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Cow genome map

           
Conread name:
           
Ova1-OVRM10061A04
        

               
Conread position:
               
1-196
               

               
Cow position:
               
chr11:18067172-18066977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
83, 39
               

               
Conread position:
               
1-196
               

               
Cow position:
               
chr11:55117142-55117343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
78, 33
               

               
Conread position:
               
1-240
               

               
Cow position:
               
chr11:22103431-22103668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
154, 97
               

               
Conread position:
               
1-250
               

               
Cow position:
               
chr11:36899617-36899361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
149, 0
               

               
Conread position:
               
1-253
               

               
Cow position:
               
chr11:81614960-81614712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
204, 45
               

               
Conread position:
               
1-255
               

               
Cow position:
               
chr11:84774786-84775032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
193, 80
               

               
Conread position:
               
1-258
               

               
Cow position:
               
chr11:11991614-11991875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
1-258
               

               
Cow position:
               
chr11:26121323-26121061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
84, 143
               

               
Conread position:
               
1-258
               

               
Cow position:
               
chr11:37118153-37118420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
84, 110
               

               
Conread position:
               
1-259
               

               
Cow position:
               
chr11:11534229-11533977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
162, 12
               

               
Conread position:
               
1-260
               

               
Cow position:
               
chr11:4474807-4474543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
1-261
               

               
Cow position:
               
chr11:44511846-44511576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
1-261
               

               
Cow position:
               
chr11:53428213-53427946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
1-262
               

               
Cow position:
               
chr11:8564306-8564037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
1-262
               

               
Cow position:
               
chr11:12353275-12353006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
1-262
               

               
Cow position:
               
chr11:23883948-23884217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
1-262
               

               
Cow position:
               
chr11:52127386-52127123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
97, 112
               

               
Conread position:
               
1-262
               

               
Cow position:
               
chr11:53859954-53860231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
84, 232
               

               
Conread position:
               
1-262
               

               
Cow position:
               
chr11:71333114-71333382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
84, 118
               

               
Conread position:
               
1-266
               

               
Cow position:
               
chr11:41239603-41239333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
165, 80
               

               
Conread position:
               
1-269
               

               
Cow position:
               
chr11:35363164-35363439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 0
               

               
Conread position:
               
1-269
               

               
Cow position:
               
chr11:71846680-71846405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
1-269
               

               
Cow position:
               
chr11:84891074-84890809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
146, 44
               

               
Conread position:
               
1-271
               

               
Cow position:
               
chr11:3769618-3769347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
83, 33
               

               
Conread position:
               
1-273
               

               
Cow position:
               
chr11:49105722-49106002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
54, 170
               

               
Conread position:
               
1-275
               

               
Cow position:
               
chr11:34467278-34467533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
83, 25
               

               
Conread position:
               
1-275
               

               
Cow position:
               
chr11:53130484-53130758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 33
               

               
Conread position:
               
1-275
               

               
Cow position:
               
chr11:68571003-68570719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
84, 130
               

               
Conread position:
               
1-275
               

               
Cow position:
               
chr11:74929449-74929730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
150, 0
               

               
Conread position:
               
1-276
               

               
Cow position:
               
chr11:41599059-41598777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
1-276
               

               
Cow position:
               
chr11:73478292-73478567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
150, 80
               

               
Conread position:
               
1-277
               

               
Cow position:
               
chr11:25336740-25337025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
59, 91
               

               
Conread position:
               
1-277
               

               
Cow position:
               
chr11:31437330-31437048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
84, 188
               

               
Conread position:
               
1-280
               

               
Cow position:
               
chr11:37068635-37068364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
59, 95
               

               
Conread position:
               
1-280
               

               
Cow position:
               
chr11:67951288-67951012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
146, 27
               

               
Conread position:
               
1-282
               

               
Cow position:
               
chr11:18389192-18388914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
54, 104
               

               
Conread position:
               
1-284
               

               
Cow position:
               
chr11:7718892-7718614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
84, 132
               

               
Conread position:
               
1-284
               

               
Cow position:
               
chr11:24967134-24967410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
156, 68
               

               
Conread position:
               
1-284
               

               
Cow position:
               
chr11:36202902-36203193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
83, 134
               

               
Conread position:
               
1-284
               

               
Cow position:
               
chr11:41577336-41577059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
1-284
               

               
Cow position:
               
chr11:47586678-47586394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
58, 20
               

               
Conread position:
               
1-284
               

               
Cow position:
               
chr11:48901401-48901125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
84, 45
               

               
Conread position:
               
1-284
               

               
Cow position:
               
chr11:58973170-58972882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
84, 270
               

               
Conread position:
               
1-284
               

               
Cow position:
               
chr11:68131005-68131294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
83, 146
               

               
Conread position:
               
1-285
               

               
Cow position:
               
chr11:66943289-66943007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
82, 99
               

               
Conread position:
               
1-285
               

               
Cow position:
               
chr11:81174559-81174848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 0
               

               
Conread position:
               
1-291
               

               
Cow position:
               
chr11:17112958-17112670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 152
               

               
Conread position:
               
1-291
               

               
Cow position:
               
chr11:24459916-24459618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
1-292
               

               
Cow position:
               
chr11:62979146-62979453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
1-293
               

               
Cow position:
               
chr11:43593661-43593956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
83, 289
               

               
Conread position:
               
1-295
               

               
Cow position:
               
chr11:47165465-47165179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
167, 44
               

               
Conread position:
               
1-295
               

               
Cow position:
               
chr11:62750081-62749790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 233
               

               
Conread position:
               
1-299
               

               
Cow position:
               
chr11:19098871-19098567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
84, 17
               

               
Conread position:
               
1-299
               

               
Cow position:
               
chr11:19216274-19215973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
84, 68
               

               
Conread position:
               
1-299
               

               
Cow position:
               
chr11:32076473-32076167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
1-299
               

               
Cow position:
               
chr11:33601019-33600714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
84, 221
               

               
Conread position:
               
1-299
               

               
Cow position:
               
chr11:54178869-54178562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
1-300
               

               
Cow position:
               
chr11:4305137-4305436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
98, 89
               

               
Conread position:
               
1-300
               

               
Cow position:
               
chr11:12316418-12316108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
1-300
               

               
Cow position:
               
chr11:38641548-38641853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
84, 52
               

               
Conread position:
               
1-300
               

               
Cow position:
               
chr11:69413378-69413077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
84, 22
               

               
Conread position:
               
1-303
               

               
Cow position:
               
chr11:34412768-34413071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
79, 33
               

               
Conread position:
               
1-305
               

               
Cow position:
               
chr11:45677776-45678080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
84, 265
               

               
Conread position:
               
1-305
               

               
Cow position:
               
chr11:46474023-46473703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
1-309
               

               
Cow position:
               
chr11:31885181-31885499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
38, 16
               

               
Conread position:
               
1-311
               

               
Cow position:
               
chr11:78819776-78820080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
89, 143
               

               
Conread position:
               
1-325
               

               
Cow position:
               
chr11:17968907-17968588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 224
               

               
Conread position:
               
1-326
               

               
Cow position:
               
chr11:59156206-59155882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
57, 155
               

               
Conread position:
               
1-327
               

               
Cow position:
               
chr11:51208085-51208416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
95, 305
               

               
Conread position:
               
1-341
               

               
Cow position:
               
chr11:7334054-7333710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
47, 298
               

               
Conread position:
               
1-343
               

               
Cow position:
               
chr11:4412351-4412010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 261
               

               
Conread position:
               
1-347
               

               
Cow position:
               
chr11:16251585-16251228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 291
               

               
Conread position:
               
1-350
               

               
Cow position:
               
chr11:50197776-50197414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 295
               

               
Conread position:
               
1-356
               

               
Cow position:
               
chr11:2309541-2309899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
65, 40
               

               
Conread position:
               
1-367
               

               
Cow position:
               
chr11:8339736-8339369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 230
               

               
Conread position:
               
1-367
               

               
Cow position:
               
chr11:27386671-27386302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
85, 164
               

               
Conread position:
               
1-369
               

               
Cow position:
               
chr11:955033-955407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 141
               

               
Conread position:
               
