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Cow genome map

           
Conread name:
           
Ova1-OVRM10061A04
        

               
Conread position:
               
1-196
               

               
Cow position:
               
chr6:1174774-1174574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
127, 56
               

               
Conread position:
               
1-196
               

               
Cow position:
               
chr6:25358804-25359000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
146, 80
               

               
Conread position:
               
1-202
               

               
Cow position:
               
chr6:26837657-26837454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
146, 9
               

               
Conread position:
               
1-211
               

               
Cow position:
               
chr6:25784040-25784252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
79, 94
               

               
Conread position:
               
1-242
               

               
Cow position:
               
chr6:21534786-21535027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
83, 152
               

               
Conread position:
               
1-246
               

               
Cow position:
               
chr6:46666833-46667087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
39, 67
               

               
Conread position:
               
1-250
               

               
Cow position:
               
chr6:51296491-51296235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
84, 16
               

               
Conread position:
               
1-251
               

               
Cow position:
               
chr6:55903960-55904218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
84, 233
               

               
Conread position:
               
1-258
               

               
Cow position:
               
chr6:47383728-47383994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
1-260
               

               
Cow position:
               
chr6:54218399-54218665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
103, 111
               

               
Conread position:
               
1-262
               

               
Cow position:
               
chr6:875598-875328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
1-262
               

               
Cow position:
               
chr6:1538531-1538791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
146, 45
               

               
Conread position:
               
1-262
               

               
Cow position:
               
chr6:2833148-2832883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
1-262
               

               
Cow position:
               
chr6:8206064-8206332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
84, 133
               

               
Conread position:
               
1-262
               

               
Cow position:
               
chr6:11721051-11720782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
1-262
               

               
Cow position:
               
chr6:12389826-12390090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
84, 68
               

               
Conread position:
               
1-262
               

               
Cow position:
               
chr6:22507473-22507732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
97, 152
               

               
Conread position:
               
1-262
               

               
Cow position:
               
chr6:28111961-28111696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
149, 86
               

               
Conread position:
               
1-262
               

               
Cow position:
               
chr6:28172947-28173215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
163, 0
               

               
Conread position:
               
1-262
               

               
Cow position:
               
chr6:36532151-36532420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
1-262
               

               
Cow position:
               
chr6:41193227-41193493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
84, 104
               

               
Conread position:
               
1-262
               

               
Cow position:
               
chr6:41232338-41232605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
149, 125
               

               
Conread position:
               
1-262
               

               
Cow position:
               
chr6:43188620-43188888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
146, 0
               

               
Conread position:
               
1-262
               

               
Cow position:
               
chr6:58031850-58032116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
84, 33
               

               
Conread position:
               
1-262
               

               
Cow position:
               
chr6:60877172-60877441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chr6:13741425-13741696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
83, 27
               

               
Conread position:
               
1-267
               

               
Cow position:
               
chr6:10605411-10605684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
39, 217
               

               
Conread position:
               
1-274
               

               
Cow position:
               
chr6:2012746-2013022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
1-274
               

               
Cow position:
               
chr6:32210902-32210625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 144
               

               
Conread position:
               
1-274
               

               
Cow position:
               
chr6:61575331-61575612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
83, 98
               

               
Conread position:
               
1-275
               

               
Cow position:
               
chr6:22877427-22877154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
82, 55
               

               
Conread position:
               
1-277
               

               
Cow position:
               
chr6:2185625-2185345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
93, 111
               

               
Conread position:
               
1-277
               

               
Cow position:
               
chr6:3936274-3936556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
131, 33
               

               
Conread position:
               
1-278
               

               
Cow position:
               
chr6:54980829-54981118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
1-280
               

               
Cow position:
               
chr6:7312319-7312604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
59, 27
               

               
Conread position:
               
1-280
               

               
Cow position:
               
chr6:54647796-54647511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
36, 144
               

               
Conread position:
               
1-281
               

               
Cow position:
               
chr6:28476905-28477190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
47, 155
               

               
Conread position:
               
1-282
               

               
Cow position:
               
chr6:55538396-55538113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
44, 48
               

               
Conread position:
               
1-283
               

               
Cow position:
               
chr6:6181849-6181562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
84, 271
               

               
Conread position:
               
1-284
               

               
Cow position:
               
chr6:606989-607273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
83, 227
               

               
Conread position:
               
1-284
               

               
Cow position:
               
chr6:1817138-1816849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
146, 210
               

               
Conread position:
               
1-284
               

               
Cow position:
               
chr6:11869060-11868769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
78, 234
               

               
Conread position:
               
1-284
               

               
Cow position:
               
chr6:20552376-20552084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
1-284
               

               
Cow position:
               
chr6:40450497-40450777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
84, 95
               

               
Conread position:
               
1-284
               

               
Cow position:
               
chr6:49706871-49706593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
84, 145
               

               
Conread position:
               
1-288
               

               
Cow position:
               
chr6:642850-642545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
81, 273
               

               
Conread position:
               
1-293
               

               
Cow position:
               
chr6:16410923-16411212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
199, 151
               

               
Conread position:
               
1-295
               

               
Cow position:
               
chr6:62479438-62479141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
167, 270
               

               
Conread position:
               
1-299
               

               
Cow position:
               
chr6:13603194-13603494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
84, 142
               

               
Conread position:
               
1-299
               

               
Cow position:
               
chr6:15137293-15136991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
1-299
               

               
Cow position:
               
chr6:34842832-34842527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
1-299
               

               
Cow position:
               
chr6:48872479-48872180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
84, 21
               

               
Conread position:
               
1-300
               

               
Cow position:
               
chr6:28343378-28343675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
84, 62
               

               
Conread position:
               
1-304
               

               
Cow position:
               
chr6:66566183-66566491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
146, 270
               

               
Conread position:
               
1-305
               

               
Cow position:
               
chr6:706871-707183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
1-327
               

               
Cow position:
               
chr6:60931176-60930845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
13, 228
               

               
Conread position:
               
1-358
               

               
Cow position:
               
chr6:44098815-44099171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
150, 46
               

