Cow genome map
| Conread name: | Ova1-OVRM10036C05 |
| Conread position: | 2-167 |
| Cow position: | chr1:89729040-89729195 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 24, 9 |
| Conread position: | 2-175 |
| Cow position: | chr1:5023822-5023987 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 24, 13 |
| Conread position: | 2-226 |
| Cow position: | chr1:732000-732223 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 24, 12 |
| Conread position: | 2-226 |
| Cow position: | chr1:56229187-56228954 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 179 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 14, 115 |
| Conread position: | 4-155 |
| Cow position: | chr1:4293987-4293835 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 120 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 22, 10 |
| Conread position: | 4-163 |
| Cow position: | chr1:49839437-49839271 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 132 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 61, 43 |
| Conread position: | 4-165 |
| Cow position: | chr1:68951559-68951394 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 22, 10 |
| Conread position: | 4-169 |
| Cow position: | chr1:62920096-62919935 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 126 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 70, 15 |
| Conread position: | 4-190 |
| Cow position: | chr1:21835877-21835684 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 20, 10 |
| Conread position: | 4-190 |
| Cow position: | chr1:87216395-87216195 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 8, 113 |
| Conread position: | 4-214 |
| Cow position: | chr1:81868794-81869011 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 158 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 61, 113 |
| Conread position: | 4-216 |
| Cow position: | chr1:19465988-19465771 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 26, 10 |
| Conread position: | 4-224 |
| Cow position: | chr1:22448655-22448880 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 172 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 58, 114 |
| Conread position: | 4-226 |
| Cow position: | chr1:41056614-41056386 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 174 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 21, 10 |
| Conread position: | 4-226 |
| Cow position: | chr1:44125715-44125947 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 170 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 22, 10 |
| Conread position: | 4-238 |
| Cow position: | chr1:33811861-33811622 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 184 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 22, 10 |
| Conread position: | 5-181 |
| Cow position: | chr1:5135763-5135944 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 24, 10 |
| Conread position: | 5-235 |
| Cow position: | chr1:41181777-41181534 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 172 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 6-137 |
| Cow position: | chr1:62291761-62291895 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 20, 8 |
| Conread position: | 6-208 |
| Cow position: | chr1:57247364-57247157 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 68, 13 |
| Conread position: | 11-149 |
| Cow position: | chr1:52956179-52956038 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 108 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 15, 102 |
| Conread position: | 11-164 |
| Cow position: | chr1:43389124-43389285 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 127 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 15, 106 |
| Conread position: | 11-174 |
| Cow position: | chr1:51531693-51531527 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 137 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 15, 95 |
| Conread position: | 11-214 |
| Cow position: | chr1:98563088-98562874 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 51, 111 |
| Conread position: | 11-215 |
| Cow position: | chr1:15050276-15050075 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 7, 100 |
| Conread position: | 11-226 |
| Cow position: | chr1:21093018-21092794 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 16, 109 |
| Conread position: | 11-226 |
| Cow position: | chr1:47008957-47008734 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 15, 109 |
| Conread position: | 11-226 |
| Cow position: | chr1:54199456-54199678 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 15, 110 |
| Conread position: | 12-226 |
| Cow position: | chr1:77720310-77720525 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 14, 104 |
| Conread position: | 12-229 |
| Cow position: | chr1:97954534-97954749 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 152 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 18, 58 |
| Conread position: | 12-286 |
| Cow position: | chr1:48444269-48444539 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 201 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 14, 85 |
| Conread position: | 13-148 |
| Cow position: | chr1:7971345-7971210 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 13, 77 |
| Conread position: | 13-167 |
| Cow position: | chr1:26729646-26729489 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 13, 29 |
| Conread position: | 24-180 |
| Cow position: | chr1:45019896-45020055 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 41, 8 |
| Conread position: | 25-189 |
| Cow position: | chr1:51394332-51394158 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 37, 90 |
| Conread position: | 25-189 |
| Cow position: | chr1:54484980-54484807 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 35, 95 |
| Conread position: | 57-235 |
| Cow position: | chr1:72105016-72104839 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 174, 52 |
| Conread position: | 64-191 |
| Cow position: | chr1:98023529-98023658 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 101 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 22, 48 |
| Conread position: | 69-186 |
| Cow position: | chr1:38278188-38278303 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 97 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 40, 0 |
Show alignments to all cow chromosomes.