1-374
               

               
Cow position:
               
chr11:66897131-66896754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
149, 74
               

               
Conread position:
               
1-377
               

               
Cow position:
               
chr11:439990-439616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
77, 168
               

               
Conread position:
               
1-378
               

               
Cow position:
               
chr11:24907551-24907927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
84, 15
               

               
Conread position:
               
1-379
               

               
Cow position:
               
chr11:8495706-8496081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
149, 277
               

               
Conread position:
               
1-379
               

               
Cow position:
               
chr11:15501103-15500721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
84, 314
               

               
Conread position:
               
1-379
               

               
Cow position:
               
chr11:15503770-15504161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 58
               

               
Conread position:
               
1-379
               

               
Cow position:
               
chr11:30448307-30448692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
84, 314
               

               
Conread position:
               
1-379
               

               
Cow position:
               
chr11:31138728-31138348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
84, 172
               

               
Conread position:
               
1-379
               

               
Cow position:
               
chr11:43524291-43524657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
77, 127
               

               
Conread position:
               
1-379
               

               
Cow position:
               
chr11:56145010-56145389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
95, 68
               

               
Conread position:
               
1-379
               

               
Cow position:
               
chr11:61202822-61203214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
50, 235
               

               
Conread position:
               
1-379
               

               
Cow position:
               
chr11:66733504-66733878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
84, 193
               

               
Conread position:
               
1-382
               

               
Cow position:
               
chr11:62490102-62490490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 170
               

               
Conread position:
               
1-382
               

               
Cow position:
               
chr11:65409493-65409102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
49, 302
               

               
Conread position:
               
1-383
               

               
Cow position:
               
chr11:44576070-44575692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 36
               

               
Conread position:
               
1-387
               

               
Cow position:
               
chr11:63157239-63156861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
73, 16
               

               
Conread position:
               
1-388
               

               
Cow position:
               
chr11:39115167-39115551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 18
               

               
Conread position:
               
1-389
               

               
Cow position:
               
chr11:42232281-42232663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
45, 117
               

               
Conread position:
               
1-390
               

               
Cow position:
               
chr11:4323035-4323418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 147
               

               
Conread position:
               
1-390
               

               
Cow position:
               
chr11:40467455-40467064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 278
               

               
Conread position:
               
1-390
               

               
Cow position:
               
chr11:83357064-83357454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 33
               

               
Conread position:
               
1-391
               

               
Cow position:
               
chr11:42358793-42359175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
70, 58
               

               
Conread position:
               
1-394
               

               
Cow position:
               
chr11:32749776-32750174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 292
               

               
Conread position:
               
1-395
               

               
Cow position:
               
chr11:26483390-26483776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
204, 24
               

               
Conread position:
               
1-402
               

               
Cow position:
               
chr11:82796607-82796217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
348, 116
               

               
Conread position:
               
1-403
               

               
Cow position:
               
chr11:70619723-70620117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 119
               

               
Conread position:
               
1-417
               

               
Cow position:
               
chr11:8428153-8428598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 182
               

               
Conread position:
               
1-417
               

               
Cow position:
               
chr11:31352902-31352465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 79
               

               
Conread position:
               
1-418
               

               
Cow position:
               
chr11:3833679-3833276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 147
               

               
Conread position:
               
1-418
               

               
Cow position:
               
chr11:35881575-35881998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
58, 264
               

               
Conread position:
               
1-418
               

               
Cow position:
               
chr11:42083152-42083556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
167, 73
               

               
Conread position:
               
1-418
               

               
Cow position:
               
chr11:64638854-64638438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
45, 58
               

               
Conread position:
               
1-420
               

               
Cow position:
               
chr11:35874304-35873913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
282, 33
               

               
Conread position:
               
1-420
               

               
Cow position:
               
chr11:44036384-44036809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 218
               

               
Conread position:
               
1-421
               

               
Cow position:
               
chr11:10213887-10213478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 39
               

               
Conread position:
               
1-422
               

               
Cow position:
               
chr11:80820330-80819913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 253
               

               
Conread position:
               
1-423
               

               
Cow position:
               
chr11:38638794-38639204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
167, 33
               

               
Conread position:
               
1-423
               

               
Cow position:
               
chr11:44642612-44642199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 25
               

               
Conread position:
               
1-423
               

               
Cow position:
               
chr11:63469554-63469968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
347, 56
               

               
Conread position:
               
1-423
               

               
Cow position:
               
chr11:64043918-64044326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 21
               

               
Conread position:
               
1-425
               

               
Cow position:
               
chr11:21852615-21852207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
309, 80
               

               
Conread position:
               
1-425
               

               
Cow position:
               
chr11:44637092-44636659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 138
               

               
Conread position:
               
1-425
               

               
Cow position:
               
chr11:61427283-61427687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
348, 122
               

               
Conread position:
               
1-425
               

               
Cow position:
               
chr11:64090417-64090003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 49
               

               
Conread position:
               
1-426
               

               
Cow position:
               
chr11:48271864-48272296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 62
               

               
Conread position:
               
1-426
               

               
Cow position:
               
chr11:73512751-73512348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 126
               

               
Conread position:
               
1-427
               

               
Cow position:
               
chr11:259516-259075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
45, 119
               

               
Conread position:
               
1-427
               

               
Cow position:
               
chr11:5032108-5031679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 292
               

               
Conread position:
               
1-427
               

               
Cow position:
               
chr11:11752846-11752420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
148, 45
               

               
Conread position:
               
1-427
               

               
Cow position:
               
chr11:52297551-52297124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 25
               

               
Conread position:
               
1-427
               

               
Cow position:
               
chr11:59872595-59873025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 285
               

               
Conread position:
               
1-429
               

               
Cow position:
               
chr11:18509340-18508933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
78, 113
               

               
Conread position:
               
1-429
               

               
Cow position:
               
chr11:33413902-33414334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 182
               

               
Conread position:
               
1-429
               

               
Cow position:
               
chr11:34112932-34113363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 141
               

               
Conread position:
               
1-429
               

               
Cow position:
               
chr11:49152609-49153047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
35, 150
               

               
Conread position:
               
1-429
               

               
Cow position:
               
chr11:63847520-63847942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
167, 80
               

               
Conread position:
               
1-429
               

               
Cow position:
               
chr11:76114321-76114740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 258
               

               
Conread position:
               
1-431
               

               
Cow position:
               
chr11:58588012-58588445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 246
               

               
Conread position:
               
1-435
               

               
Cow position:
               
chr11:15285949-15285511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 200
               

               
Conread position:
               
1-435
               

               
Cow position:
               
chr11:22978194-22977771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
47, 92
               

               
Conread position:
               
1-435
               

               
Cow position:
               
chr11:69118968-69119398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 226
               

               
Conread position:
               
1-439
               

               
Cow position:
               
chr11:56518641-56518203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 38
               

               
Conread position:
               
1-440
               

               
Cow position:
               
chr11:40850-41288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 107
               

               
Conread position:
               
1-441
               

               
Cow position:
               
chr11:3393541-3393100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 62
               

               
Conread position:
               
1-441
               

               
Cow position:
               
chr11:40818976-40818516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 313
               

               
Conread position:
               
1-441
               

               
Cow position:
               
chr11:76369850-76369411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
88, 25
               

               
Conread position:
               
1-443
               

               
Cow position:
               
chr11:25386739-25387181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 113
               

               
Conread position:
               
1-445
               

               
Cow position:
               
chr11:67746946-67747393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 114
               

               
Conread position:
               
1-445
               

               
Cow position:
               
chr11:84385968-84385525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
146, 53
               

               
Conread position:
               
1-447
               

               
Cow position:
               
chr11:38235906-38236367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 287
               

               
Conread position:
               
1-448
               

               
Cow position:
               
chr11:44031668-44032128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 246
               

               
Conread position:
               
1-456
               

               
Cow position:
               
chr11:54334001-54334453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 185
               

               
Conread position:
               
1-456
               

               
Cow position:
               
chr11:71168906-71168464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
84, 18
               

               
Conread position:
               