               
Conread position:
               
1-369
               

               
Cow position:
               
chr6:1944457-1944809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 84
               

               
Conread position:
               
1-370
               

               
Cow position:
               
chr6:62925266-62924899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
78, 58
               

               
Conread position:
               
1-379
               

               
Cow position:
               
chr6:8562443-8562826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
78, 301
               

               
Conread position:
               
1-379
               

               
Cow position:
               
chr6:33460815-33461195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
91, 151
               

               
Conread position:
               
1-379
               

               
Cow position:
               
chr6:40814239-40814623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
84, 315
               

               
Conread position:
               
1-379
               

               
Cow position:
               
chr6:48567615-48567246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
77, 156
               

               
Conread position:
               
1-379
               

               
Cow position:
               
chr6:51718432-51718815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
84, 289
               

               
Conread position:
               
1-379
               

               
Cow position:
               
chr6:53178367-53178735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
150, 80
               

               
Conread position:
               
1-379
               

               
Cow position:
               
chr6:63272890-63272505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
45, 239
               

               
Conread position:
               
1-379
               

               
Cow position:
               
chr6:64721023-64721397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
156, 131
               

               
Conread position:
               
1-381
               

               
Cow position:
               
chr6:12337712-12338101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 320
               

               
Conread position:
               
1-384
               

               
Cow position:
               
chr6:47678-47300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
146, 60
               

               
Conread position:
               
1-390
               

               
Cow position:
               
chr6:1770468-1770081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 113
               

               
Conread position:
               
1-390
               

               
Cow position:
               
chr6:10332379-10331984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
54, 198
               

               
Conread position:
               
1-390
               

               
Cow position:
               
chr6:58073770-58074165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
47, 257
               

               
Conread position:
               
1-393
               

               
Cow position:
               
chr6:16699989-16700381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
76, 33
               

               
Conread position:
               
1-393
               

               
Cow position:
               
chr6:29210229-29210615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 67
               

               
Conread position:
               
1-397
               

               
Cow position:
               
chr6:31635960-31635560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 73
               

               
Conread position:
               
1-399
               

               
Cow position:
               
chr6:54369169-54368778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 33
               

               
Conread position:
               
1-409
               

               
Cow position:
               
chr6:56842887-56843290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
304, 154
               

               
Conread position:
               
1-417
               

               
Cow position:
               
chr6:31525779-31526190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
167, 44
               

               
Conread position:
               
1-418
               

               
Cow position:
               
chr6:36470838-36470417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 40
               

               
Conread position:
               
1-421
               

               
Cow position:
               
chr6:37634517-37634943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 71
               

               
Conread position:
               
1-421
               

               
Cow position:
               
chr6:66532075-66531674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
45, 81
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr6:611294-611697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
84, 44
               

               
Conread position:
               
1-426
               

               
Cow position:
               
chr6:6067961-6067548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
53, 38
               

               
Conread position:
               
1-426
               

               
Cow position:
               
chr6:19681789-19681372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 48
               

               
Conread position:
               
1-426
               

               
Cow position:
               
chr6:38218391-38218819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 199
               

               
Conread position:
               
1-427
               

               
Cow position:
               
chr6:9008880-9008458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 42
               

               
Conread position:
               
1-427
               

               
Cow position:
               
chr6:63197440-63197009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
82, 9
               

               
Conread position:
               
1-428
               

               
Cow position:
               
chr6:18049298-18048868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
202, 151
               

               
Conread position:
               
1-429
               

               
Cow position:
               
chr6:1886920-1886511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
78, 48
               

               
Conread position:
               
1-429
               

               
Cow position:
               
chr6:35181525-35181102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 20
               

               
Conread position:
               
1-429
               

               
Cow position:
               
chr6:35990501-35990079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 52
               

               
Conread position:
               
1-429
               

               
Cow position:
               
chr6:40031921-40032345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 90
               

               
Conread position:
               
1-429
               

               
Cow position:
               
chr6:42565413-42565842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 106
               

               
Conread position:
               
1-429
               

               
Cow position:
               
chr6:46465555-46465976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 166
               

               
Conread position:
               
1-429
               

               
Cow position:
               
chr6:49398889-49398464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 290
               

               
Conread position:
               
1-429
               

               
Cow position:
               
chr6:54867239-54867672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 36
               

               
Conread position:
               
1-429
               

               
Cow position:
               
chr6:63047303-63047747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 438
               

               
Conread position:
               
1-431
               

               
Cow position:
               
chr6:46570848-46571263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 22
               

               
Conread position:
               
1-432
               

               
Cow position:
               
chr6:8318438-8318008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
83, 33
               

               
Conread position:
               
1-432
               

               
Cow position:
               
chr6:19427177-19427609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
83, 49
               

               
Conread position:
               
1-432
               

               
Cow position:
               
chr6:36652157-36652580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
155, 9
               

               
Conread position:
               
1-432
               

               
Cow position:
               
chr6:55474977-55475414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
89, 68
               

               
Conread position:
               
1-434
               

               
Cow position:
               
chr6:11169435-11169863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
133, 80
               

               
Conread position:
               
1-435
               

               
Cow position:
               
chr6:64431669-64432099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 33
               

               
Conread position:
               
1-437
               

               
Cow position:
               
chr6:28482742-28483181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
83, 290
               

               
Conread position:
               
1-439
               

               
Cow position:
               
chr6:8637002-8637447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 158
               

               
Conread position:
               
1-442
               

               
Cow position:
               
chr6:65870751-65871204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 387
               

               
Conread position:
               
1-443
               

               
Cow position:
               
chr6:6060830-6060402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 168
               

               
Conread position:
               
1-443
               

               
Cow position:
               
chr6:10176571-10176133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
167, 33
               

               
Conread position:
               
1-443
               

               
Cow position:
               
chr6:17414726-17414276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 138
               

               
Conread position:
               
1-443
               

               
Cow position:
               
chr6:23695725-23696169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
271, 161
               

               
Conread position:
               
