
               

               
Cow position:
               
chr5:44796575-44796909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
68, 156
               

               
Conread position:
               
159-490
               

               
Cow position:
               
chr5:45845530-45845886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 44
               

               
Conread position:
               
159-490
               

               
Cow position:
               
chr5:47601970-47601626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
159-490
               

               
Cow position:
               
chr5:64139721-64139372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
159-490
               

               
Cow position:
               
chr5:65941093-65941444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 37
               

               
Conread position:
               
159-514
               

               
Cow position:
               
chr5:23168668-23169034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 284
               

               
Conread position:
               
160-320
               

               
Cow position:
               
chr5:44874349-44874187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
74, 49
               

               
Conread position:
               
160-341
               

               
Cow position:
               
chr5:57230182-57230365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
82, 15
               

               
Conread position:
               
160-351
               

               
Cow position:
               
chr5:22795369-22795178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
72, 14
               

               
Conread position:
               
160-355
               

               
Cow position:
               
chr5:20288103-20288303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
36, 162
               

               
Conread position:
               
160-454
               

               
Cow position:
               
chr5:35246953-35247265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
79, 143
               

               
Conread position:
               
160-462
               

               
Cow position:
               
chr5:16205998-16206318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
74, 104
               

               
Conread position:
               
160-482
               

               
Cow position:
               
chr5:39447375-39447713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
160-489
               

               
Cow position:
               
chr5:24996064-24996415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 156
               

               
Conread position:
               
161-291
               

               
Cow position:
               
chr5:35190266-35190134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
161-302
               

               
Cow position:
               
chr5:55942223-55942367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
161-328
               

               
Cow position:
               
chr5:51298555-51298727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
22, 94
               

               
Conread position:
               
161-351
               

               
Cow position:
               
chr5:57686581-57686776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
76, 69
               

               
Conread position:
               
161-372
               

               
Cow position:
               
chr5:55795812-55796021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
72, 9
               

               
Conread position:
               
161-490
               

               
Cow position:
               
chr5:37646388-37646741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
76, 258
               

               
Conread position:
               
162-490
               

               
Cow position:
               
chr5:9893969-9894316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 22
               

               
Conread position:
               
162-490
               

               
Cow position:
               
chr5:61726116-61725779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 28
               

               
Conread position:
               
162-491
               

               
Cow position:
               
chr5:69461490-69461143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
164-286
               

               
Cow position:
               
chr5:37842125-37842250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
164-490
               

               
Cow position:
               
chr5:4219009-4218687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
131, 8
               

               
Conread position:
               
165-317
               

               
Cow position:
               
chr5:50824743-50824589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
69, 13
               

               
Conread position:
               
165-318
               

               
Cow position:
               
chr5:69636376-69636220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
165-360
               

               
Cow position:
               
chr5:66551744-66551943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
165-362
               

               
Cow position:
               
chr5:30233054-30232858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
69, 30
               

               
Conread position:
               
165-362
               

               
Cow position:
               
chr5:64591943-64592142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
69, 154
               

               
Conread position:
               
165-363
               

               
Cow position:
               
chr5:67118572-67118371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
165-450
               

               
Cow position:
               
chr5:12351659-12351935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
65, 18
               

               
Conread position:
               
165-455
               

               
Cow position:
               
chr5:65967579-65967887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
165-456
               

               
Cow position:
               
chr5:42050705-42050391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
165-490
               

               
Cow position:
               
chr5:40109644-40109311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 306
               

               
Conread position:
               
165-493
               

               
Cow position:
               
chr5:57074178-57074529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 279
               

               
Conread position:
               
166-313
               

               
Cow position:
               
chr5:9170433-9170580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
61, 24
               

               
Conread position:
               
166-351
               

               
Cow position:
               
chr5:51065682-51065496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
22, 112
               

               
Conread position:
               
166-363
               

               
Cow position:
               
chr5:68719021-68718822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
19, 79
               

               
Conread position:
               
166-473
               

               
Cow position:
               
chr5:50600199-50599880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 270
               

               
Conread position:
               