1-460
               

               
Cow position:
               
chr11:70745867-70745402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
146, 80
               

               
Conread position:
               
1-461
               

               
Cow position:
               
chr11:73924890-73924431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 223
               

               
Conread position:
               
1-462
               

               
Cow position:
               
chr11:2092016-2092458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 98
               

               
Conread position:
               
1-520
               

               
Cow position:
               
chr11:59702153-59702692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
545
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 245
               

               
Conread position:
               
1-521
               

               
Cow position:
               
chr11:27248161-27248666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
526
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 282
               

               
Conread position:
               
1-522
               

               
Cow position:
               
chr11:4435989-4436511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
541
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 178
               

               
Conread position:
               
1-522
               

               
Cow position:
               
chr11:30191832-30192357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
542
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 314
               

               
Conread position:
               
1-522
               

               
Cow position:
               
chr11:30708161-30708684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
542
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
40, 181
               

               
Conread position:
               
1-522
               

               
Cow position:
               
chr11:35579923-35580440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
532
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 45
               

               
Conread position:
               
1-522
               

               
Cow position:
               
chr11:42016967-42016460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
532
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 44
               

               
Conread position:
               
1-522
               

               
Cow position:
               
chr11:42292166-42291661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
531
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
97, 39
               

               
Conread position:
               
1-522
               

               
Cow position:
               
chr11:53778285-53778799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
532
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 30
               

               
Conread position:
               
1-522
               

               
Cow position:
               
chr11:55744142-55744648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
533
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 158
               

               
Conread position:
               
1-523
               

               
Cow position:
               
chr11:76206059-76206586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
537
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
84, 58
               

               
Conread position:
               
1-531
               

               
Cow position:
               
chr11:17890054-17889539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
541
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 80
               

               
Conread position:
               
1-531
               

               
Cow position:
               
chr11:50072646-50073142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
537
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
353, 25
               

               
Conread position:
               
1-532
               

               
Cow position:
               
chr11:1625550-1625033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
540
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 224
               

               
Conread position:
               
1-532
               

               
Cow position:
               
chr11:17321330-17321856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
547
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 74
               

               
Conread position:
               
1-532
               

               
Cow position:
               
chr11:77705433-77705940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
539
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 145
               

               
Conread position:
               
1-533
               

               
Cow position:
               
chr11:61454866-61454315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
556
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 261
               

               
Conread position:
               
1-537
               

               
Cow position:
               
chr11:58990179-58990705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
547
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 226
               

               
Conread position:
               
1-543
               

               
Cow position:
               
chr11:80788242-80787686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
561
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 296
               

               
Conread position:
               
2-282
               

               
Cow position:
               
chr11:30701390-30701676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
2-290
               

               
Cow position:
               
chr11:19238487-19238194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
82, 120
               

               
Conread position:
               
2-294
               

               
Cow position:
               
chr11:68632025-68631727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
94, 292
               

               
Conread position:
               
2-382
               

               
Cow position:
               
chr11:28692080-28691703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
55, 26
               

               
Conread position:
               
2-390
               

               
Cow position:
               
chr11:70383025-70382631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
140, 235
               

               
Conread position:
               
2-425
               

               
Cow position:
               
chr11:68207178-68206747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 97
               

               
Conread position:
               
2-441
               

               
Cow position:
               
chr11:43897805-43898248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 223
               

               
Conread position:
               
2-445
               

               
Cow position:
               
chr11:13499684-13500130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
77, 143
               

               
Conread position:
               
2-462
               

               
Cow position:
               
chr11:41812242-41811784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 119
               

               
Conread position:
               
2-514
               

               
Cow position:
               
chr11:8525433-8524947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
520
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 11
               

               
Conread position:
               
2-530
               

               
Cow position:
               
chr11:46746302-46746823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
541
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 32
               

               
Conread position:
               
2-531
               

               
Cow position:
               
chr11:17831563-17831019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
553
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
52, 30
               

               
Conread position:
               
3-205
               

               
Cow position:
               
chr11:30466951-30466740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
52, 25
               

               
Conread position:
               
3-262
               

               
Cow position:
               
chr11:10800559-10800823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
3-269
               

               
Cow position:
               
chr11:82232094-82232360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
249, 47
               

               
Conread position:
               
3-306
               

               
Cow position:
               
chr11:14361980-14361668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
3-390
               

               
Cow position:
               
chr11:33350031-33349641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 283
               

               
Conread position:
               
3-423
               

               
Cow position:
               
chr11:13061548-13061142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 31
               

               
Conread position:
               
3-433
               

               
Cow position:
               
chr11:80923665-80923221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 312
               

               
Conread position:
               
3-445
               

               
Cow position:
               
chr11:35684828-35684386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 284
               

               
Conread position:
               
3-536
               

               
Cow position:
               
chr11:50153147-50152621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
542
               

               
Alignm identity:
               
393
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 301
               

               
Conread position:
               
4-435
               

               
Cow position:
               
chr11:62151212-62150790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 166
               

               
Conread position:
               
5-262
               

               
Cow position:
               
chr11:31930365-31930622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
17, 101
               

               
Conread position:
               
6-262
               

               
Cow position:
               
chr11:33256047-33255784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
6-275
               

               
Cow position:
               
chr11:43913896-43914160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
194, 145
               

               
Conread position:
               
6-300
               

               
Cow position:
               
chr11:38843237-38843542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
6-305
               

               
Cow position:
               
chr11:46692671-46692976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
92, 172
               

               
Conread position:
               
6-433
               

               
Cow position:
               
chr11:39499050-39499459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 142
               

               
Conread position:
               
6-522
               

               
Cow position:
               
chr11:40793027-40792514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
530
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 154
               

               
Conread position:
               
6-531
               

               
Cow position:
               
chr11:46748190-46747667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
543
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
73, 13
               

               
Conread position:
               
6-547
               

               
Cow position:
               
chr11:44234031-44234586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 111
               

               
Conread position:
               
7-424
               

               
Cow position:
               
chr11:43361124-43360690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
95, 21
               

               
Conread position:
               
7-425
               

               
Cow position:
               
chr11:53552934-53553310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
342, 27
               

               
Conread position:
               
7-429
               

               
Cow position:
               
chr11:80761702-80761280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
72, 27
               

               
Conread position:
               
7-441
               

               
Cow position:
               
chr11:64334532-64334947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 217
               

               
Conread position:
               
7-518
               

               
Cow position:
               
chr11:4206973-4207486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
532
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 250
               

               
Conread position:
               
8-450
               

               
Cow position:
               
chr11:59902569-59903009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
135, 26
               

               
Conread position:
               
8-522
               

               
Cow position:
               
chr11:21894475-21893970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
522
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 26
               

               
Conread position:
               
9-265
               

               
Cow position:
               
chr11:8212452-8212715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
9-275
               

               
Cow position:
               
chr11:986621-986879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
76, 52
               

               
Conread position:
               
9-305
               

               
Cow position:
               
chr11:36929624-36929324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
42, 62
               

               
Conread position:
               
9-343
               

               
Cow position:
               
chr11:29662437-29662094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
140, 0
               

               
Conread position:
               
9-384
               

               
Cow position:
               
chr11:30120986-30120608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
75, 60
               

               
Conread position:
               
9-429
               

               
Cow position:
               
chr11:17278984-17278578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 37
               

               
Conread position:
               
9-522
               

               
Cow position:
               
chr11:31413127-31413636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
526
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
76, 288
               

               
Conread position:
               
10-382
               

               
Cow position:
               
chr11:53452665-53452298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
74, 22
               

               
Conread position:
               
12-277
               

               
Cow position:
               
chr11:65694154-65693889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
119, 21
               

               
Conread position:
               
12-423
               

               
Cow position:
               
chr11:49935064-49934638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
15, 33
               

               
Conread position:
               
12-432
               

               
Cow position:
               
chr11:36848622-36849018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
188, 69
               

               
Conread position:
               
13-236
               

               
Cow position:
               
chr11:54134564-54134342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
47, 26
               

               
Conread position:
               
13-461
               

               
Cow position:
               
chr11:66425193-66424750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 66
               

               
Conread position:
               