1-446
               

               
Cow position:
               
chr6:61631886-61631436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 33
               

               
Conread position:
               
1-447
               

               
Cow position:
               
chr6:25407679-25407219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
49, 297
               

               
Conread position:
               
1-448
               

               
Cow position:
               
chr6:42961640-42961190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
78, 246
               

               
Conread position:
               
1-449
               

               
Cow position:
               
chr6:35842388-35842832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 68
               

               
Conread position:
               
1-462
               

               
Cow position:
               
chr6:8209858-8209418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 33
               

               
Conread position:
               
1-521
               

               
Cow position:
               
chr6:10106273-10105749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
547
               

               
Alignm identity:
               
395
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 192
               

               
Conread position:
               
1-522
               

               
Cow position:
               
chr6:323583-323067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
536
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
84, 240
               

               
Conread position:
               
1-522
               

               
Cow position:
               
chr6:7131144-7130626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
538
               

               
Alignm identity:
               
386
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 152
               

               
Conread position:
               
1-522
               

               
Cow position:
               
chr6:15938137-15937617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
540
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
45, 121
               

               
Conread position:
               
1-522
               

               
Cow position:
               
chr6:55040490-55039951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
546
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
81, 271
               

               
Conread position:
               
1-524
               

               
Cow position:
               
chr6:5302672-5302165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
531
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 32
               

               
Conread position:
               
1-526
               

               
Cow position:
               
chr6:24781836-24781312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
539
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 290
               

               
Conread position:
               
1-529
               

               
Cow position:
               
chr6:13688084-13687575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
533
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 177
               

               
Conread position:
               
1-529
               

               
Cow position:
               
chr6:15305316-15305811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
531
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 33
               

               
Conread position:
               
1-529
               

               
Cow position:
               
chr6:18447781-18447273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
536
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 168
               

               
Conread position:
               
1-529
               

               
Cow position:
               
chr6:47519778-47520296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
538
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 75
               

               
Conread position:
               
1-530
               

               
Cow position:
               
chr6:36195941-36196445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
534
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 235
               

               
Conread position:
               
1-530
               

               
Cow position:
               
chr6:54140545-54141063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
546
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
193, 54
               

               
Conread position:
               
1-531
               

               
Cow position:
               
chr6:60057938-60057394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
556
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
58, 70
               

               
Conread position:
               
1-532
               

               
Cow position:
               
chr6:61269062-61269562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
535
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 33
               

               
Conread position:
               
1-533
               

               
Cow position:
               
chr6:9751318-9750790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
548
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
73, 152
               

               
Conread position:
               
1-533
               

               
Cow position:
               
chr6:54365596-54365083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
541
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 81
               

               
Conread position:
               
2-192
               

               
Cow position:
               
chr6:37331695-37331882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
11, 28
               

               
Conread position:
               
2-272
               

               
Cow position:
               
chr6:40264468-40264199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
82, 5
               

               
Conread position:
               
2-284
               

               
Cow position:
               
chr6:1273629-1273344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
82, 176
               

               
Conread position:
               
2-300
               

               
Cow position:
               
chr6:10598854-10599145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
82, 66
               

               
Conread position:
               
2-379
               

               
Cow position:
               
chr6:48281723-48282098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 241
               

               
Conread position:
               
2-417
               

               
Cow position:
               
chr6:4864810-4864403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 78
               

               
Conread position:
               
2-417
               

               
Cow position:
               
chr6:51674638-51675051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
57, 159
               

               
Conread position:
               
2-425
               

               
Cow position:
               
chr6:26728798-26728381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 243
               

               
Conread position:
               
2-429
               

               
Cow position:
               
chr6:5095826-5095387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 155
               

               
Conread position:
               
2-429
               

               
Cow position:
               
chr6:13367028-13367441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
82, 43
               

               
Conread position:
               
2-451
               

               
Cow position:
               
chr6:14958615-14958164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 24
               

               
Conread position:
               
3-196
               

               
Cow position:
               
chr6:51071433-51071637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
42, 136
               

               
Conread position:
               
3-418
               

               
Cow position:
               
chr6:32121640-32122053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 246
               

               
Conread position:
               
3-429
               

               
Cow position:
               
chr6:12550997-12551427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 121
               

               
Conread position:
               
3-532
               

               
Cow position:
               
chr6:11192723-11192235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
534
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 144
               

               
Conread position:
               
6-295
               

               
Cow position:
               
chr6:47540258-47540555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 226
               

               
Conread position:
               
6-305
               

               
Cow position:
               
chr6:23117667-23117362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
78, 179
               

               
Conread position:
               
6-326
               

               
Cow position:
               
chr6:58172920-58173237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
78, 28
               

               
Conread position:
               
6-376
               

               
Cow position:
               
chr6:6769009-6769383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
78, 98
               

               
Conread position:
               
6-383
               

               
Cow position:
               
chr6:57164159-57164539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
38, 78
               

               
Conread position:
               
6-418
               

               
Cow position:
               
chr6:34196416-34196004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
79, 103
               

               
Conread position:
               
6-429
               

               
Cow position:
               
chr6:67214474-67214905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 130
               

               
Conread position:
               
6-451
               

               
Cow position:
               
chr6:35471794-35471333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 374
               

               
Conread position:
               
6-531
               

               
Cow position:
               
chr6:66363512-66362988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
541
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
74, 179
               

               
Conread position:
               
6-533
               

               
Cow position:
               
chr6:2546975-2547506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
546
               

               
Alignm identity:
               
387
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 85
               

               
Conread position:
               
7-269
               

               
Cow position:
               
chr6:5958283-5958028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
140, 81
               

               
Conread position:
               
7-356
               

               
Cow position:
               
chr6:49410951-49410614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
43, 78
               

               
Conread position:
               
7-372
               

               
Cow position:
               
chr6:44372210-44371845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
72, 223
               

               
Conread position:
               
7-378
               

               
Cow position:
               
chr6:52248404-52248025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
46, 88
               

               
Conread position:
               
7-414
               

               
Cow position:
               
chr6:51835133-51835539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 161
               

               
Conread position:
               
