Cow genome map
| Conread name: | Ova1-OVRM10074B08 |
| Conread position: | 1-231 |
| Cow position: | chr11:2358400-2358635 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 42, 199 |
| Conread position: | 1-618 |
| Cow position: | chr11:67451523-67452153 (view UCSC Genome Browser custom track) |
| Alignm length: | 651 |
| Alignm identity: | 417 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 37, 70 |
| Conread position: | 1-696 |
| Cow position: | chr11:1489138-1488432 (view UCSC Genome Browser custom track) |
| Alignm length: | 732 |
| Alignm identity: | 472 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 204 |
| Conread position: | 1-704 |
| Cow position: | chr11:17106652-17105934 (view UCSC Genome Browser custom track) |
| Alignm length: | 741 |
| Alignm identity: | 482 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 208 |
| Conread position: | 1-704 |
| Cow position: | chr11:67154715-67155431 (view UCSC Genome Browser custom track) |
| Alignm length: | 740 |
| Alignm identity: | 474 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 87 |
| Conread position: | 1-718 |
| Cow position: | chr11:67845540-67844804 (view UCSC Genome Browser custom track) |
| Alignm length: | 755 |
| Alignm identity: | 484 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 239 |
| Conread position: | 1-722 |
| Cow position: | chr11:60033184-60032473 (view UCSC Genome Browser custom track) |
| Alignm length: | 748 |
| Alignm identity: | 491 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 109 |
| Conread position: | 2-238 |
| Cow position: | chr11:45921575-45921328 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 40, 63 |
| Conread position: | 3-718 |
| Cow position: | chr11:12357368-12356634 (view UCSC Genome Browser custom track) |
| Alignm length: | 756 |
| Alignm identity: | 483 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 42 |
| Conread position: | 8-720 |
| Cow position: | chr11:46779811-46779092 (view UCSC Genome Browser custom track) |
| Alignm length: | 751 |
| Alignm identity: | 490 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 83 |
| Conread position: | 11-703 |
| Cow position: | chr11:39804766-39805475 (view UCSC Genome Browser custom track) |
| Alignm length: | 724 |
| Alignm identity: | 453 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 27, 195 |
| Conread position: | 11-718 |
| Cow position: | chr11:26123890-26123156 (view UCSC Genome Browser custom track) |
| Alignm length: | 748 |
| Alignm identity: | 481 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 201 |
| Conread position: | 11-718 |
| Cow position: | chr11:38834404-38833703 (view UCSC Genome Browser custom track) |
| Alignm length: | 732 |
| Alignm identity: | 471 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 194 |
| Conread position: | 12-714 |
| Cow position: | chr11:40581444-40582138 (view UCSC Genome Browser custom track) |
| Alignm length: | 721 |
| Alignm identity: | 457 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 44 |
| Conread position: | 13-614 |
| Cow position: | chr11:15943322-15942732 (view UCSC Genome Browser custom track) |
| Alignm length: | 632 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 158 |
| Conread position: | 15-704 |
| Cow position: | chr11:20733185-20732479 (view UCSC Genome Browser custom track) |
| Alignm length: | 725 |
| Alignm identity: | 467 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 32 |
| Conread position: | 16-719 |
| Cow position: | chr11:58401567-58402275 (view UCSC Genome Browser custom track) |
| Alignm length: | 730 |
| Alignm identity: | 444 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 118, 36 |
| Conread position: | 21-718 |
| Cow position: | chr11:56650835-56651530 (view UCSC Genome Browser custom track) |
| Alignm length: | 718 |
| Alignm identity: | 435 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 63, 8 |
| Conread position: | 23-718 |
| Cow position: | chr11:10848515-10849205 (view UCSC Genome Browser custom track) |
| Alignm length: | 726 |
| Alignm identity: | 465 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 62, 22 |
| Conread position: | 23-718 |
| Cow position: | chr11:23881094-23881788 (view UCSC Genome Browser custom track) |
| Alignm length: | 722 |
| Alignm identity: | 466 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 22 |
| Conread position: | 23-718 |
| Cow position: | chr11:24394378-24395078 (view UCSC Genome Browser custom track) |
| Alignm length: | 724 |
| Alignm identity: | 463 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 22 |
| Conread position: | 23-718 |
| Cow position: | chr11:26548588-26549293 (view UCSC Genome Browser custom track) |
| Alignm length: | 732 |
| Alignm identity: | 476 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 22 |
| Conread position: | 23-718 |
| Cow position: | chr11:29667543-29666827 (view UCSC Genome Browser custom track) |
| Alignm length: | 736 |
| Alignm identity: | 479 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 22 |
| Conread position: | 23-718 |
| Cow position: | chr11:44582279-44581578 (view UCSC Genome Browser custom track) |