14-275
               

               
Cow position:
               
chr11:9837419-9837153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
32, 47
               

               
Conread position:
               
15-261
               

               
Cow position:
               
chr11:60302275-60302028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
69, 223
               

               
Conread position:
               
15-418
               

               
Cow position:
               
chr11:36986645-36987037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
70, 19
               

               
Conread position:
               
15-462
               

               
Cow position:
               
chr11:28643764-28644218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 130
               

               
Conread position:
               
15-522
               

               
Cow position:
               
chr11:52133141-52132642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
527
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
184, 66
               

               
Conread position:
               
16-305
               

               
Cow position:
               
chr11:85044519-85044812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
69, 153
               

               
Conread position:
               
16-522
               

               
Cow position:
               
chr11:951955-952465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
520
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 25
               

               
Conread position:
               
18-433
               

               
Cow position:
               
chr11:41986358-41985944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 210
               

               
Conread position:
               
19-284
               

               
Cow position:
               
chr11:16226392-16226657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
66, 155
               

               
Conread position:
               
19-424
               

               
Cow position:
               
chr11:18698560-18698973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 13
               

               
Conread position:
               
19-445
               

               
Cow position:
               
chr11:23232826-23232406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 38
               

               
Conread position:
               
20-347
               

               
Cow position:
               
chr11:62019913-62019568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
21-262
               

               
Cow position:
               
chr11:71598304-71598055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
21-439
               

               
Cow position:
               
chr11:1071405-1070983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 156
               

               
Conread position:
               
23-429
               

               
Cow position:
               
chr11:36182379-36182793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 151
               

               
Conread position:
               
26-531
               

               
Cow position:
               
chr11:67931797-67931303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
521
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
58, 20
               

               
Conread position:
               
28-289
               

               
Cow position:
               
chr11:7298687-7298427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
116, 159
               

               
Conread position:
               
28-304
               

               
Cow position:
               
chr11:25319746-25320027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 258
               

               
Conread position:
               
28-379
               

               
Cow position:
               
chr11:18588884-18588537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
51, 27
               

               
Conread position:
               
29-288
               

               
Cow position:
               
chr11:85764650-85764899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
38, 16
               

               
Conread position:
               
31-289
               

               
Cow position:
               
chr11:1485662-1485395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
52, 245
               

               
Conread position:
               
31-437
               

               
Cow position:
               
chr11:26535473-26535892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
22, 176
               

               
Conread position:
               
31-441
               

               
Cow position:
               
chr11:48496868-48496481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
297, 100
               

               
Conread position:
               
32-275
               

               
Cow position:
               
chr11:53719644-53719890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
16, 149
               

               
Conread position:
               
33-367
               

               
Cow position:
               
chr11:65430765-65431091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 48
               

               
Conread position:
               
34-276
               

               
Cow position:
               
chr11:77241082-77241318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
134, 47
               

               
Conread position:
               
34-284
               

               
Cow position:
               
chr11:6392294-6392045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
64, 99
               

               
Conread position:
               
34-443
               

               
Cow position:
               
chr11:78381343-78380953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
7, 37
               

               
Conread position:
               
36-426
               

               
Cow position:
               
chr11:80530074-80530454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
43, 111
               

               
Conread position:
               
37-394
               

               
Cow position:
               
chr11:3719956-3720317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
43, 190
               

               
Conread position:
               
38-429
               

               
Cow position:
               
chr11:18572509-18572898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 247
               

               
Conread position:
               
40-377
               

               
Cow position:
               
chr11:13190927-13191281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
39, 54
               

               
Conread position:
               
40-427
               

               
Cow position:
               
chr11:56654257-56654654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
117, 5
               

               
Conread position:
               
41-356
               

               
Cow position:
               
chr11:70459283-70459589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
38, 130
               

               
Conread position:
               
41-426
               

               
Cow position:
               
chr11:77745546-77745156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 115
               

               
Conread position:
               
43-284
               

               
Cow position:
               
chr11:58155797-58156046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
43-390
               

               
Cow position:
               
chr11:70303797-70304129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
108, 26
               

               
Conread position:
               
43-533
               

               
Cow position:
               
chr11:8988519-8988040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 163
               

               
Conread position:
               
45-266
               

               
Cow position:
               
chr11:10302476-10302252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
34, 86
               

               
Conread position:
               
45-273
               

               
Cow position:
               
chr11:57111595-57111362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
92, 102
               

               
Conread position:
               
45-284
               

               
Cow position:
               
chr11:25165158-25165397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 39
               

               
Conread position:
               
45-381
               

               
Cow position:
               
chr11:48932870-48932518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
112, 0
               

               
Conread position:
               
45-425
               

               
Cow position:
               
chr11:18484447-18484094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
39, 106
               

               
Conread position:
               
45-429
               

               
Cow position:
               
chr11:65827017-65826653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
39, 11
               

               
Conread position:
               
45-441
               

               
Cow position:
               
chr11:83230672-83230291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 38
               

               
Conread position:
               
45-510
               

               
Cow position:
               
chr11:83066208-83066659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 101
               

               
Conread position:
               
45-522
               

               
Cow position:
               
chr11:20761558-20762031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 66
               

               
Conread position:
               
45-522
               

               
Cow position:
               
chr11:74316419-74316885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 242
               

               
Conread position:
               
45-531
               

               
Cow position:
               
chr11:11125375-11125853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 235
               

               
Conread position:
               
45-533
               

               
Cow position:
               
chr11:62225712-62226198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 96
               

               
Conread position:
               
46-378
               

               
Cow position:
               
chr11:79979375-79979700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
39, 104
               

               
Conread position:
               
50-284
               

               
Cow position:
               
chr11:37347193-37347435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
33, 22
               

               
Conread position:
               
50-413
               

               
Cow position:
               
chr11:18244224-18243860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
35, 98
               

               
Conread position:
               
50-415
               

               
Cow position:
               
chr11:55761597-55761953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
118, 80
               

               
Conread position:
               
50-515
               

               
Cow position:
               
chr11:48474426-48474881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 72
               

               
Conread position:
               
51-427
               

               
Cow position:
               
chr11:73354337-73353963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
40, 238
               

               
Conread position:
               
52-288
               

               
Cow position:
               
chr11:10991999-10992240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
27, 230
               

               
Conread position:
               
52-426
               

               
Cow position:
               
chr11:62155350-62155734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
99, 29
               

               
Conread position:
               
52-521
               

               
Cow position:
               
chr11:83323296-83323755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
94, 29
               

               
Conread position:
               
53-192
               

               
Cow position:
               
chr11:63920567-63920423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
97, 54
               

               
Conread position:
               
53-267
               

               
Cow position:
               
chr11:39057359-39057567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
27, 146
               

               
Conread position:
               
53-275
               

               
Cow position:
               
chr11:30110692-30110909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
126, 28
               

               
Conread position:
               
53-276
               

               
Cow position:
               
chr11:19508017-19508243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 93
               

               
Conread position:
               
53-284
               

               
Cow position:
               
chr11:1668395-1668633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
26, 160
               

               
Conread position:
               
53-315
               

               
Cow position:
               
chr11:38193872-38194141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
35, 256
               

               
Conread position:
               
53-382
               

               
Cow position:
               
chr11:10620605-10620276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 75
               

               
Conread position:
               
53-423
               

               
Cow position:
               
chr11:46580087-46580446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
31, 79
               

               
Conread position:
               
53-433
               

               
Cow position:
               
chr11:83043640-83043261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 245
               

               
Conread position:
               
53-441
               

               
Cow position:
               
chr11:7589911-7590298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 172
               

               
Conread position:
               
53-508
               

               
Cow position:
               
chr11:43430726-43430271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 80
               

               
Conread position:
               
53-532
               

               
Cow position:
               
chr11:21844412-21843950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 28
               

               
Conread position:
               
55-431
               

               
Cow position:
               
chr11:79728951-79728568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
29, 233
               

               
Conread position:
               
56-252
               

               
Cow position:
               
chr11:79019792-79019599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
23, 77
               

               
Conread position:
               
56-372
               

               
Cow position:
               
chr11:48697171-48697486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
28, 188
               