166-477
               

               
Cow position:
               
chr5:12322654-12322978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 93
               

               
Conread position:
               
167-490
               

               
Cow position:
               
chr5:28302593-28302930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
167-490
               

               
Cow position:
               
chr5:64175976-64176311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
168-324
               

               
Cow position:
               
chr5:9233839-9234000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
168-350
               

               
Cow position:
               
chr5:49501675-49501859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
66, 152
               

               
Conread position:
               
168-355
               

               
Cow position:
               
chr5:61102865-61102675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
66, 115
               

               
Conread position:
               
168-372
               

               
Cow position:
               
chr5:35982586-35982797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
17, 155
               

               
Conread position:
               
168-490
               

               
Cow position:
               
chr5:50533239-50533573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
122, 74
               

               
Conread position:
               
168-493
               

               
Cow position:
               
chr5:22242616-22242979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 86
               

               
Conread position:
               
169-490
               

               
Cow position:
               
chr5:5257140-5257487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
74, 249
               

               
Conread position:
               
170-313
               

               
Cow position:
               
chr5:45126799-45126652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
172-463
               

               
Cow position:
               
chr5:74580934-74580629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
69, 160
               

               
Conread position:
               
172-491
               

               
Cow position:
               
chr5:56524319-56523982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 312
               

               
Conread position:
               
173-333
               

               
Cow position:
               
chr5:17104994-17104833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
60, 81
               

               
Conread position:
               
173-441
               

               
Cow position:
               
chr5:57101639-57101917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
56, 17
               

               
Conread position:
               
173-450
               

               
Cow position:
               
chr5:56877626-56877338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
47, 74
               

               
Conread position:
               
173-455
               

               
Cow position:
               
chr5:55232669-55232948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
31, 81
               

               
Conread position:
               
173-490
               

               
Cow position:
               
chr5:58789-59119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
173-490
               

               
Cow position:
               
chr5:43457387-43457709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
60, 94
               

               
Conread position:
               
173-490
               

               
Cow position:
               
chr5:55966739-55967073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
61, 23
               

               
Conread position:
               
173-490
               

               
Cow position:
               
chr5:72564908-72564571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
57, 269
               

               
Conread position:
               
174-301
               

               
Cow position:
               
chr5:2240848-2240976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
65, 95
               

               
Conread position:
               
174-355
               

               
Cow position:
               
chr5:71724442-71724261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
61, 79
               

               
Conread position:
               
174-361
               

               
Cow position:
               
chr5:54767766-54767954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
65, 140
               

               
Conread position:
               
174-363
               

               
Cow position:
               
chr5:12434686-12434486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
68, 138
               

               
Conread position:
               
174-363
               

               
Cow position:
               
chr5:54375359-54375554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
174-363
               

               
Cow position:
               
chr5:62378923-62378744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
59, 80
               

               
Conread position:
               
174-392
               

               
Cow position:
               
chr5:35976653-35976429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
118, 68
               

               
Conread position:
               
174-434
               

               
Cow position:
               
chr5:44446722-44447002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
174-436
               

               
Cow position:
               
chr5:66366658-66366381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
28, 81
               

               
Conread position:
               
174-468
               

               
Cow position:
               
chr5:30949772-30950088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
174-482
               

               
Cow position:
               
chr5:30253884-30253559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 143
               

               
Conread position:
               
174-482
               

               
Cow position:
               
chr5:37808520-37808847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
59, 236
               

               
Conread position:
               
174-488
               

               
Cow position:
               
chr5:11229530-11229862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
47, 92
               

               
Conread position:
               
174-489
               

               
Cow position:
               
chr5:69731643-69731328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
59, 80
               

               
Conread position:
               
174-490
               

               
Cow position:
               
chr5:4280591-4280273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
59, 149
               

               
Conread position:
               
174-490
               

               
Cow position:
               
chr5:6045439-6045097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
174-490
               

               
Cow position:
               
chr5:36868878-36868555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
64, 39
               

               
Conread position:
               