7-423
               

               
Cow position:
               
chr6:24031108-24031526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 236
               

               
Conread position:
               
7-427
               

               
Cow position:
               
chr6:24004280-24004690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
39, 83
               

               
Conread position:
               
7-437
               

               
Cow position:
               
chr6:39358606-39358177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
215, 40
               

               
Conread position:
               
9-379
               

               
Cow position:
               
chr6:58747945-58748324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
76, 285
               

               
Conread position:
               
9-423
               

               
Cow position:
               
chr6:40713763-40713348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
159, 14
               

               
Conread position:
               
9-461
               

               
Cow position:
               
chr6:6343161-6343616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 261
               

               
Conread position:
               
12-277
               

               
Cow position:
               
chr6:57685897-57686161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
73, 207
               

               
Conread position:
               
12-284
               

               
Cow position:
               
chr6:54293849-54294120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
70, 141
               

               
Conread position:
               
12-305
               

               
Cow position:
               
chr6:7994729-7994435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
73, 22
               

               
Conread position:
               
13-350
               

               
Cow position:
               
chr6:18961783-18961439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 293
               

               
Conread position:
               
13-441
               

               
Cow position:
               
chr6:49422043-49421622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 115
               

               
Conread position:
               
15-447
               

               
Cow position:
               
chr6:53933099-53932675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
153, 66
               

               
Conread position:
               
15-522
               

               
Cow position:
               
chr6:5609701-5609207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
515
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 10
               

               
Conread position:
               
16-283
               

               
Cow position:
               
chr6:51246693-51246962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
69, 249
               

               
Conread position:
               
18-283
               

               
Cow position:
               
chr6:57597248-57596981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
102, 69
               

               
Conread position:
               
20-522
               

               
Cow position:
               
chr6:9736893-9736410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 64
               

               
Conread position:
               
24-429
               

               
Cow position:
               
chr6:54132569-54132968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 15
               

               
Conread position:
               
24-523
               

               
Cow position:
               
chr6:15242586-15243075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 39
               

               
Conread position:
               
25-227
               

               
Cow position:
               
chr6:20329772-20329981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
28-275
               

               
Cow position:
               
chr6:53710870-53711119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
18, 65
               

               
Conread position:
               
28-423
               

               
Cow position:
               
chr6:56849772-56850170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
56, 124
               

               
Conread position:
               
28-425
               

               
Cow position:
               
chr6:31535818-31535416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 198
               

               
Conread position:
               
29-228
               

               
Cow position:
               
chr6:1002479-1002276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
50, 40
               

               
Conread position:
               
29-526
               

               
Cow position:
               
chr6:38853903-38853417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 191
               

               
Conread position:
               
30-212
               

               
Cow position:
               
chr6:3719252-3719061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
31-520
               

               
Cow position:
               
chr6:54991235-54990752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 50
               

               
Conread position:
               
32-430
               

               
Cow position:
               
chr6:6063520-6063139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
53, 5
               

               
Conread position:
               
33-382
               

               
Cow position:
               
chr6:3929081-3929427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
14, 24
               

               
Conread position:
               
34-295
               

               
Cow position:
               
chr6:40138945-40138695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
50, 112
               

               
Conread position:
               
34-390
               

               
Cow position:
               
chr6:61113510-61113884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
45, 237
               

               
Conread position:
               
34-443
               

               
Cow position:
               
chr6:26915090-26915498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 259
               

               
Conread position:
               
34-443
               

               
Cow position:
               
chr6:41375513-41375940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
58, 34
               

               
Conread position:
               
35-414
               

               
Cow position:
               
chr6:20098203-20097818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
37-390
               

               
Cow position:
               
chr6:54600131-54600465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
14, 45
               

               
Conread position:
               
37-522
               

               
Cow position:
               
chr6:13040215-13040688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 201
               

               
Conread position:
               
38-521
               

               
Cow position:
               
chr6:67950724-67951191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 7
               

               
Conread position:
               
38-533
               

               
Cow position:
               
chr6:68376538-68376069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
45, 110
               

               
Conread position:
               
40-394
               

               
Cow position:
               
chr6:16746107-16746464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
40, 5
               

               
Conread position:
               
40-413
               

               
Cow position:
               
chr6:4383260-4383618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
309, 5
               

               
Conread position:
               
41-275
               

               
Cow position:
               
chr6:29239712-29239944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
35, 14
               

               
Conread position:
               
43-284
               

               
Cow position:
               
chr6:16593846-16594093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
42, 229
               

               
Conread position:
               
43-522
               

               
Cow position:
               
chr6:52478658-52478176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 263
               

               
Conread position:
               
44-432
               

               
Cow position:
               
chr6:9026287-9026678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
40, 276
               

               
Conread position:
               
44-518
               

               
Cow position:
               
chr6:60144407-60143968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
35, 99
               

               
Conread position:
               
45-252
               

               
Cow position:
               
chr6:388942-389151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
39, 71
               

               
Conread position:
               
45-276
               

               
Cow position:
               
chr6:7824534-7824768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
106, 36
               

               
Conread position:
               
45-388
               

               
Cow position:
               
chr6:47327297-47326958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
39, 239
               

               
Conread position:
               
45-420
               

               
Cow position:
               
chr6:60350528-60350145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 253
               

               
Conread position:
               
45-425
               

               
Cow position:
               
chr6:44194774-44194398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 204
               

               
Conread position:
               
45-432
               

               
Cow position:
               
chr6:48573111-48572721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
81, 49
               

               
Conread position:
               
46-291
               

               
Cow position:
               
chr6:36919208-36919456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
39, 59
               

               
Conread position:
               
46-393
               

               
Cow position:
               
chr6:130392-130043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 200
               

               
Conread position:
               
47-397
               

               
Cow position:
               
chr6:66874135-66874475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
37, 90
               

               
Conread position:
               
49-234
               

               
Cow position:
               
chr6:59302049-59301857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
35, 14
               

               
Conread position:
               