               
Conread position:
               
56-379
               

               
Cow position:
               
chr11:32377911-32378236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
28, 229
               

               
Conread position:
               
56-426
               

               
Cow position:
               
chr11:1362757-1362372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
56-426
               

               
Cow position:
               
chr11:25332005-25331649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
92, 57
               

               
Conread position:
               
56-437
               

               
Cow position:
               
chr11:45646867-45646485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 25
               

               
Conread position:
               
56-447
               

               
Cow position:
               
chr11:51688002-51687613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
29, 225
               

               
Conread position:
               
56-522
               

               
Cow position:
               
chr11:6234155-6233699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
24, 156
               

               
Conread position:
               
56-531
               

               
Cow position:
               
chr11:33341422-33340931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 63
               

               
Conread position:
               
56-540
               

               
Cow position:
               
chr11:80564028-80564494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 131
               

               
Conread position:
               
57-192
               

               
Cow position:
               
chr11:18371715-18371581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
57-360
               

               
Cow position:
               
chr11:75355334-75355650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
22, 197
               

               
Conread position:
               
57-381
               

               
Cow position:
               
chr11:63518739-63519050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
22, 108
               

               
Conread position:
               
57-425
               

               
Cow position:
               
chr11:17083573-17083215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 90
               

               
Conread position:
               
57-536
               

               
Cow position:
               
chr11:44222624-44223074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 104
               

               
Conread position:
               
58-362
               

               
Cow position:
               
chr11:18210623-18210316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
26, 226
               

               
Conread position:
               
58-390
               

               
Cow position:
               
chr11:81300887-81300561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
21, 157
               

               
Conread position:
               
58-419
               

               
Cow position:
               
chr11:34830054-34829697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
30, 132
               

               
Conread position:
               
58-426
               

               
Cow position:
               
chr11:45632039-45631670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
26, 249
               

               
Conread position:
               
58-432
               

               
Cow position:
               
chr11:20491299-20491669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
93, 38
               

               
Conread position:
               
58-439
               

               
Cow position:
               
chr11:17227914-17227537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
22, 85
               

               
Conread position:
               
59-426
               

               
Cow position:
               
chr11:11232728-11232360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 86
               

               
Conread position:
               
62-398
               

               
Cow position:
               
chr11:45898326-45897982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
22, 46
               

               
Conread position:
               
63-275
               

               
Cow position:
               
chr11:8105513-8105727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
16, 195
               

               
Conread position:
               
63-276
               

               
Cow position:
               
chr11:59370745-59370960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
16, 108
               

               
Conread position:
               
63-390
               

               
Cow position:
               
chr11:44818827-44819153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
16, 217
               

               
Conread position:
               
63-393
               

               
Cow position:
               
chr11:24937393-24937728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 137
               

               
Conread position:
               
63-424
               

               
Cow position:
               
chr11:50778100-50778461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 231
               

               
Conread position:
               
63-427
               

               
Cow position:
               
chr11:50951281-50951651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
21, 225
               

               
Conread position:
               
63-429
               

               
Cow position:
               
chr11:9221995-9221634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
16, 160
               

               
Conread position:
               
63-429
               

               
Cow position:
               
chr11:66041004-66041376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
22, 260
               

               
Conread position:
               
63-437
               

               
Cow position:
               
chr11:21497271-21497629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
16, 90
               

               
Conread position:
               
63-445
               

               
Cow position:
               
chr11:52381140-52380758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 109
               

               
Conread position:
               
63-522
               

               
Cow position:
               
chr11:53773403-53773862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
22, 249
               

               
Conread position:
               
63-531
               

               
Cow position:
               
chr11:19247465-19247007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 123
               

               
Conread position:
               
63-533
               

               
Cow position:
               
chr11:55333639-55334108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 223
               

               
Conread position:
               
63-538
               

               
Cow position:
               
chr11:377920-377425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 248
               

               
Conread position:
               
64-255
               

               
Cow position:
               
chr11:85189652-85189455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
20, 166
               

               
Conread position:
               
64-272
               

               
Cow position:
               
chr11:10388865-10388654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
15, 110
               

               
Conread position:
               
64-276
               

               
Cow position:
               
chr11:84924364-84924147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
75, 17
               

               
Conread position:
               
64-288
               

               
Cow position:
               
chr11:41983715-41983490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
15, 84
               

               
Conread position:
               
64-327
               

               
Cow position:
               
chr11:71455519-71455788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
20, 212
               

               
Conread position:
               
64-427
               

               
Cow position:
               
chr11:8148152-8147801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
70, 17
               

               
Conread position:
               
64-427
               

               
Cow position:
               
chr11:34032464-34032102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
136, 20
               

               
Conread position:
               
64-440
               

               
Cow position:
               
chr11:55052604-55052980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
19, 176
               

               
Conread position:
               
65-275
               

               
Cow position:
               
chr11:75748168-75748380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
86, 155
               

               
Conread position:
               
65-382
               

               
Cow position:
               
chr11:30912259-30911952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
86, 163
               

               
Conread position:
               
65-410
               

               
Cow position:
               
chr11:45872584-45872232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 9
               

               
Conread position:
               
66-423
               

               
Cow position:
               
chr11:24601703-24602063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
18, 206
               

               
Conread position:
               
68-427
               

               
Cow position:
               
chr11:22499615-22499270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
69-388
               

               
Cow position:
               
chr11:33754163-33753851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
19, 79
               

               
Conread position:
               
69-429
               

               
Cow position:
               
chr11:63482689-63482333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
18, 212
               

               
Conread position:
               
69-432
               

               
Cow position:
               
chr11:27746654-27747024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 229
               

               
Conread position:
               
69-434
               

               
Cow position:
               
chr11:47544864-47545239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 239
               

               
Conread position:
               
69-436
               

               
Cow position:
               
chr11:23128803-23128435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 104
               

               
Conread position:
               
69-443
               

               
Cow position:
               
chr11:34120930-34121312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 174
               

               
Conread position:
               
69-531
               

               
Cow position:
               
chr11:27405333-27404883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 159
               

               
Conread position:
               
70-276
               

               
Cow position:
               
chr11:62045136-62045344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
13, 88
               

               
Conread position:
               
70-379
               

               
Cow position:
               
chr11:29916275-29916590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
9, 100
               

               
Conread position:
               
70-389
               

               
Cow position:
               
chr11:30764217-30764549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
9, 253
               

               
Conread position:
               
70-456
               

               
Cow position:
               
chr11:70836630-70836251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
14, 73
               

               
Conread position:
               
71-266
               

               
Cow position:
               
chr11:80824907-80825101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
53, 76
               

               
Conread position:
               
71-380
               

               
Cow position:
               
chr11:30596735-30597043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
13, 72
               

               
Conread position:
               
71-517
               

               
Cow position:
               
chr11:83397643-83398081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
13, 62
               

               
Conread position:
               
72-354
               

               
Cow position:
               
chr11:40486194-40485911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
8, 44
               

               
Conread position:
               
72-390
               

               
Cow position:
               
chr11:31525604-31525938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
6, 49
               

               
Conread position:
               
72-393
               

               
Cow position:
               
chr11:81162691-81162370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
76, 103
               

               
Conread position:
               
72-438
               

               
Cow position:
               
chr11:2917837-2917480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
275, 12
               

               
Conread position:
               
74-418
               

               
Cow position:
               
chr11:33348443-33348100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
7, 14
               

               
Conread position:
               
75-371
               

               
Cow position:
               
chr11:42793232-42792932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 202
               

               
Conread position:
               
75-425
               

               
Cow position:
               
chr11:42044244-42043902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
72, 22
               

               
Conread position:
               
76-433
               

               
Cow position:
               
chr11:16342497-16342125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 123
               

               
Conread position:
               
77-379
               

               
Cow position:
               
chr11:56728692-56728998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
74, 127
               

               
Conread position:
               
77-441
               

               
Cow position:
               
chr11:48544189-48544550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
155, 17
               

               
Conread position:
               
78-282
               

               
Cow position:
               
chr11:63516570-63516780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
78-429
               