| Alignm length: | 726 |
| Alignm identity: | 473 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 22 |
| Conread position: | 24-718 |
| Cow position: | chr11:23249411-23248715 (view UCSC Genome Browser custom track) |
| Alignm length: | 717 |
| Alignm identity: | 456 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 188 |
| Conread position: | 25-602 |
| Cow position: | chr11:28740252-28739671 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 391 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 38, 28 |
| Conread position: | 26-680 |
| Cow position: | chr11:44517800-44517141 (view UCSC Genome Browser custom track) |
| Alignm length: | 681 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 21 |
| Conread position: | 26-701 |
| Cow position: | chr11:3494053-3494732 (view UCSC Genome Browser custom track) |
| Alignm length: | 701 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 21 |
| Conread position: | 26-711 |
| Cow position: | chr11:32452892-32453593 (view UCSC Genome Browser custom track) |
| Alignm length: | 721 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 21 |
| Conread position: | 26-718 |
| Cow position: | chr11:9733613-9732915 (view UCSC Genome Browser custom track) |
| Alignm length: | 720 |
| Alignm identity: | 461 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 21 |
| Conread position: | 28-718 |
| Cow position: | chr11:27657498-27658204 (view UCSC Genome Browser custom track) |
| Alignm length: | 721 |
| Alignm identity: | 457 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 107 |
| Conread position: | 28-718 |
| Cow position: | chr11:43513559-43512861 (view UCSC Genome Browser custom track) |
| Alignm length: | 721 |
| Alignm identity: | 456 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 57, 147 |
| Conread position: | 29-718 |
| Cow position: | chr11:19101426-19100724 (view UCSC Genome Browser custom track) |
| Alignm length: | 721 |
| Alignm identity: | 472 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 27 |
| Conread position: | 30-670 |
| Cow position: | chr11:17547231-17547878 (view UCSC Genome Browser custom track) |
| Alignm length: | 668 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 17 |
| Conread position: | 30-715 |
| Cow position: | chr11:28228700-28228005 (view UCSC Genome Browser custom track) |
| Alignm length: | 717 |
| Alignm identity: | 468 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 17 |
| Conread position: | 30-718 |
| Cow position: | chr11:19063004-19062309 (view UCSC Genome Browser custom track) |
| Alignm length: | 721 |
| Alignm identity: | 474 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 17 |
| Conread position: | 30-718 |
| Cow position: | chr11:30253302-30253991 (view UCSC Genome Browser custom track) |
| Alignm length: | 717 |
| Alignm identity: | 466 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 17 |
| Conread position: | 36-445 |
| Cow position: | chr11:22122886-22122483 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 262 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 42, 11 |
| Conread position: | 39-697 |
| Cow position: | chr11:21475203-21475849 (view UCSC Genome Browser custom track) |
| Alignm length: | 684 |
| Alignm identity: | 434 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 55, 8 |
| Conread position: | 41-318 |
| Cow position: | chr11:40507029-40506770 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 43, 80 |
| Conread position: | 42-686 |
| Cow position: | chr11:50949248-50948577 (view UCSC Genome Browser custom track) |
| Alignm length: | 683 |
| Alignm identity: | 420 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 6, 17 |
| Conread position: | 47-718 |
| Cow position: | chr11:47738456-47737781 (view UCSC Genome Browser custom track) |
| Alignm length: | 701 |
| Alignm identity: | 462 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 154 |
| Conread position: | 59-704 |
| Cow position: | chr11:53430935-53430278 (view UCSC Genome Browser custom track) |
| Alignm length: | 676 |
| Alignm identity: | 441 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 62 |
| Conread position: | 82-720 |
| Cow position: | chr11:73134423-73135065 (view UCSC Genome Browser custom track) |
| Alignm length: | 669 |
| Alignm identity: | 429 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 31, 118 |
| Conread position: | 90-602 |
| Cow position: | chr11:34454981-34455448 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 40 |
| Conread position: | 137-697 |
| Cow position: | chr11:87142761-87143329 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 377 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 66, 57 |
| Conread position: | 142-704 |
| Cow position: | chr11:15986436-15987000 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 394 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 141, 53 |
| Conread position: | 142-718 |
| Cow position: | chr11:32079603-32079022 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 100 |
| Conread position: | 145-718 |
| Cow position: | chr11:86876696-86876117 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 383 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 58, 50 |
