Cow genome map
| Conread name: | Ova1-OVRM10069A04 |
| Conread position: | 63-318 |
| Cow position: | chr1:58148826-58149079 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 75, 29 |
| Conread position: | 87-237 |
| Cow position: | chr1:29891918-29891768 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 87-257 |
| Cow position: | chr1:32500320-32500493 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 92, 75 |
| Conread position: | 87-390 |
| Cow position: | chr1:29838454-29838146 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 226 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 48, 192 |
| Conread position: | 87-407 |
| Cow position: | chr1:98296805-98297125 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 249 |
| Conread position: | 88-263 |
| Cow position: | chr1:78028176-78028002 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 95, 16 |
| Conread position: | 88-285 |
| Cow position: | chr1:49739687-49739485 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 88-390 |
| Cow position: | chr1:33419728-33420031 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 228 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 6, 206 |
| Conread position: | 88-390 |
| Cow position: | chr1:39060653-39060354 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 185 |
| Conread position: | 88-489 |
| Cow position: | chr1:5191953-5192345 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 183 |
| Conread position: | 88-595 |
| Cow position: | chr1:26406434-26406943 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 332 |
| Conread position: | 95-267 |
| Cow position: | chr1:99050738-99050559 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 51, 82 |
| Conread position: | 96-265 |
| Cow position: | chr1:47591204-47591365 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 144, 86 |
| Conread position: | 96-267 |
| Cow position: | chr1:91032176-91032338 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 82, 99 |
| Conread position: | 96-390 |
| Cow position: | chr1:44175907-44175626 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 42, 75 |
| Conread position: | 97-269 |
| Cow position: | chr1:31660393-31660571 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 98-267 |
| Cow position: | chr1:13697075-13696901 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 131 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 100-267 |
| Cow position: | chr1:45181250-45181418 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 102, 94 |
| Conread position: | 100-267 |
| Cow position: | chr1:66600068-66599897 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 9, 88 |
| Conread position: | 100-267 |
| Cow position: | chr1:87736871-87737041 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 84, 50 |
| Conread position: | 103-265 |
| Cow position: | chr1:57681953-57681789 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 80, 19 |
| Conread position: | 109-390 |
| Cow position: | chr1:97176031-97175762 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 211 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 29, 165 |
| Conread position: | 121-264 |
| Cow position: | chr1:46883454-46883594 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 62, 71 |
| Conread position: | 173-543 |
| Cow position: | chr1:52388556-52388923 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 9 |
| Conread position: | 187-493 |
| Cow position: | chr1:42182698-42182390 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 35 |
| Conread position: | 257-489 |
| Cow position: | chr1:92612613-92612385 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 179, 14 |
| Conread position: | 262-552 |
| Cow position: | chr1:17488112-17488401 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 229 |
| Conread position: | 262-594 |
| Cow position: | chr1:79743524-79743192 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 316, 227 |
| Conread position: | 269-490 |
| Cow position: | chr1:100753787-100754007 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 208, 146 |
| Conread position: | 271-533 |
| Cow position: | chr1:49739275-49739030 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 273-452 |
| Cow position: | chr1:82516158-82515981 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 146 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 167, 0 |
| Conread position: | 273-458 |
| Cow position: | chr1:97510030-97509848 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 149 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 273-488 |
| Cow position: | chr1:87946525-87946740 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 167 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 274-487 |
| Cow position: | chr1:95425678-95425878 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 163 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 174, 51 |
| Conread position: | 274-492 |
| Cow position: | chr1:32350538-32350751 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 173, 108 |
| Conread position: | 275-490 |
| Cow position: | chr1:12040684-12040482 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 175, 105 |
| Conread position: | 275-501 |
| Cow position: | chr1:79626687-79626897 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 56, 111 |
| Conread position: | 279-489 |
| Cow position: | chr1:98246406-98246198 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 170 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 189, 27 |
| Conread position: | 281-561 |
| Cow position: | chr1:102460091-102459819 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 205 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 117, 65 |
| Conread position: | 284-482 |
| Cow position: | chr1:6714403-6714596 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 19, 9 |
| Conread position: | 284-598 |
| Cow position: | chr1:52394028-52394326 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 287-533 |
| Cow position: | chr1:102505799-102505564 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 93, 70 |
| Conread position: | 302-576 |
| Cow position: | chr1:39506658-39506933 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 94, 114 |
| Conread position: | 304-541 |
| Cow position: | chr1:68530804-68530569 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 91, 113 |
| Conread position: | 307-546 |
| Cow position: | chr1:92758374-92758619 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 129, 69 |
| Conread position: | 313-489 |
| Cow position: | chr1:102532046-102531868 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 347-626 |
| Cow position: | chr1:12646749-12647039 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 67, 53 |
| Conread position: | 388-571 |
| Cow position: | chr1:5304564-5304753 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 98, 0 |
Show alignments to all cow chromosomes.