               
Cow position:
               
chr11:77128415-77128759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
199, 64
               

               
Conread position:
               
78-445
               

               
Cow position:
               
chr11:66188575-66188203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
27, 138
               

               
Conread position:
               
80-447
               

               
Cow position:
               
chr11:36112165-36112534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
19, 217
               

               
Conread position:
               
81-284
               

               
Cow position:
               
chr11:21819695-21819490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
70, 199
               

               
Conread position:
               
81-319
               

               
Cow position:
               
chr11:63520522-63520761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
62, 95
               

               
Conread position:
               
81-379
               

               
Cow position:
               
chr11:3726035-3726337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
70, 213
               

               
Conread position:
               
81-379
               

               
Cow position:
               
chr11:81281694-81282006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
81-432
               

               
Cow position:
               
chr11:64904745-64905099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
24, 31
               

               
Conread position:
               
81-433
               

               
Cow position:
               
chr11:77319173-77319516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
197, 67
               

               
Conread position:
               
81-445
               

               
Cow position:
               
chr11:2907776-2907415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 216
               

               
Conread position:
               
81-521
               

               
Cow position:
               
chr11:18707064-18706640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
87, 98
               

               
Conread position:
               
81-522
               

               
Cow position:
               
chr11:20238422-20238855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 226
               

               
Conread position:
               
81-523
               

               
Cow position:
               
chr11:35154078-35153640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 232
               

               
Conread position:
               
82-429
               

               
Cow position:
               
chr11:4663289-4662950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
12, 76
               

               
Conread position:
               
83-382
               

               
Cow position:
               
chr11:18341285-18340989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
68, 9
               

               
Conread position:
               
83-429
               

               
Cow position:
               
chr11:2083899-2084241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
111, 68
               

               
Conread position:
               
83-531
               

               
Cow position:
               
chr11:7458534-7458092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
15, 47
               

               
Conread position:
               
84-283
               

               
Cow position:
               
chr11:62808896-62808692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
86-445
               

               
Cow position:
               
chr11:62239504-62239858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 38
               

               
Conread position:
               
87-227
               

               
Cow position:
               
chr11:26277335-26277192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
88-371
               

               
Cow position:
               
chr11:22932213-22931930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
104, 42
               

               
Conread position:
               
88-422
               

               
Cow position:
               
chr11:47899033-47899360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 196
               

               
Conread position:
               
88-462
               

               
Cow position:
               
chr11:3233837-3234206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
57, 160
               

               
Conread position:
               
88-531
               

               
Cow position:
               
chr11:15016802-15017246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 79
               

               
Conread position:
               
89-410
               

               
Cow position:
               
chr11:57725071-57724746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
61, 206
               

               
Conread position:
               
89-448
               

               
Cow position:
               
chr11:82940860-82940509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
49, 76
               

               
Conread position:
               
89-522
               

               
Cow position:
               
chr11:65157650-65157226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 51
               

               
Conread position:
               
90-429
               

               
Cow position:
               
chr11:26144326-26143998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
110, 55
               

               
Conread position:
               
92-435
               

               
Cow position:
               
chr11:36659052-36658720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
177, 77
               

               
Conread position:
               
94-429
               

               
Cow position:
               
chr11:2925529-2925203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 146
               

               
Conread position:
               
97-369
               

               
Cow position:
               
chr11:14094659-14094381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
37, 78
               

               
Conread position:
               
97-416
               

               
Cow position:
               
chr11:11469868-11469562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
60, 94
               

               
Conread position:
               
97-516
               

               
Cow position:
               
chr11:62620150-62620549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 119
               

               
Conread position:
               
103-419
               

               
Cow position:
               
chr11:77546190-77546504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
53, 133
               

               
Conread position:
               
103-509
               

               
Cow position:
               
chr11:81406386-81406001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
53, 116
               

               
Conread position:
               
105-390
               

               
Cow position:
               
chr11:19593592-19593877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
41, 118
               

               
Conread position:
               
105-390
               

               
Cow position:
               
chr11:51293636-51293348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
52, 44
               

               
Conread position:
               
106-366
               

               
Cow position:
               
chr11:18591659-18591398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
39, 33
               

               
Conread position:
               
106-427
               

               
Cow position:
               
chr11:21728493-21728184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
45, 133
               

               
Conread position:
               
106-433
               

               
Cow position:
               
chr11:29960079-29960397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 102
               

               
Conread position:
               
106-531
               

               
Cow position:
               
chr11:25620621-25620202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
22, 28
               

               
Conread position:
               
109-434
               

               
Cow position:
               
chr11:17660872-17661186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
29, 139
               

               
Conread position:
               
110-522
               

               
Cow position:
               
chr11:65762818-65762406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
174, 214
               

               
Conread position:
               
114-427
               

               
Cow position:
               
chr11:11557951-11558268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 189
               

               
Conread position:
               
117-416
               

               
Cow position:
               
chr11:52983476-52983761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
232, 30
               

               
Conread position:
               
118-393
               

               
Cow position:
               
chr11:67550578-67550315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
231, 34
               

               
Conread position:
               
118-470
               

               
Cow position:
               
chr11:70114259-70114610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
81, 64
               

               
Conread position:
               
119-426
               

               
Cow position:
               
chr11:23586422-23586734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
31, 133
               

               
Conread position:
               
120-370
               

               
Cow position:
               
chr11:2811935-2811690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
212, 31
               

               
Conread position:
               
120-391
               

               
Cow position:
               
chr11:61859111-61858842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
27, 89
               

               
Conread position:
               
120-425
               

               
Cow position:
               
chr11:65607905-65607594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
31, 163
               

               
Conread position:
               
120-432
               

               
Cow position:
               
chr11:16233142-16232833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
162, 32
               

               
Conread position:
               
120-455
               

               
Cow position:
               
chr11:5485796-5486136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
31, 209
               

               
Conread position:
               
120-522
               

               
Cow position:
               
chr11:15772934-15772534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
25, 204
               

               
Conread position:
               
121-467
               

               
Cow position:
               
chr11:36238571-36238914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
28, 18
               

               
Conread position:
               
121-513
               

               
Cow position:
               
chr11:36286488-36286876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
47, 52
               

               
Conread position:
               
122-459
               

               
Cow position:
               
chr11:61958959-61958615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
29, 176
               

               
Conread position:
               
124-450
               

               
Cow position:
               
chr11:71493068-71492743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
25, 169
               

               
Conread position:
               
124-524
               

               
Cow position:
               
chr11:72375896-72375485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
27, 159
               

               
Conread position:
               
125-457
               

               
Cow position:
               
chr11:9463622-9463961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
26, 184
               

               
Conread position:
               
127-440
               

               
Cow position:
               
chr11:27913070-27913393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
24, 112
               

               
Conread position:
               
133-270
               

               
Cow position:
               
chr11:47850828-47850969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
134-523
               

               
Cow position:
               
chr11:48649780-48650166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
19, 133
               

               
Conread position:
               
134-531
               

               
Cow position:
               
chr11:14470178-14470549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
71, 7
               

               
Conread position:
               
137-362
               

               
Cow position:
               
chr11:8936678-8936463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
20, 98
               

               
Conread position:
               
137-379
               

               
Cow position:
               
chr11:20684769-20684523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
20, 5
               

               
Conread position:
               
137-522
               

               
Cow position:
               
chr11:2874196-2874581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
22, 5
               

               
Conread position:
               
137-522
               

               
Cow position:
               
chr11:13592544-13592918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
20, 5
               

               
Conread position:
               
139-429
               

               
Cow position:
               
chr11:37804746-37804456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
12, 96
               

               
Conread position:
               
142-394
               

               
Cow position:
               
chr11:36058620-36058860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
207, 9
               

               
Conread position:
               
142-427
               

               
Cow position:
               
chr11:71501317-71501036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
58, 10
               

               
Conread position:
               
142-522
               

               
Cow position:
               
chr11:48383341-48383709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
15, 28
               

               
Conread position:
               
142-532
               

               
Cow position:
               
chr11:34646403-34646784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 83
               

               
Conread position:
               
