Cow genome map
| Conread name: | Ova1-OVRM10029H02 |
| Conread position: | 40-321 |
| Cow position: | chr5:51369581-51369294 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 59, 50 |
| Conread position: | 41-464 |
| Cow position: | chr5:3502675-3502260 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 253 |
| Conread position: | 41-575 |
| Cow position: | chr5:4070648-4071160 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 148 |
| Conread position: | 41-664 |
| Cow position: | chr5:46777825-46778420 (view UCSC Genome Browser custom track) |
| Alignm length: | 629 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 286 |
| Conread position: | 41-786 |
| Cow position: | chr5:6153466-6152738 (view UCSC Genome Browser custom track) |
| Alignm length: | 757 |
| Alignm identity: | 536 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 287 |
| Conread position: | 41-786 |
| Cow position: | chr5:24100081-24100802 (view UCSC Genome Browser custom track) |
| Alignm length: | 752 |
| Alignm identity: | 516 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 182 |
| Conread position: | 41-786 |
| Cow position: | chr5:30580767-30581490 (view UCSC Genome Browser custom track) |
| Alignm length: | 753 |
| Alignm identity: | 521 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 198 |
| Conread position: | 42-253 |
| Cow position: | chr5:20108333-20108548 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 121 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 42-323 |
| Cow position: | chr5:987636-987349 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 43-440 |
| Cow position: | chr5:58549454-58549839 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 284 |
| Conread position: | 44-247 |
| Cow position: | chr5:31122152-31121947 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 86, 160 |
| Conread position: | 44-248 |
| Cow position: | chr5:75625130-75625338 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 87, 160 |
| Conread position: | 44-273 |
| Cow position: | chr5:14658016-14657789 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 87, 41 |
| Conread position: | 44-290 |
| Cow position: | chr5:23230415-23230657 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 168 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 87, 102 |
| Conread position: | 44-296 |
| Cow position: | chr5:12681616-12681363 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 239, 75 |
| Conread position: | 44-319 |
| Cow position: | chr5:12642000-12641724 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 75, 142 |
| Conread position: | 44-397 |
| Cow position: | chr5:47829642-47829283 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 284 |
| Conread position: | 44-443 |
| Cow position: | chr5:23686481-23686081 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 265 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 258, 59 |
| Conread position: | 44-463 |
| Cow position: | chr5:50871042-50871450 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 243 |
| Conread position: | 44-465 |
| Cow position: | chr5:1665366-1665764 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 284 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 44-575 |
| Cow position: | chr5:47893132-47892629 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 351 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 85, 183 |
| Conread position: | 44-663 |
| Cow position: | chr5:18274187-18274788 (view UCSC Genome Browser custom track) |
| Alignm length: | 636 |
| Alignm identity: | 434 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 239, 76 |
| Conread position: | 44-786 |
| Cow position: | chr5:2975225-2975933 (view UCSC Genome Browser custom track) |
| Alignm length: | 749 |
| Alignm identity: | 496 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 214 |
| Conread position: | 44-786 |
| Cow position: | chr5:3965888-3966589 (view UCSC Genome Browser custom track) |
| Alignm length: | 748 |
| Alignm identity: | 504 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 238, 80 |
| Conread position: | 44-786 |
| Cow position: | chr5:10774828-10774106 (view UCSC Genome Browser custom track) |
| Alignm length: | 750 |
| Alignm identity: | 523 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 266 |
| Conread position: | 44-786 |
| Cow position: | chr5:31707998-31708739 (view UCSC Genome Browser custom track) |
| Alignm length: | 770 |
| Alignm identity: | 523 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 176 |
| Conread position: | 44-786 |
| Cow position: | chr5:58191327-58190603 (view UCSC Genome Browser custom track) |
| Alignm length: | 754 |
| Alignm identity: | 526 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 137 |
| Conread position: | 45-464 |
| Cow position: | chr5:6587153-6586744 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 284 |
| Conread position: | 45-619 |
| Cow position: | chr5:32166707-32166140 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 235 |
| Conread position: | 45-764 |
| Cow position: | chr5:59062071-59062773 (view UCSC Genome Browser custom track) |
| Alignm length: | 730 |
| Alignm identity: | 520 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 283 |
| Conread position: | 47-654 |
| Cow position: | chr5:55629421-55630010 (view UCSC Genome Browser custom track) |
| Alignm length: | 613 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 247 |
| Conread position: | 50-198 |
| Cow position: | chr5:35301539-35301689 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 50-207 |
| Cow position: | chr5:41376413-41376254 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 117 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 50-217 |
| Cow position: | chr5:7810809-7810640 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 50-583 |
| Cow position: | chr5:10813309-10812795 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 277 |
| Conread position: | 50-599 |
| Cow position: | chr5:306973-306443 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 282 |
| Conread position: | 50-693 |
| Cow position: | chr5:37378567-37379196 (view UCSC Genome Browser custom track) |
| Alignm length: | 647 |
| Alignm identity: | 450 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 244 |
| Conread position: | 50-784 |
| Cow position: | chr5:4684364-4683648 (view UCSC Genome Browser custom track) |
| Alignm length: | 742 |
| Alignm identity: | 520 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 261 |
| Conread position: | 50-784 |
| Cow position: | chr5:40131161-40130441 (view UCSC Genome Browser custom track) |
| Alignm length: | 744 |
| Alignm identity: | 525 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 254 |
| Conread position: | 50-786 |
| Cow position: | chr5:4756742-4756024 (view UCSC Genome Browser custom track) |
| Alignm length: | 746 |
| Alignm identity: | 526 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 277 |
| Conread position: | 50-786 |
| Cow position: | chr5:10841940-10841238 (view UCSC Genome Browser custom track) |
| Alignm length: | 745 |
| Alignm identity: | 512 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 245 |
| Conread position: | 50-786 |
| Cow position: | chr5:18121041-18120322 (view UCSC Genome Browser custom track) |
| Alignm length: | 746 |
| Alignm identity: | 532 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 277 |
| Conread position: | 50-786 |
| Cow position: | chr5:32774206-32774930 (view UCSC Genome Browser custom track) |
| Alignm length: | 746 |
| Alignm identity: | 521 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 261 |
| Conread position: | 55-410 |
| Cow position: | chr5:35527371-35527718 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 242 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 74, 107 |
| Conread position: | 55-780 |
| Cow position: | chr5:4017768-4017057 (view UCSC Genome Browser custom track) |
| Alignm length: | 738 |
| Alignm identity: | 487 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 275 |
| Conread position: | 55-784 |
| Cow position: | chr5:16102625-16101929 (view UCSC Genome Browser custom track) |
| Alignm length: | 739 |
| Alignm identity: | 502 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 93 |
| Conread position: | 55-786 |
| Cow position: | chr5:12731269-12730559 (view UCSC Genome Browser custom track) |
| Alignm length: | 738 |
| Alignm identity: | 527 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 239 |
| Conread position: | 55-786 |
| Cow position: | chr5:23958884-23958173 (view UCSC Genome Browser custom track) |
| Alignm length: | 741 |
| Alignm identity: | 515 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 250 |
| Conread position: | 62-316 |
| Cow position: | chr5:37655356-37655608 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 191 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 110, 48 |
| Conread position: | 67-464 |
| Cow position: | chr5:41066048-41065663 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 260 |
Show alignments to all cow chromosomes.