174-490
               

               
Cow position:
               
chr5:41545750-41546084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
60, 88
               

               
Conread position:
               
174-490
               

               
Cow position:
               
chr5:52165036-52165373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
53, 41
               

               
Conread position:
               
174-490
               

               
Cow position:
               
chr5:56028398-56028721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
60, 104
               

               
Conread position:
               
174-490
               

               
Cow position:
               
chr5:66257780-66257452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
12, 83
               

               
Conread position:
               
175-363
               

               
Cow position:
               
chr5:60183947-60183754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
175-490
               

               
Cow position:
               
chr5:14314670-14314331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
175-490
               

               
Cow position:
               
chr5:44053913-44054228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
63, 55
               

               
Conread position:
               
175-503
               

               
Cow position:
               
chr5:63987304-63987652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
59, 76
               

               
Conread position:
               
177-297
               

               
Cow position:
               
chr5:26167561-26167439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
177-363
               

               
Cow position:
               
chr5:17554893-17555079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
57, 35
               

               
Conread position:
               
177-470
               

               
Cow position:
               
chr5:43992464-43992150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
57, 141
               

               
Conread position:
               
177-477
               

               
Cow position:
               
chr5:65136403-65136106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
9, 22
               

               
Conread position:
               
177-481
               

               
Cow position:
               
chr5:46512629-46512948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
63, 53
               

               
Conread position:
               
177-487
               

               
Cow position:
               
chr5:16893632-16893963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
57, 17
               

               
Conread position:
               
177-490
               

               
Cow position:
               
chr5:3492324-3492011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
45, 144
               

               
Conread position:
               
177-490
               

               
Cow position:
               
chr5:30276830-30276501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
177-490
               

               
Cow position:
               
chr5:35826741-35826400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
62, 13
               

               
Conread position:
               
177-490
               

               
Cow position:
               
chr5:38833261-38832929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 98
               

               
Conread position:
               
177-490
               

               
Cow position:
               
chr5:67212500-67212188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
57, 21
               

               
Conread position:
               
178-363
               

               
Cow position:
               
chr5:43403042-43402853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
56, 18
               

               
Conread position:
               
178-366
               

               
Cow position:
               
chr5:56153754-56153564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
65, 89
               

               
Conread position:
               
178-369
               

               
Cow position:
               
chr5:56517243-56517049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
56, 75
               

               
Conread position:
               
178-438
               

               
Cow position:
               
chr5:64026880-64027146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
56, 146
               

               
Conread position:
               
178-458
               

               
Cow position:
               
chr5:25230880-25231166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
136, 35
               

               
Conread position:
               
178-459
               

               
Cow position:
               
chr5:3582699-3582413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
56, 152
               

               
Conread position:
               
178-463
               

               
Cow position:
               
chr5:14629666-14629979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
178-470
               

               
Cow position:
               
chr5:56014870-56014564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
178-482
               

               
Cow position:
               
chr5:8820874-8821194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
64, 82
               

               
Conread position:
               
178-490
               

               
Cow position:
               
chr5:4710013-4710333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
56, 82
               

               
Conread position:
               
178-490
               

               
Cow position:
               
chr5:7193555-7193241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 24
               

               
Conread position:
               
178-490
               

               
Cow position:
               
chr5:15364021-15363700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
178-490
               

               
Cow position:
               
chr5:16025329-16025651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
52, 78
               

               
Conread position:
               
178-490
               

               
Cow position:
               
chr5:22643093-22643408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
115, 65
               

               
Conread position:
               
178-490
               

               
Cow position:
               
chr5:26467767-26467429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
178-490
               

               
Cow position:
               
chr5:34562156-34561818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
52, 137
               

               
Conread position:
               
178-490
               

               
Cow position:
               
chr5:43923023-43923340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
118, 35
               

               
Conread position:
               
178-490
               

               
Cow position:
               
chr5:50943017-50943344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
178-490
               

               
Cow position:
               
chr5:64823191-64823503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
114, 52
               

               
Conread position:
               