142-534
               

               
Cow position:
               
chr11:35723791-35724161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
8, 73
               

               
Conread position:
               
144-462
               

               
Cow position:
               
chr11:40573519-40573204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
9, 135
               

               
Conread position:
               
146-515
               

               
Cow position:
               
chr11:64009535-64009898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
20, 133
               

               
Conread position:
               
146-518
               

               
Cow position:
               
chr11:66572683-66572317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
59, 9
               

               
Conread position:
               
147-433
               

               
Cow position:
               
chr11:5287-5567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
204, 12
               

               
Conread position:
               
152-398
               

               
Cow position:
               
chr11:49231700-49231941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
53, 66
               

               
Conread position:
               
152-399
               

               
Cow position:
               
chr11:60143475-60143233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
42, 26
               

               
Conread position:
               
152-422
               

               
Cow position:
               
chr11:63434232-63433968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
197, 119
               

               
Conread position:
               
152-427
               

               
Cow position:
               
chr11:9270904-9270630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
47, 149
               

               
Conread position:
               
152-428
               

               
Cow position:
               
chr11:77118535-77118796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
48, 12
               

               
Conread position:
               
152-431
               

               
Cow position:
               
chr11:30954822-30955100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 147
               

               
Conread position:
               
152-441
               

               
Cow position:
               
chr11:19592171-19591885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
41, 128
               

               
Conread position:
               
152-450
               

               
Cow position:
               
chr11:83687604-83687315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
48, 18
               

               
Conread position:
               
152-510
               

               
Cow position:
               
chr11:38670506-38670857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
45, 144
               

               
Conread position:
               
152-521
               

               
Cow position:
               
chr11:26845757-26845391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
141, 18
               

               
Conread position:
               
153-522
               

               
Cow position:
               
chr11:69075733-69076112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 159
               

               
Conread position:
               
155-423
               

               
Cow position:
               
chr11:67600609-67600877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
146, 122
               

               
Conread position:
               
155-429
               

               
Cow position:
               
chr11:30830789-30830516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 146
               

               
Conread position:
               
155-429
               

               
Cow position:
               
chr11:71008962-71009222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
39, 102
               

               
Conread position:
               
155-444
               

               
Cow position:
               
chr11:8545186-8544905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
45, 60
               

               
Conread position:
               
156-423
               

               
Cow position:
               
chr11:41176122-41175856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
193, 138
               

               
Conread position:
               
156-423
               

               
Cow position:
               
chr11:55494505-55494772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 92
               

               
Conread position:
               
157-429
               

               
Cow position:
               
chr11:30209992-30209725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
131, 34
               

               
Conread position:
               
157-523
               

               
Cow position:
               
chr11:16907214-16906851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
109, 43
               

               
Conread position:
               
158-406
               

               
Cow position:
               
chr11:85986341-85986097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
189, 128
               

               
Conread position:
               
158-429
               

               
Cow position:
               
chr11:70086154-70086430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
37, 224
               

               
Conread position:
               
159-427
               

               
Cow position:
               
chr11:75874921-75874657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
142, 91
               

               
Conread position:
               
161-442
               

               
Cow position:
               
chr11:80556053-80556331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
117, 141
               

               
Conread position:
               
164-443
               

               
Cow position:
               
chr11:48295868-48296142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 56
               

               
Conread position:
               
164-518
               

               
Cow position:
               
chr11:81135326-81134994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
185, 15
               

               
Conread position:
               
165-440
               

               
Cow position:
               
chr11:51729125-51729395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
182, 71
               

               
Conread position:
               
165-517
               

               
Cow position:
               
chr11:6245158-6245495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
32, 123
               

               
Conread position:
               
166-394
               

               
Cow position:
               
chr11:80756946-80756717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
34, 125
               

               
Conread position:
               
166-425
               

               
Cow position:
               
chr11:40479017-40478758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
25, 118
               

               
Conread position:
               
166-429
               

               
Cow position:
               
chr11:17493316-17493580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
110, 79
               

               
Conread position:
               
166-438
               

               
Cow position:
               
chr11:42296780-42296513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
183, 119
               

               
Conread position:
               
170-427
               

               
Cow position:
               
chr11:71390722-71390469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
130, 109
               

               
Conread position:
               
170-432
               

               
Cow position:
               
chr11:35775180-35775439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
33, 24
               

               
Conread position:
               
170-435
               

               
Cow position:
               
chr11:2576062-2575800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
105, 92
               

               
Conread position:
               
170-518
               

               
Cow position:
               
chr11:11646911-11647272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 132
               

               
Conread position:
               
170-532
               

               
Cow position:
               
chr11:6202288-6202645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
173, 107
               

               
Conread position:
               
171-423
               

               
Cow position:
               
chr11:28993889-28993647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
178, 107
               

               
Conread position:
               
171-532
               

               
Cow position:
               
chr11:45434929-45435276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
161, 69
               

               
Conread position:
               
173-282
               

               
Cow position:
               
chr11:70741131-70741023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
173-437
               

               
Cow position:
               
chr11:35213316-35213062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
118, 24
               

               
Conread position:
               
173-441
               

               
Cow position:
               
chr11:56187464-56187719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
99, 63
               

               
Conread position:
               
173-526
               

               
Cow position:
               
chr11:63435362-63435705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
118, 247
               

               
Conread position:
               
173-565
               

               
Cow position:
               
chr11:5201805-5201421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 110
               

               
Conread position:
               
176-522
               

               
Cow position:
               
chr11:32254371-32254037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
24, 49
               

               
Conread position:
               
176-530
               

               
Cow position:
               
chr11:18851766-18852090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
173, 88
               

               
Conread position:
               
179-426
               

               
Cow position:
               
chr11:86720561-86720322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
168, 47
               

               
Conread position:
               
180-443
               

               
Cow position:
               
chr11:23407313-23407576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
169, 243
               

               
Conread position:
               
184-522
               

               
Cow position:
               
chr11:63999234-63998911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
20, 26
               

               
Conread position:
               
189-425
               

               
Cow position:
               
chr11:69977838-69978065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
160, 44
               

               
Conread position:
               
189-441
               

               
Cow position:
               
chr11:67615382-67615137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
95, 30
               

               
Conread position:
               
189-513
               

               
Cow position:
               
chr11:47772531-47772212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
116, 34
               

               
Conread position:
               
190-429
               

               
Cow position:
               
chr11:52690661-52690424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
9, 91
               

               
Conread position:
               
194-522
               

               
Cow position:
               
chr11:62788994-62789306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
28, 36
               

               
Conread position:
               
195-517
               

               
Cow position:
               
chr11:61525935-61526253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
96, 59
               

               
Conread position:
               
196-432
               

               
Cow position:
               
chr11:65767065-65767301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
87, 105
               

               
Conread position:
               
198-425
               

               
Cow position:
               
chr11:67615059-67614827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
75, 107
               

               
Conread position:
               
199-529
               

               
Cow position:
               
chr11:41293948-41293618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
33, 89
               

               
Conread position:
               
203-427
               

               
Cow position:
               
chr11:6194080-6194302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
149, 63
               

               
Conread position:
               
203-434
               

               
Cow position:
               
chr11:375329-375562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
59, 90
               

               
Conread position:
               
204-418
               

               
Cow position:
               
chr11:80537362-80537574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
80, 18
               

               
Conread position:
               
204-521
               

               
Cow position:
               
chr11:40608721-40608415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
67, 92
               

               
Conread position:
               
204-522
               

               
Cow position:
               
chr11:49873012-49872708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
20, 12
               

               
Conread position:
               
205-417
               

               
Cow position:
               
chr11:84490613-84490412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
206, 81
               

               
Conread position:
               
207-427
               

               
Cow position:
               
chr11:31506723-31506947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
53, 80
               

               
Conread position:
               
207-433
               

               
Cow position:
               
chr11:63920170-63919952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
143, 56
               

               
Conread position:
               
208-526
               

               
Cow position:
               
chr11:26275078-26274783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
13, 72
               

               
Conread position:
               
210-422
               

               
Cow position:
               
chr11:83032565-83032772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
65, 19
               

               
Conread position:
               
