Cow genome map
| Conread name: | Ova1-OVRM10069A04 |
| Conread position: | 72-192 |
| Cow position: | chr5:2267360-2267481 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 95 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 73-267 |
| Cow position: | chr5:17358946-17358745 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 9, 67 |
| Conread position: | 78-489 |
| Cow position: | chr5:56621818-56621402 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 407 |
| Conread position: | 81-504 |
| Cow position: | chr5:48194066-48193660 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 27 |
| Conread position: | 86-382 |
| Cow position: | chr5:48219397-48219683 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 203 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 13, 33 |
| Conread position: | 87-387 |
| Cow position: | chr5:43793413-43793125 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 12, 43 |
| Conread position: | 87-396 |
| Cow position: | chr5:75183387-75183702 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 88-237 |
| Cow position: | chr5:27991411-27991261 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 95, 139 |
| Conread position: | 88-255 |
| Cow position: | chr5:45222192-45222022 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 88-257 |
| Cow position: | chr5:22847461-22847297 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 94, 61 |
| Conread position: | 88-331 |
| Cow position: | chr5:43891844-43891598 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 11, 148 |
| Conread position: | 88-385 |
| Cow position: | chr5:37944688-37944396 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 221 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 6, 193 |
| Conread position: | 88-388 |
| Cow position: | chr5:48190778-48191071 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 47 |
| Conread position: | 88-390 |
| Cow position: | chr5:43791591-43791891 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 162 |
| Conread position: | 88-390 |
| Cow position: | chr5:49377179-49376875 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 214 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 37, 144 |
| Conread position: | 88-390 |
| Cow position: | chr5:57359279-57358977 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 223 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 8, 57 |
| Conread position: | 94-258 |
| Cow position: | chr5:10878481-10878318 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 87, 100 |
| Conread position: | 96-267 |
| Cow position: | chr5:57384985-57385156 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 110, 7 |
| Conread position: | 96-390 |
| Cow position: | chr5:41519622-41519338 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 215 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 84, 69 |
| Conread position: | 97-257 |
| Cow position: | chr5:19004738-19004573 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 98-264 |
| Cow position: | chr5:56074696-56074866 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 98-267 |
| Cow position: | chr5:60971745-60971572 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 98-267 |
| Cow position: | chr5:61482762-61482589 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 99-267 |
| Cow position: | chr5:30643810-30643638 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 100-265 |
| Cow position: | chr5:55715570-55715401 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 100-489 |
| Cow position: | chr5:47859509-47859129 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 163 |
| Conread position: | 106-385 |
| Cow position: | chr5:39424310-39424036 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 32, 44 |
| Conread position: | 124-390 |
| Cow position: | chr5:29864313-29864580 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 189 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 22, 186 |
| Conread position: | 146-267 |
| Cow position: | chr5:48135032-48135156 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 237-415 |
| Cow position: | chr5:57083311-57083134 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 46, 18 |
| Conread position: | 263-398 |
| Cow position: | chr5:23758053-23758188 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 104 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 263-489 |
| Cow position: | chr5:44552113-44551906 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 263-576 |
| Cow position: | chr5:17682551-17682867 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 71 |
| Conread position: | 264-414 |
| Cow position: | chr5:43440734-43440585 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 9, 117 |
| Conread position: | 273-386 |
| Cow position: | chr5:22312844-22312957 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 92 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 273-594 |
| Cow position: | chr5:58760959-58760639 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 305, 216 |
| Conread position: | 279-520 |
| Cow position: | chr5:50226105-50225865 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 0 |
| Conread position: | 284-598 |
| Cow position: | chr5:38410952-38410659 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 222 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 294, 79 |
| Conread position: | 289-489 |
| Cow position: | chr5:69535017-69535216 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 156 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 155, 135 |
| Conread position: | 297-489 |
| Cow position: | chr5:43115655-43115464 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 151 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 118, 0 |
| Conread position: | 304-594 |
| Cow position: | chr5:47883183-47882883 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 38 |
| Conread position: | 365-589 |
| Cow position: | chr5:46413891-46414098 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 213, 13 |
Show alignments to all cow chromosomes.