178-508
               

               
Cow position:
               
chr5:39258644-39258324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
54, 71
               

               
Conread position:
               
179-327
               

               
Cow position:
               
chr5:69383392-69383243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
55, 15
               

               
Conread position:
               
179-412
               

               
Cow position:
               
chr5:49474406-49474657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
179-441
               

               
Cow position:
               
chr5:20422055-20422320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
54, 77
               

               
Conread position:
               
179-490
               

               
Cow position:
               
chr5:21617596-21617265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
51, 161
               

               
Conread position:
               
179-490
               

               
Cow position:
               
chr5:41165226-41164898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
55, 246
               

               
Conread position:
               
179-490
               

               
Cow position:
               
chr5:62172549-62172228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 11
               

               
Conread position:
               
179-491
               

               
Cow position:
               
chr5:29352989-29353321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
49, 24
               

               
Conread position:
               
180-490
               

               
Cow position:
               
chr5:15426675-15426335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
54, 108
               

               
Conread position:
               
180-490
               

               
Cow position:
               
chr5:20783759-20783434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
53, 91
               

               
Conread position:
               
181-363
               

               
Cow position:
               
chr5:62142812-62142627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
181-482
               

               
Cow position:
               
chr5:64321885-64321566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
59, 34
               

               
Conread position:
               
181-482
               

               
Cow position:
               
chr5:67244054-67243743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
46, 83
               

               
Conread position:
               
181-493
               

               
Cow position:
               
chr5:6528821-6528486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
38, 313
               

               
Conread position:
               
182-482
               

               
Cow position:
               
chr5:57575909-57575583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
14, 155
               

               
Conread position:
               
183-297
               

               
Cow position:
               
chr5:75228065-75228182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
183-450
               

               
Cow position:
               
chr5:50821917-50821633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 150
               

               
Conread position:
               
183-477
               

               
Cow position:
               
chr5:6286299-6286604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
51, 136
               

               
Conread position:
               
183-482
               

               
Cow position:
               
chr5:29903389-29903704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
51, 308
               

               
Conread position:
               
183-490
               

               
Cow position:
               
chr5:15721940-15722245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
51, 153
               

               
Conread position:
               
183-490
               

               
Cow position:
               
chr5:30303025-30302705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
57, 73
               

               
Conread position:
               
183-490
               

               
Cow position:
               
chr5:45804194-45803870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 33
               

               
Conread position:
               
183-490
               

               
Cow position:
               
chr5:63992038-63992353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 145
               

               
Conread position:
               
183-490
               

               
Cow position:
               
chr5:74003501-74003818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
56, 78
               

               
Conread position:
               
184-490
               

               
Cow position:
               
chr5:27306437-27306128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
50, 148
               

               
Conread position:
               
184-503
               

               
Cow position:
               
chr5:7755438-7755756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
58, 10
               

               
Conread position:
               
185-349
               

               
Cow position:
               
chr5:26549008-26549175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
185-413
               

               
Cow position:
               
chr5:42670732-42670969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
49, 139
               

               
Conread position:
               
187-477
               

               
Cow position:
               
chr5:34625090-34624791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
52, 129
               

               
Conread position:
               
187-490
               

               
Cow position:
               
chr5:15598108-15598424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 50
               

               
Conread position:
               
187-490
               

               
Cow position:
               
chr5:56518092-56518400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
47, 127
               

               
Conread position:
               
187-490
               

               
Cow position:
               
chr5:57934978-57935304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 144
               

               
Conread position:
               
190-363
               

               
Cow position:
               
chr5:26150294-26150468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
47, 36
               

               
Conread position:
               
190-489
               

               
Cow position:
               
chr5:42744907-42744604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
116, 33
               

               
Conread position:
               
190-489
               

               
Cow position:
               
chr5:48009732-48010036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
44, 158
               

               
Conread position:
               
190-490
               

               
Cow position:
               
chr5:33538001-33537700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 128
               

               
Conread position:
               
198-361
               

               
Cow position:
               
chr5:58793488-58793654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
36, 117
               