210-522
               

               
Cow position:
               
chr11:261381-261078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 61
               

               
Conread position:
               
220-439
               

               
Cow position:
               
chr11:17036638-17036418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
58, 81
               

               
Conread position:
               
222-381
               

               
Cow position:
               
chr11:11045140-11044982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
61, 76
               

               
Conread position:
               
223-399
               

               
Cow position:
               
chr11:69392452-69392631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
26, 90
               

               
Conread position:
               
223-399
               

               
Cow position:
               
chr11:75965755-75965583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
124, 56
               

               
Conread position:
               
223-443
               

               
Cow position:
               
chr11:30493893-30494105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
224-441
               

               
Cow position:
               
chr11:31227864-31228072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
126, 26
               

               
Conread position:
               
229-429
               

               
Cow position:
               
chr11:32691063-32690873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
120, 13
               

               
Conread position:
               
229-445
               

               
Cow position:
               
chr11:39060700-39060489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
17, 47
               

               
Conread position:
               
229-517
               

               
Cow position:
               
chr11:6633606-6633900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
73, 175
               

               
Conread position:
               
229-522
               

               
Cow position:
               
chr11:29308475-29308761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
52, 177
               

               
Conread position:
               
230-441
               

               
Cow position:
               
chr11:42160159-42159946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
61, 120
               

               
Conread position:
               
233-424
               

               
Cow position:
               
chr11:64406130-64406322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
68, 48
               

               
Conread position:
               
233-432
               

               
Cow position:
               
chr11:48085820-48086021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
45, 67
               

               
Conread position:
               
233-433
               

               
Cow position:
               
chr11:62813045-62812848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
44, 13
               

               
Conread position:
               
233-443
               

               
Cow position:
               
chr11:17676466-17676261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
43, 54
               

               
Conread position:
               
236-427
               

               
Cow position:
               
chr11:24599482-24599292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
65, 33
               

               
Conread position:
               
236-534
               

               
Cow position:
               
chr11:8437782-8437501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
113, 43
               

               
Conread position:
               
238-446
               

               
Cow position:
               
chr11:35803043-35803251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
53, 63
               

               
Conread position:
               
238-522
               

               
Cow position:
               
chr11:42182950-42183218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
14, 76
               

               
Conread position:
               
240-433
               

               
Cow position:
               
chr11:72884675-72884495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
240-529
               

               
Cow position:
               
chr11:32398548-32398827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
30, 60
               

               
Conread position:
               
242-420
               

               
Cow position:
               
chr11:33409347-33409172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
107, 34
               

               
Conread position:
               
243-467
               

               
Cow position:
               
chr11:47724817-47725033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
215, 53
               

               
Conread position:
               
244-533
               

               
Cow position:
               
chr11:22747414-22747120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
32, 56
               

               
Conread position:
               
245-425
               

               
Cow position:
               
chr11:53279798-53279620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
31, 51
               

               
Conread position:
               
246-388
               

               
Cow position:
               
chr11:54218634-54218772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
103, 35
               

               
Conread position:
               
246-531
               

               
Cow position:
               
chr11:46922981-46922699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
27, 188
               

               
Conread position:
               
247-523
               

               
Cow position:
               
chr11:72292461-72292741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
25, 52
               

               
Conread position:
               
248-454
               

               
Cow position:
               
chr11:28168505-28168300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
57, 38
               

               
Conread position:
               
248-523
               

               
Cow position:
               
chr11:17721885-17721621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
31, 53
               

               
Conread position:
               
249-443
               

               
Cow position:
               
chr11:31410963-31410766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
42, 178
               

               
Conread position:
               
254-429
               

               
Cow position:
               
chr11:30867106-30867281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
47, 25
               

               
Conread position:
               
254-433
               

               
Cow position:
               
chr11:4637248-4637071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
24, 47
               

               
Conread position:
               
259-460
               

               
Cow position:
               
chr11:10363458-10363256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
46, 34
               

               
Conread position:
               
259-531
               

               
Cow position:
               
chr11:48248286-48248012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
90, 41
               

               
Conread position:
               
262-531
               

               
Cow position:
               
chr11:29699768-29699500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
29, 39
               

               
Conread position:
               
288-433
               

               
Cow position:
               
chr11:897628-897776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
289-427
               

               
Cow position:
               
chr11:36329075-36328940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
60, 11
               

               
Conread position:
               
299-450
               

               
Cow position:
               
chr11:71021969-71022121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
50, 9
               

               
Conread position:
               
300-508
               

               
Cow position:
               
chr11:65803902-65803681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
300-523
               

               
Cow position:
               
chr11:49255373-49255590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
50, 80
               

               
Conread position:
               
300-542
               

               
Cow position:
               
chr11:15382534-15382294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
48, 114
               

               
Conread position:
               
309-461
               

               
Cow position:
               
chr11:79019081-79018929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
40, 114
               

               
Conread position:
               
309-530
               

               
Cow position:
               
chr11:79466189-79466409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
40, 157
               

               
Conread position:
               
311-441
               

               
Cow position:
               
chr11:63165667-63165537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
38, 113
               

               
Conread position:
               
312-514
               

               
Cow position:
               
chr11:30895023-30894832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
37, 112
               

               
Conread position:
               
312-518
               

               
Cow position:
               
chr11:82731017-82730809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
37, 111
               

               
Conread position:
               
312-522
               

               
Cow position:
               
chr11:17638554-17638339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
38, 91
               

               
Conread position:
               
313-466
               

               
Cow position:
               
chr11:20205870-20205716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
36, 110
               

               
Conread position:
               
320-512
               

               
Cow position:
               
chr11:70741131-70741325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
29, 87
               

               
Conread position:
               
320-522
               

               
Cow position:
               
chr11:2639668-2639465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
31, 81
               

               
Conread position:
               
320-531
               

               
Cow position:
               
chr11:62749480-62749262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
72, 29
               

               
Conread position:
               
321-531
               

               
Cow position:
               
chr11:17195841-17195628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
27, 81
               

               
Conread position:
               
322-531
               

               
Cow position:
               
chr11:32782893-32782686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
28, 102
               

               
Conread position:
               
323-521
               

               
Cow position:
               
chr11:52415427-52415627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
99, 26
               

               
Conread position:
               
330-522
               

               
Cow position:
               
chr11:77208073-77208266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
20, 59
               

               
Conread position:
               
330-522
               

               
Cow position:
               
chr11:80008069-80007883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
19, 72
               

               
Conread position:
               
330-530
               

               
Cow position:
               
chr11:4436746-4436948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
20, 94
               

               
Conread position:
               
333-514
               

               
Cow position:
               
chr11:31326008-31326191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
16, 90
               

               
Conread position:
               
333-532
               

               
Cow position:
               
chr11:47314430-47314232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
186, 56
               

               
Conread position:
               
336-457
               

               
Cow position:
               
chr11:55714448-55714568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
13, 8
               

               
Conread position:
               
337-522
               

               
Cow position:
               
chr11:434870-434681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
7, 67
               

               
Conread position:
               
339-515
               

               
Cow position:
               
chr11:49486786-49486961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
10, 62
               

               
Conread position:
               
339-516
               

               
Cow position:
               
chr11:59916154-59916342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
340-522
               

               
Cow position:
               
chr11:41980196-41980025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
10, 83
               

               
Conread position:
               
342-533
               

               
Cow position:
               
chr11:30485662-30485847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
7, 82
               

               
Conread position:
               
345-522
               

               
Cow position:
               
chr11:3283038-3283220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
350-523
               

               
Cow position:
               
chr11:80596357-80596535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
84, 73
               

               
Conread position:
               
352-512
               

               
Cow position:
               
chr11:688837-688681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
353-535
               

               
Cow position:
               
chr11:11483334-11483512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
357-522
               

               
Cow position:
               
chr11:25614787-25614624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
52, 43
               

               
Conread position:
               
379-571
               

               
Cow position:
               
chr11:77468384-77468186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
53, 175
               

               
Conread position:
               
430-533
               

               
Cow position:
               
chr11:40572967-40572862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
106
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
38, 0
               
Show alignments to all cow chromosomes.