49-281
               

               
Cow position:
               
chr6:45160516-45160282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
227, 0
               

               
Conread position:
               
49-290
               

               
Cow position:
               
chr6:48425547-48425301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
23, 104
               

               
Conread position:
               
49-411
               

               
Cow position:
               
chr6:38614599-38614950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 107
               

               
Conread position:
               
50-353
               

               
Cow position:
               
chr6:21542096-21542403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 252
               

               
Conread position:
               
51-514
               

               
Cow position:
               
chr6:41733404-41733862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
33, 63
               

               
Conread position:
               
53-270
               

               
Cow position:
               
chr6:39994682-39994462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
31, 173
               

               
Conread position:
               
53-294
               

               
Cow position:
               
chr6:10635956-10636196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
179, 89
               

               
Conread position:
               
53-427
               

               
Cow position:
               
chr6:45065227-45064863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
27, 93
               

               
Conread position:
               
53-430
               

               
Cow position:
               
chr6:28977252-28976883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 97
               

               
Conread position:
               
53-531
               

               
Cow position:
               
chr6:36202607-36203065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 172
               

               
Conread position:
               
53-543
               

               
Cow position:
               
chr6:66433727-66434208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
26, 95
               

               
Conread position:
               
56-275
               

               
Cow position:
               
chr6:15923215-15922995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
95, 35
               

               
Conread position:
               
56-334
               

               
Cow position:
               
chr6:34031450-34031721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
28, 87
               

               
Conread position:
               
56-379
               

               
Cow position:
               
chr6:54430601-54430936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
23, 266
               

               
Conread position:
               
56-390
               

               
Cow position:
               
chr6:35415739-35415399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
75, 51
               

               
Conread position:
               
56-404
               

               
Cow position:
               
chr6:23248181-23247836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 173
               

               
Conread position:
               
56-417
               

               
Cow position:
               
chr6:35613627-35613273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
95, 31
               

               
Conread position:
               
56-423
               

               
Cow position:
               
chr6:17090381-17090748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
94, 25
               

               
Conread position:
               
56-425
               

               
Cow position:
               
chr6:35435785-35436146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
33, 91
               

               
Conread position:
               
56-440
               

               
Cow position:
               
chr6:7190337-7189952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 128
               

               
Conread position:
               
56-441
               

               
Cow position:
               
chr6:24468610-24468229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 79
               

               
Conread position:
               
56-522
               

               
Cow position:
               
chr6:55282507-55282057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 130
               

               
Conread position:
               
57-282
               

               
Cow position:
               
chr6:48344111-48344343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
57-284
               

               
Cow position:
               
chr6:49685368-49685597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
25, 144
               

               
Conread position:
               
57-328
               

               
Cow position:
               
chr6:25773598-25773331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
27, 81
               

               
Conread position:
               
57-426
               

               
Cow position:
               
chr6:45690810-45690457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 170
               

               
Conread position:
               
57-432
               

               
Cow position:
               
chr6:60442202-60442565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
94, 122
               

               
Conread position:
               
57-433
               

               
Cow position:
               
chr6:8965873-8966256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 153
               

               
Conread position:
               
57-513
               

               
Cow position:
               
chr6:46860384-46859944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 169
               

               
Conread position:
               
57-536
               

               
Cow position:
               
chr6:38207712-38207235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 210
               

               
Conread position:
               
58-394
               

               
Cow position:
               
chr6:899500-899172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 45
               

               
Conread position:
               
58-427
               

               
Cow position:
               
chr6:24223377-24223005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
27, 243
               

               
Conread position:
               
58-433
               

               
Cow position:
               
chr6:53651824-53652199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 171
               

               
Conread position:
               
58-439
               

               
Cow position:
               
chr6:53460787-53460402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 369
               

               
Conread position:
               
59-523
               

               
Cow position:
               
chr6:21456904-21456441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 117
               

               
Conread position:
               
60-531
               

               
Cow position:
               
chr6:4468533-4469010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
19, 124
               

               
Conread position:
               
63-269
               

               
Cow position:
               
chr6:66453590-66453797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
20, 82
               

               
Conread position:
               
63-273
               

               
Cow position:
               
chr6:46400616-46400409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
24, 102
               

               
Conread position:
               
63-288
               

               
Cow position:
               
chr6:30786359-30786138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
22, 90
               

               
Conread position:
               
63-309
               

               
Cow position:
               
chr6:61130693-61130441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
22, 225
               

               
Conread position:
               
63-366
               

               
Cow position:
               
chr6:57405335-57405032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
21, 36
               

               
Conread position:
               
63-420
               

               
Cow position:
               
chr6:38771085-38771427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
63-427
               

               
Cow position:
               
chr6:31564544-31564184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
21, 9
               

               
Conread position:
               
63-437
               

               
Cow position:
               
chr6:53025009-53024641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
21, 165
               

               
Conread position:
               
63-531
               

               
Cow position:
               
chr6:17997526-17997073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 187
               

               
Conread position:
               
64-414
               

               
Cow position:
               
chr6:15301027-15300692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
15, 86
               

               
Conread position:
               
64-419
               

               
Cow position:
               
chr6:49002934-49002594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
135, 85
               

               
Conread position:
               
64-429
               

               
Cow position:
               
chr6:37148988-37149344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 14
               

               
Conread position:
               
64-522
               

               
Cow position:
               
chr6:21869855-21869393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 101
               

               
Conread position:
               
64-522
               

               
Cow position:
               
chr6:67456493-67456974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
21, 249
               

               
Conread position:
               
65-366
               

               
Cow position:
               
chr6:24961936-24962238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
15, 159
               

               
Conread position:
               
65-436
               

               
Cow position:
               
chr6:21110760-21111113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
19, 84
               

               
Conread position:
               
65-522
               

               
Cow position:
               
chr6:38440973-38441415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
14, 126
               

               
Conread position:
               
66-423
               

               
Cow position:
               
chr6:7989621-7989264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
13, 33
               

               
Conread position:
               
69-284
               

               
Cow position:
               
chr6:61137160-61137387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
26, 142
               

