Cow genome map


           Conread name:
           Ova1-OVRM10036C05
        

               Conread position:
               1-187
               

               Cow position:
               chr21:28512521-28512330 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               146
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               27, 13
               

               Conread position:
               2-174
               

               Cow position:
               chr21:47764124-47764301 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               136
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               24, 12
               

               Conread position:
               2-225
               

               Cow position:
               chr21:44251844-44252068 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               167
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               27, 12
               

               Conread position:
               4-175
               

               Cow position:
               chr21:13365327-13365151 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               143
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               22, 10
               

               Conread position:
               4-183
               

               Cow position:
               chr21:48263112-48262933 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               127
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               22, 106
               

               Conread position:
               4-188
               

               Cow position:
               chr21:41579745-41579548 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               154
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               22, 10
               

               Conread position:
               4-216
               

               Cow position:
               chr21:3236511-3236301 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               170
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               22, 10
               

               Conread position:
               4-226
               

               Cow position:
               chr21:27229805-27230033 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               176
               

               Alignm E-value:
               8e-35
               

               Alignm gaps (pig, cow):
               22, 10
               

               Conread position:
               5-185
               

               Cow position:
               chr21:10264022-10263843 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               140
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               21, 107
               

               Conread position:
               6-248
               

               Cow position:
               chr21:32535963-32535712 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               196
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               20, 111
               

               Conread position:
               8-226
               

               Cow position:
               chr21:4399788-4399559 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               166
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               41, 113
               

               Conread position:
               11-175
               

               Cow position:
               chr21:32559376-32559544 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               134
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               15, 88
               

               Conread position:
               11-190
               

               Cow position:
               chr21:6051490-6051301 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               149
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               15, 110
               

               Conread position:
               11-221
               

               Cow position:
               chr21:47802274-47802498 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               179
               

               Alignm E-value:
               5.99756e-43
               

               Alignm gaps (pig, cow):
               15, 111
               

               Conread position:
               11-226
               

               Cow position:
               chr21:5636735-5636962 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               165
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               15, 111
               

               Conread position:
               13-207
               

               Cow position:
               chr21:911986-912190 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               152
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               13, 105
               

               Conread position:
               25-163
               

               Cow position:
               chr21:35897450-35897304 (view UCSC Genome Browser custom track)
               

               Alignm length:
               148
               

               Alignm identity:
               119
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               36, 93
               

               Conread position:
               25-226
               

               Cow position:
               chr21:38692154-38691951 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               153
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               45, 90
               

               Conread position:
               26-215
               

               Cow position:
               chr21:3585396-3585586 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               153
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               33, 70
               

               Conread position:
               56-248
               

               Cow position:
               chr21:28599699-28599504 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               140
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               45, 16
               

               Conread position:
               76-226
               

               Cow position:
               chr21:611861-612008 (view UCSC Genome Browser custom track)
               

               Alignm length:
               151
               

               Alignm identity:
               115
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               32, 0
               

               Conread position:
               76-247
               

               Cow position:
               chr21:45263114-45263286 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               131
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               152, 33
               
Show alignments to all cow chromosomes.