| Conread position: | 173-718 |
| Cow position: | chr11:9224384-9223818 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 357 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 171, 32 |
| Conread position: | 242-702 |
| Cow position: | chr11:55483494-55483959 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 324 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 36, 79 |
| Conread position: | 248-719 |
| Cow position: | chr11:38794720-38795196 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 321 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 14, 118 |
| Conread position: | 250-722 |
| Cow position: | chr11:31540521-31540991 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 330 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 29, 9 |
| Conread position: | 255-702 |
| Cow position: | chr11:31863370-31863840 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 309 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 29, 66 |
| Conread position: | 255-715 |
| Cow position: | chr11:37294972-37294503 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 303 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 23, 18 |
| Conread position: | 256-718 |
| Cow position: | chr11:44041994-44042477 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 322 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 28, 59 |
| Conread position: | 256-718 |
| Cow position: | chr11:61399818-61399336 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 116 |
| Conread position: | 256-720 |
| Cow position: | chr11:40405766-40405285 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 48 |
| Conread position: | 361-696 |
| Cow position: | chr11:42371203-42371554 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 241 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 103, 15 |
| Conread position: | 363-715 |
| Cow position: | chr11:40774633-40774267 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 252 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 102, 11 |
| Conread position: | 363-722 |
| Cow position: | chr11:74989731-74990111 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 252 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 101, 25 |
| Conread position: | 372-700 |
| Cow position: | chr11:26448202-26447859 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 230 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 92, 20 |
| Conread position: | 373-718 |
| Cow position: | chr11:20212764-20212401 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 253 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 94, 80 |
| Conread position: | 376-718 |
| Cow position: | chr11:8264920-8265279 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 246 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 88, 116 |
| Conread position: | 380-650 |
| Cow position: | chr11:44094213-44093921 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 84, 112 |
| Conread position: | 381-709 |
| Cow position: | chr11:39428379-39428036 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 231 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 10, 106 |
| Conread position: | 384-718 |
| Cow position: | chr11:32479406-32479053 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 248 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 92, 109 |
| Conread position: | 391-671 |
| Cow position: | chr11:18128042-18127751 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 144, 33 |
| Conread position: | 400-717 |
| Cow position: | chr11:4885550-4885221 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 219 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 56, 173 |
| Conread position: | 400-720 |
| Cow position: | chr11:21849072-21848740 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 226 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 64, 35 |
| Conread position: | 401-702 |
| Cow position: | chr11:22938438-22938129 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 217 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 78, 122 |
| Conread position: | 412-718 |
| Cow position: | chr11:27726479-27726152 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 227 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 59, 80 |
| Conread position: | 419-602 |
| Cow position: | chr11:4323955-4324143 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 55, 165 |
| Conread position: | 436-700 |
| Cow position: | chr11:75357742-75358005 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 36, 123 |
| Conread position: | 453-696 |
| Cow position: | chr11:24484709-24484970 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 471-718 |
| Cow position: | chr11:24291963-24292223 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 187 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 64, 14 |
| Conread position: | 507-718 |
| Cow position: | chr11:23125540-23125317 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 163 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 5, 43 |
Show alignments to all cow chromosomes.