               
Conread position:
               
69-337
               

               
Cow position:
               
chr6:6460337-6460605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 12
               

               
Conread position:
               
69-378
               

               
Cow position:
               
chr6:20157120-20157438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
53, 127
               

               
Conread position:
               
69-426
               

               
Cow position:
               
chr6:445106-445476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
11, 241
               

               
Conread position:
               
69-427
               

               
Cow position:
               
chr6:38641293-38641645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 102
               

               
Conread position:
               
69-447
               

               
Cow position:
               
chr6:19695602-19695979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
88, 112
               

               
Conread position:
               
69-533
               

               
Cow position:
               
chr6:6098487-6098003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 104
               

               
Conread position:
               
69-533
               

               
Cow position:
               
chr6:51581463-51581011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 186
               

               
Conread position:
               
70-426
               

               
Cow position:
               
chr6:51463820-51463481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
14, 78
               

               
Conread position:
               
71-526
               

               
Cow position:
               
chr6:66131105-66131558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 72
               

               
Conread position:
               
72-427
               

               
Cow position:
               
chr6:528478-528130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
17, 9
               

               
Conread position:
               
73-421
               

               
Cow position:
               
chr6:21231335-21231673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 92
               

               
Conread position:
               
73-437
               

               
Cow position:
               
chr6:59069829-59069457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
7, 179
               

               
Conread position:
               
74-362
               

               
Cow position:
               
chr6:58732513-58732222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
70, 206
               

               
Conread position:
               
75-414
               

               
Cow position:
               
chr6:8788236-8787896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
5, 189
               

               
Conread position:
               
77-286
               

               
Cow position:
               
chr6:33276843-33277059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
70, 50
               

               
Conread position:
               
77-390
               

               
Cow position:
               
chr6:48187777-48187462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
81, 195
               

               
Conread position:
               
77-435
               

               
Cow position:
               
chr6:63720003-63720362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 75
               

               
Conread position:
               
77-512
               

               
Cow position:
               
chr6:12092180-12091761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
272, 93
               

               
Conread position:
               
78-269
               

               
Cow position:
               
chr6:415900-416097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
71, 9
               

               
Conread position:
               
78-275
               

               
Cow position:
               
chr6:53731326-53731526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
78-424
               

               
Cow position:
               
chr6:16423504-16423852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 167
               

               
Conread position:
               
78-517
               

               
Cow position:
               
chr6:46865788-46865355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
73, 216
               

               
Conread position:
               
78-531
               

               
Cow position:
               
chr6:37199740-37199272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
35, 250
               

               
Conread position:
               
79-425
               

               
Cow position:
               
chr6:9452967-9452617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 166
               

               
Conread position:
               
81-273
               

               
Cow position:
               
chr6:8187711-8187516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
70, 103
               

               
Conread position:
               
81-355
               

               
Cow position:
               
chr6:14850906-14850632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
70, 90
               

               
Conread position:
               
81-398
               

               
Cow position:
               
chr6:28318217-28318522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
248, 89
               

               
Conread position:
               
81-418
               

               
Cow position:
               
chr6:32269062-32268743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
72, 28
               

               
Conread position:
               
81-443
               

               
Cow position:
               
chr6:53519815-53519456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
70, 97
               

               
Conread position:
               
81-532
               

               
Cow position:
               
chr6:29484899-29485328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 15
               

               
Conread position:
               
82-516
               

               
Cow position:
               
chr6:63252114-63251692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
69, 207
               

               
Conread position:
               
85-427
               

               
Cow position:
               
chr6:47574717-47575060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 196
               

               
Conread position:
               
87-522
               

               
Cow position:
               
chr6:34475736-34475323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
81, 31
               

               
Conread position:
               
88-390
               

               
Cow position:
               
chr6:52412669-52412976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
55, 202
               

               
Conread position:
               
88-440
               

               
Cow position:
               
chr6:50577335-50577687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
62, 198
               

               
Conread position:
               
88-462
               

               
Cow position:
               
chr6:47799113-47799481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
112, 48
               

               
Conread position:
               
88-535
               

               
Cow position:
               
chr6:6400763-6401216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 98
               

               
Conread position:
               
91-513
               

               
Cow position:
               
chr6:5114228-5113821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
60, 15
               

               
Conread position:
               
94-282
               

               
Cow position:
               
chr6:18968952-18968769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
94-427
               

               
Cow position:
               
chr6:52901062-52901392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
207, 39
               

               
Conread position:
               
94-429
               

               
Cow position:
               
chr6:582446-582118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
35, 22
               

               
Conread position:
               
95-421
               

               
Cow position:
               
chr6:1499460-1499788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 80
               

               
Conread position:
               
98-447
               

               
Cow position:
               
chr6:8125157-8125499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
181, 54
               

               
Conread position:
               
105-519
               

               
Cow position:
               
chr6:15447376-15446961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
42, 217
               

               
Conread position:
               
106-522
               

               
Cow position:
               
chr6:47355657-47356061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
44, 146
               

               
Conread position:
               
108-294
               

               
Cow position:
               
chr6:54287915-54288099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
91, 41
               

               
Conread position:
               
108-427
               

               
Cow position:
               
chr6:35993412-35993737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
43, 149
               

               
Conread position:
               
109-284
               

               
Cow position:
               
chr6:44984162-44984343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
109-382
               

               
Cow position:
               
chr6:60783706-60783979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
42, 58
               

               
Conread position:
               
110-371
               

               
Cow position:
               
chr6:59108779-59109043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
41, 32
               

               
Conread position:
               
110-523
               

               
Cow position:
               
chr6:15243088-15243497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 117
               

               
Conread position:
               
111-523
               

               
Cow position:
               
chr6:6965545-6965159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
236, 15
               

               
Conread position:
               
112-399
               

               
Cow position:
               
chr6:61608346-61608638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 192
               

               
Conread position:
               
117-426
               

               
Cow position:
               
chr6:14914395-14914083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
82, 39
               

               
Conread position:
               
