Cow genome map
| Conread name: | Ova1-OVRM10066H07 |
| Conread position: | 1-343 |
| Cow position: | chr25:346460-346802 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 212 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 138, 144 |
| Conread position: | 1-363 |
| Cow position: | chr25:36800811-36801173 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 223 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 303, 291 |
| Conread position: | 1-366 |
| Cow position: | chr25:25652620-25652985 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 226 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 224, 232 |
| Conread position: | 1-368 |
| Cow position: | chr25:25652452-25652819 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 224 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-369 |
| Cow position: | chr25:25652368-25652736 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 231 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 304, 273 |
| Conread position: | 1-369 |
| Cow position: | chr25:34732596-34732228 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-369 |
| Cow position: | chr25:34769776-34769408 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 236 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-375 |
| Cow position: | chr25:33298995-33299369 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 41, 32 |
| Conread position: | 1-380 |
| Cow position: | chr25:25652872-25653251 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 241 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 201, 197 |
| Conread position: | 2-327 |
| Cow position: | chr25:33127899-33128224 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 215 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 264, 257 |
| Conread position: | 2-364 |
| Cow position: | chr25:25652789-25653151 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 220 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 134, 108 |
| Conread position: | 2-365 |
| Cow position: | chr25:33157208-33156845 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 241 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 212, 219 |
| Conread position: | 2-369 |
| Cow position: | chr25:33157376-33157009 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 243 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 304, 278 |
| Conread position: | 2-392 |
| Cow position: | chr25:34713879-34714269 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 194, 185 |
| Conread position: | 2-395 |
| Cow position: | chr25:36801472-36801865 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 246 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-396 |
| Cow position: | chr25:33299332-33299726 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 234 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-381 |
| Cow position: | chr25:33127732-33128110 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-278 |
| Cow position: | chr25:25653043-25653317 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 178 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 33, 26 |
| Conread position: | 4-351 |
| Cow position: | chr25:25652203-25652550 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-353 |
| Cow position: | chr25:33157290-33156941 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 232 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 33, 27 |
| Conread position: | 4-363 |
| Cow position: | chr25:4657450-4657091 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 223 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 39, 31 |
| Conread position: | 8-346 |
| Cow position: | chr25:33157118-33156781 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 29, 23 |
| Conread position: | 8-357 |
| Cow position: | chr25:36801562-36801911 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 104, 114 |
| Conread position: | 9-361 |
| Cow position: | chr25:36800987-36801339 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 216 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 35, 24 |
| Conread position: | 12-366 |
| Cow position: | chr25:34770017-34769663 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 224 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 113, 126 |
| Conread position: | 12-369 |
| Cow position: | chr25:23420322-23420679 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 234 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 12-381 |
| Cow position: | chr25:34447297-34447666 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 232 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 12-381 |
| Cow position: | chr25:34769933-34769564 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-363 |
| Cow position: | chr25:25652968-25653318 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 215 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 285, 292 |
| Conread position: | 13-363 |
| Cow position: | chr25:33298671-33299021 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 221 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 292, 286 |
| Conread position: | 13-363 |
| Cow position: | chr25:33298839-33299189 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 212 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-364 |
| Cow position: | chr25:34770100-34769749 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 225 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-392 |
| Cow position: | chr25:33145038-33145417 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 245 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 292, 279 |
| Conread position: | 13-396 |
| Cow position: | chr25:33127826-33128209 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 244 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 16-396 |
| Cow position: | chr25:34433632-34434006 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 231 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 177, 168 |
| Conread position: | 27-368 |
| Cow position: | chr25:3664137-3664478 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 27-369 |
| Cow position: | chr25:34763284-34763623 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 209 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 172, 0 |
| Conread position: | 28-366 |
| Cow position: | chr25:34714157-34714495 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 209 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 209, 217 |
| Conread position: | 33-344 |
| Cow position: | chr25:34733968-34733654 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 194 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 11, 267 |
| Conread position: | 41-374 |
| Cow position: | chr25:33299203-33299536 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 224 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 76, 81 |
| Conread position: | 41-396 |
| Cow position: | chr25:33298951-33299306 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 223 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 49-366 |
| Cow position: | chr25:34447250-34447567 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 203 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 240, 228 |
| Conread position: | 50-353 |
| Cow position: | chr25:34763139-34763442 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 200 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 52-319 |
| Cow position: | chr25:36801690-36801957 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 170 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 251, 240 |
| Conread position: | 52-329 |
| Cow position: | chr25:326986-327263 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 132, 142 |
| Conread position: | 52-364 |
| Cow position: | chr25:36800946-36801258 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 73, 86 |
| Conread position: | 52-365 |
| Cow position: | chr25:33157494-33157181 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 250, 228 |
| Conread position: | 52-374 |
| Cow position: | chr25:18642192-18641867 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 210 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 65, 90 |
| Conread position: | 52-374 |
| Cow position: | chr25:22235976-22236298 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 203 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 245, 225 |
| Conread position: | 52-380 |
| Cow position: | chr25:25652335-25652663 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 52-381 |
| Cow position: | chr25:34447505-34447826 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 216 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 201, 0 |
| Conread position: | 52-395 |
| Cow position: | chr25:34447085-34447428 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 224 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 52-396 |
| Cow position: | chr25:33298794-33299138 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 208 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 52-396 |
| Cow position: | chr25:33299130-33299474 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 221 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 64-319 |
| Cow position: | chr25:34763486-34763741 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 64-381 |
| Cow position: | chr25:34447181-34447497 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 304, 0 |
| Conread position: | 64-396 |
| Cow position: | chr25:326486-326820 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 208 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 15, 307 |
| Conread position: | 66-374 |
| Cow position: | chr25:34734016-34733708 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 188 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 66-391 |
| Cow position: | chr25:34732615-34732290 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 210 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 72-381 |
| Cow position: | chr25:346447-346756 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 187, 194 |
| Conread position: | 72-381 |
| Cow position: | chr25:366724-367033 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 73-363 |
| Cow position: | chr25:33298479-33298769 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 186 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 68, 77 |
| Conread position: | 73-380 |
| Cow position: | chr25:25652188-25652495 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 44, 49 |
| Conread position: | 76-354 |
| Cow position: | chr25:3636307-3636029 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 94-396 |
| Cow position: | chr25:23420320-23420622 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 39, 45 |
| Conread position: | 95-396 |
| Cow position: | chr25:33145036-33145337 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 100-380 |
| Cow position: | chr25:33127661-33127941 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 120-382 |
| Cow position: | chr25:34432983-34433246 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 243, 0 |
| Conread position: | 166-374 |
| Cow position: | chr25:34770115-34769907 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 220-380 |
| Cow position: | chr25:22235892-22236052 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 115 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.