               
Conread position:
               
199-490
               

               
Cow position:
               
chr5:20407560-20407857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
201-487
               

               
Cow position:
               
chr5:51357410-51357691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
153, 29
               

               
Conread position:
               
202-490
               

               
Cow position:
               
chr5:43737848-43738142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
32, 147
               

               
Conread position:
               
205-458
               

               
Cow position:
               
chr5:46425743-46426009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
205-463
               

               
Cow position:
               
chr5:41009892-41010160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
25, 64
               

               
Conread position:
               
209-439
               

               
Cow position:
               
chr5:31918750-31918509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
34, 113
               

               
Conread position:
               
214-362
               

               
Cow position:
               
chr5:43408255-43408405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
220-463
               

               
Cow position:
               
chr5:69520988-69520727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
10, 94
               

               
Conread position:
               
236-490
               

               
Cow position:
               
chr5:34505847-34506116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
237-362
               

               
Cow position:
               
chr5:63192663-63192788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
56, 18
               

               
Conread position:
               
237-422
               

               
Cow position:
               
chr5:50799612-50799418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
123, 61
               

               
Conread position:
               
237-473
               

               
Cow position:
               
chr5:31144709-31144954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
56, 169
               

               
Conread position:
               
237-489
               

               
Cow position:
               
chr5:34638962-34638696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
59, 80
               

               
Conread position:
               
237-489
               

               
Cow position:
               
chr5:66404211-66403954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
121, 18
               

               
Conread position:
               
237-490
               

               
Cow position:
               
chr5:65601535-65601270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
56, 89
               

               
Conread position:
               
239-490
               

               
Cow position:
               
chr5:35449312-35449063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
54, 74
               

               
Conread position:
               
239-490
               

               
Cow position:
               
chr5:63185178-63185444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
38, 58
               

               
Conread position:
               
240-359
               

               
Cow position:
               
chr5:45472357-45472237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
255-391
               

               
Cow position:
               
chr5:61068451-61068315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
41, 90
               

               
Conread position:
               
256-456
               

               
Cow position:
               
chr5:23866112-23866317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
37, 55
               

               
Conread position:
               
262-463
               

               
Cow position:
               
chr5:27015733-27015517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
31, 51
               

               
Conread position:
               
266-488
               

               
Cow position:
               
chr5:60126422-60126185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
27, 157
               

               
Conread position:
               
266-488
               

               
Cow position:
               
chr5:70050791-70050564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
27, 50
               

               
Conread position:
               
266-490
               

               
Cow position:
               
chr5:62826703-62826944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
27, 50
               

               
Conread position:
               
267-434
               

               
Cow position:
               
chr5:1779237-1779405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
26, 16
               

               
Conread position:
               
273-490
               

               
Cow position:
               
chr5:34916173-34915951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
22, 161
               

               
Conread position:
               
281-490
               

               
Cow position:
               
chr5:19470156-19470377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
13, 36
               

               
Conread position:
               
286-490
               

               
Cow position:
               
chr5:59443219-59443442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
315-490
               

               
Cow position:
               
chr5:39418808-39418973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
18, 45
               

               
Conread position:
               
332-490
               

               
Cow position:
               
chr5:24836976-24837136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
343-473
               

               
Cow position:
               
chr5:45025958-45026091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
345-488
               

               
Cow position:
               
chr5:26377711-26377855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
9, 45
               

               
Conread position:
               
345-488
               

               
Cow position:
               
chr5:43474805-43474659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
352-490
               

               
Cow position:
               
chr5:8994617-8994756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
21, 34
               

               
Conread position:
               
353-490
               

               
Cow position:
               
chr5:12672081-12672217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
19, 66
               

               
Conread position:
               
353-490
               

               
Cow position:
               
chr5:32963681-32963820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
20, 38
               

               
Conread position:
               
353-490
               

               
Cow position:
               
chr5:55942447-55942588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
357-458
               

               
Cow position:
               
chr5:39872792-39872690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
103
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
55, 0
               
Show alignments to all cow chromosomes.