117-472
               

               
Cow position:
               
chr6:48112048-48112395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
232, 49
               

               
Conread position:
               
117-530
               

               
Cow position:
               
chr6:19264656-19264258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 160
               

               
Conread position:
               
118-427
               

               
Cow position:
               
chr6:58590119-58590426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
33, 108
               

               
Conread position:
               
118-441
               

               
Cow position:
               
chr6:120084-120412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
27, 82
               

               
Conread position:
               
120-292
               

               
Cow position:
               
chr6:58364165-58363988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
30, 40
               

               
Conread position:
               
120-398
               

               
Cow position:
               
chr6:12543086-12542805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
37, 195
               

               
Conread position:
               
120-423
               

               
Cow position:
               
chr6:47640590-47640283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 186
               

               
Conread position:
               
120-426
               

               
Cow position:
               
chr6:7128553-7128251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
31, 52
               

               
Conread position:
               
120-429
               

               
Cow position:
               
chr6:60739862-60740170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
31, 162
               

               
Conread position:
               
120-516
               

               
Cow position:
               
chr6:11246611-11246997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
37, 24
               

               
Conread position:
               
120-518
               

               
Cow position:
               
chr6:57546369-57545998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
25, 79
               

               
Conread position:
               
120-531
               

               
Cow position:
               
chr6:19446107-19446497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
37, 101
               

               
Conread position:
               
121-515
               

               
Cow position:
               
chr6:4692136-4691736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
30, 183
               

               
Conread position:
               
124-431
               

               
Cow position:
               
chr6:9219124-9219423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
27, 149
               

               
Conread position:
               
125-522
               

               
Cow position:
               
chr6:17313582-17313973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
24, 141
               

               
Conread position:
               
125-523
               

               
Cow position:
               
chr6:46283146-46282756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 107
               

               
Conread position:
               
126-433
               

               
Cow position:
               
chr6:57571326-57571638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
20, 172
               

               
Conread position:
               
129-522
               

               
Cow position:
               
chr6:4559447-4559068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
65, 151
               

               
Conread position:
               
130-522
               

               
Cow position:
               
chr6:19996477-19996850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
19, 37
               

               
Conread position:
               
135-360
               

               
Cow position:
               
chr6:37376654-37376427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
29, 11
               

               
Conread position:
               
137-410
               

               
Cow position:
               
chr6:21399888-21399620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
20, 5
               

               
Conread position:
               
137-423
               

               
Cow position:
               
chr6:29000057-28999790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
19, 5
               

               
Conread position:
               
137-426
               

               
Cow position:
               
chr6:60118015-60118300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
57, 5
               

               
Conread position:
               
137-522
               

               
Cow position:
               
chr6:38640096-38640466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 5
               

               
Conread position:
               
141-515
               

               
Cow position:
               
chr6:62669742-62670099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
10, 25
               

               
Conread position:
               
142-448
               

               
Cow position:
               
chr6:50975931-50976224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
205, 9
               

               
Conread position:
               
143-418
               

               
Cow position:
               
chr6:23402115-23401848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
206, 8
               

               
Conread position:
               
147-379
               

               
Cow position:
               
chr6:16266597-16266830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
52, 17
               

               
Conread position:
               
150-394
               

               
Cow position:
               
chr6:55209434-55209678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
8, 121
               

               
Conread position:
               
152-394
               

               
Cow position:
               
chr6:50467016-50467256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
45, 109
               

               
Conread position:
               
152-433
               

               
Cow position:
               
chr6:32287519-32287795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
195, 136
               

               
Conread position:
               
152-522
               

               
Cow position:
               
chr6:21234925-21235282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
90, 97
               

               
Conread position:
               
152-523
               

               
Cow position:
               
chr6:25615221-25614854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 26
               

               
Conread position:
               
154-429
               

               
Cow position:
               
chr6:21514736-21514453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
41, 143
               

               
Conread position:
               
155-451
               

               
Cow position:
               
chr6:58597620-58597329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 83
               

               
Conread position:
               
159-547
               

               
Cow position:
               
chr6:10039609-10039984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
41, 77
               

               
Conread position:
               
161-423
               

               
Cow position:
               
chr6:59603317-59603058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
187, 48
               

               
Conread position:
               
166-497
               

               
Cow position:
               
chr6:61168670-61168975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
183, 56
               

               
Conread position:
               
166-530
               

               
Cow position:
               
chr6:59718691-59719054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
111, 139
               

               
Conread position:
               
167-421
               

               
Cow position:
               
chr6:7119714-7119471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
110, 51
               

               
Conread position:
               
170-427
               

               
Cow position:
               
chr6:1429538-1429794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
65, 28
               

               
Conread position:
               
170-429
               

               
Cow position:
               
chr6:58370652-58370905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
30, 145
               

               
Conread position:
               
171-433
               

               
Cow position:
               
chr6:61524301-61524046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
105, 67
               

               
Conread position:
               
172-429
               

               
Cow position:
               
chr6:17794855-17794609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
28, 46
               

               
Conread position:
               
173-394
               

               
Cow position:
               
chr6:54208237-54208014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
26, 16
               

               
Conread position:
               
175-426
               

               
Cow position:
               
chr6:66375426-66375180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
172, 94
               

               
Conread position:
               
179-426
               

               
Cow position:
               
chr6:143460-143222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
170, 19
               

               
Conread position:
               
180-475
               

               
Cow position:
               
chr6:37332016-37332310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 66
               

               
Conread position:
               
185-532
               

               
Cow position:
               
chr6:51968981-51969350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
79, 95
               

               
Conread position:
               
189-425
               

               
Cow position:
               
chr6:17245689-17245466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
59, 89
               

               
Conread position:
               
191-422
               

               
Cow position:
               
chr6:4702903-4702675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
101, 53
               

               
Conread position:
               
192-522
               

               
Cow position:
               
chr6:694226-693910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
157, 50
               

               
Conread position:
               
194-429
               

               
Cow position:
               
chr6:22985935-22985697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
79, 109
               

               
Conread position:
               
