Cow genome map
| Conread name: | Ova1-OVRM10036C05 |
| Conread position: | 1-159 |
| Cow position: | chr9:8546421-8546585 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 61, 13 |
| Conread position: | 1-221 |
| Cow position: | chr9:20738802-20739032 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 25, 9 |
| Conread position: | 1-225 |
| Cow position: | chr9:10308908-10308674 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 25, 13 |
| Conread position: | 1-247 |
| Cow position: | chr9:38343991-38344253 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 200 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 25, 13 |
| Conread position: | 1-248 |
| Cow position: | chr9:5500958-5501206 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 190 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 25, 13 |
| Conread position: | 2-166 |
| Cow position: | chr9:32732587-32732411 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 40, 12 |
| Conread position: | 2-216 |
| Cow position: | chr9:41416453-41416674 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 173 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 24, 12 |
| Conread position: | 4-165 |
| Cow position: | chr9:51620541-51620708 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 22, 10 |
| Conread position: | 4-189 |
| Cow position: | chr9:32371657-32371463 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 22, 10 |
| Conread position: | 4-190 |
| Cow position: | chr9:18073010-18072820 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 22, 10 |
| Conread position: | 4-190 |
| Cow position: | chr9:32307133-32306942 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 58, 115 |
| Conread position: | 4-191 |
| Cow position: | chr9:9405947-9405756 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 134 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 25, 10 |
| Conread position: | 4-216 |
| Cow position: | chr9:30402317-30402096 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 22, 10 |
| Conread position: | 4-226 |
| Cow position: | chr9:28726617-28726392 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 179 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 22, 10 |
| Conread position: | 4-226 |
| Cow position: | chr9:31078979-31078749 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 180 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 22, 10 |
| Conread position: | 4-226 |
| Cow position: | chr9:31347059-31347287 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 60, 44 |
| Conread position: | 4-226 |
| Cow position: | chr9:32812448-32812680 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 22, 10 |
| Conread position: | 4-226 |
| Cow position: | chr9:63745914-63746135 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 22, 10 |
| Conread position: | 4-232 |
| Cow position: | chr9:13169558-13169333 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 69, 10 |
| Conread position: | 9-226 |
| Cow position: | chr9:9199676-9199451 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 17, 110 |
| Conread position: | 9-235 |
| Cow position: | chr9:45285422-45285187 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 24, 108 |
| Conread position: | 10-189 |
| Cow position: | chr9:22696329-22696513 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 16, 106 |
| Conread position: | 11-168 |
| Cow position: | chr9:4128674-4128507 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 15, 108 |
| Conread position: | 11-207 |
| Cow position: | chr9:8998466-8998670 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 15, 107 |
| Conread position: | 11-214 |
| Cow position: | chr9:42585516-42585304 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 15, 109 |
| Conread position: | 11-216 |
| Cow position: | chr9:44467243-44467025 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 15, 112 |
| Conread position: | 11-226 |
| Cow position: | chr9:5509831-5510058 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 178 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 15, 111 |
| Conread position: | 11-226 |
| Cow position: | chr9:22151973-22151758 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 163 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 15, 104 |
| Conread position: | 11-226 |
| Cow position: | chr9:28747413-28747191 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 53, 109 |
| Conread position: | 11-226 |
| Cow position: | chr9:64050451-64050226 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 171 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 13, 113 |
| Conread position: | 11-228 |
| Cow position: | chr9:1952159-1951934 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 15, 109 |
| Conread position: | 11-228 |
| Cow position: | chr9:29185023-29184801 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 15, 108 |
| Conread position: | 11-247 |
| Cow position: | chr9:23388568-23388326 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 181 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 21, 107 |
| Conread position: | 12-157 |
| Cow position: | chr9:23541297-23541153 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 14, 26 |
| Conread position: | 12-173 |
| Cow position: | chr9:1712366-1712207 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 14, 100 |
| Conread position: | 12-205 |
| Cow position: | chr9:57897008-57896814 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 147 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 14, 101 |
| Conread position: | 12-224 |
| Cow position: | chr9:21888277-21888501 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 14, 110 |
| Conread position: | 12-235 |
| Cow position: | chr9:53602529-53602750 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 14, 102 |
| Conread position: | 25-179 |
| Cow position: | chr9:13670757-13670924 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 39, 97 |
| Conread position: | 25-207 |
| Cow position: | chr9:54681629-54681816 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 155 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 23, 94 |
| Conread position: | 25-226 |
| Cow position: | chr9:41679870-41680067 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 40, 66 |
| Conread position: | 26-225 |
| Cow position: | chr9:7363148-7363368 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 22, 99 |
| Conread position: | 28-183 |
| Cow position: | chr9:1984390-1984231 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 46, 91 |
| Conread position: | 29-173 |
| Cow position: | chr9:44914960-44914815 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 14, 83 |
| Conread position: | 57-190 |
| Cow position: | chr9:33940773-33940905 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 57-216 |
| Cow position: | chr9:42497995-42498153 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 57-217 |
| Cow position: | chr9:9552253-9552410 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 123 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 57-226 |
| Cow position: | chr9:8636818-8636991 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 131 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 89, 52 |
| Conread position: | 64-191 |
| Cow position: | chr9:49689107-49689236 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 108 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 14, 47 |
| Conread position: | 64-226 |
| Cow position: | chr9:26065246-26065085 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 69-221 |
| Cow position: | chr9:21840253-21840403 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 40, 0 |
Show alignments to all cow chromosomes.