194-461
               

               
Cow position:
               
chr6:23466106-23465846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
154, 80
               

               
Conread position:
               
194-522
               

               
Cow position:
               
chr6:33509713-33510024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
78, 117
               

               
Conread position:
               
197-426
               

               
Cow position:
               
chr6:17068723-17068495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
153, 103
               

               
Conread position:
               
198-371
               

               
Cow position:
               
chr6:36493622-36493443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
103, 71
               

               
Conread position:
               
204-400
               

               
Cow position:
               
chr6:15022615-15022420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
143, 93
               

               
Conread position:
               
204-429
               

               
Cow position:
               
chr6:37395475-37395245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
72, 113
               

               
Conread position:
               
204-444
               

               
Cow position:
               
chr6:67643758-67643520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
22, 17
               

               
Conread position:
               
204-465
               

               
Cow position:
               
chr6:9302783-9302529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
12, 81
               

               
Conread position:
               
207-371
               

               
Cow position:
               
chr6:67615495-67615332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
142, 94
               

               
Conread position:
               
207-439
               

               
Cow position:
               
chr6:60468173-60468406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
140, 91
               

               
Conread position:
               
207-450
               

               
Cow position:
               
chr6:18118116-18117874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
73, 99
               

               
Conread position:
               
207-522
               

               
Cow position:
               
chr6:24536606-24536291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
74, 202
               

               
Conread position:
               
208-462
               

               
Cow position:
               
chr6:28179009-28178765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
74, 45
               

               
Conread position:
               
209-425
               

               
Cow position:
               
chr6:59770165-59770375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
214-531
               

               
Cow position:
               
chr6:18144136-18144445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
122, 30
               

               
Conread position:
               
218-429
               

               
Cow position:
               
chr6:68652406-68652195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
68, 77
               

               
Conread position:
               
220-523
               

               
Cow position:
               
chr6:32809225-32809552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
58, 72
               

               
Conread position:
               
223-423
               

               
Cow position:
               
chr6:31078920-31078719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
47, 65
               

               
Conread position:
               
223-513
               

               
Cow position:
               
chr6:68816118-68816396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
70, 75
               

               
Conread position:
               
225-524
               

               
Cow position:
               
chr6:3350973-3351265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
52, 211
               

               
Conread position:
               
226-390
               

               
Cow position:
               
chr6:28973080-28972919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
123, 54
               

               
Conread position:
               
226-429
               

               
Cow position:
               
chr6:2078865-2078658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
75, 89
               

               
Conread position:
               
226-440
               

               
Cow position:
               
chr6:1422440-1422652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
25, 62
               

               
Conread position:
               
232-426
               

               
Cow position:
               
chr6:66570398-66570592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
73, 36
               

               
Conread position:
               
233-429
               

               
Cow position:
               
chr6:32517138-32516955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
238-420
               

               
Cow position:
               
chr6:32853153-32853334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
63, 32
               

               
Conread position:
               
238-534
               

               
Cow position:
               
chr6:60266215-60265921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
111, 39
               

               
Conread position:
               
239-427
               

               
Cow position:
               
chr6:19259377-19259188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
33, 63
               

               
Conread position:
               
240-461
               

               
Cow position:
               
chr6:19131398-19131617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
45, 39
               

               
Conread position:
               
242-433
               

               
Cow position:
               
chr6:49437303-49437492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
106, 54
               

               
Conread position:
               
243-401
               

               
Cow position:
               
chr6:54083019-54082861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
75, 65
               

               
Conread position:
               
243-433
               

               
Cow position:
               
chr6:36921003-36920817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
50, 18
               

               
Conread position:
               
245-449
               

               
Cow position:
               
chr6:67451399-67451196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
32, 46
               

               
Conread position:
               
245-520
               

               
Cow position:
               
chr6:63065798-63066070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
18, 56
               

               
Conread position:
               
246-429
               

               
Cow position:
               
chr6:62056587-62056769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
33, 44
               

               
Conread position:
               
246-531
               

               
Cow position:
               
chr6:18904078-18903793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
67, 40
               

               
Conread position:
               
250-435
               

               
Cow position:
               
chr6:53089986-53090169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
42, 51
               

               
Conread position:
               
288-530
               

               
Cow position:
               
chr6:58227388-58227638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
61, 8
               

               
Conread position:
               
300-438
               

               
Cow position:
               
chr6:12623541-12623677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
47, 73
               

               
Conread position:
               
311-443
               

               
Cow position:
               
chr6:23938097-23938231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
311-453
               

               
Cow position:
               
chr6:54349731-54349875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
312-424
               

               
Cow position:
               
chr6:43651790-43651903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
312-442
               

               
Cow position:
               
chr6:51933592-51933717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
312-522
               

               
Cow position:
               
chr6:21083503-21083306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
37, 141
               

               
Conread position:
               
315-464
               

               
Cow position:
               
chr6:18422949-18422803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
54, 34
               

               
Conread position:
               
317-476
               

               
Cow position:
               
chr6:28900369-28900530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
32, 106
               

               
Conread position:
               
320-532
               

               
Cow position:
               
chr6:14915344-14915137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
102, 29
               

               
Conread position:
               
324-522
               

               
Cow position:
               
chr6:60186613-60186416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
25, 99
               

               
Conread position:
               
333-553
               

               
Cow position:
               
chr6:36938926-36939136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
16, 90
               

               
Conread position:
               
343-531
               

               
Cow position:
               
chr6:10636203-10636389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
6, 84
               

               
Conread position:
               
346-531
               

               
Cow position:
               
chr6:34498811-34499003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
349-521
               

               
Cow position:
               
chr6:17194287-17194461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
117, 73
               

               
Conread position:
               
349-522
               

               
Cow position:
               
chr6:49645884-49646058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
117, 67
               

               
Conread position:
               
360-515
               

               
Cow position:
               
chr6:34034513-34034679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
25, 65
               

               
Conread position:
               
364-521
               

               
Cow position:
               
chr6:67044645-67044487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
91, 59
               
Show alignments to all cow chromosomes.