Cow genome map
| Conread name: | Ova1-OVRM10074B08 |
| Conread position: | 1-236 |
| Cow position: | chr5:41960595-41960349 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 170 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 37, 139 |
| Conread position: | 1-480 |
| Cow position: | chr5:34287079-34286608 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 317 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 43, 74 |
| Conread position: | 1-696 |
| Cow position: | chr5:18560258-18559545 (view UCSC Genome Browser custom track) |
| Alignm length: | 735 |
| Alignm identity: | 475 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 207 |
| Conread position: | 1-696 |
| Cow position: | chr5:46777542-46778258 (view UCSC Genome Browser custom track) |
| Alignm length: | 735 |
| Alignm identity: | 477 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 207 |
| Conread position: | 1-704 |
| Cow position: | chr5:10775115-10774391 (view UCSC Genome Browser custom track) |
| Alignm length: | 744 |
| Alignm identity: | 492 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 200 |
| Conread position: | 1-704 |
| Cow position: | chr5:18273910-18274621 (view UCSC Genome Browser custom track) |
| Alignm length: | 736 |
| Alignm identity: | 474 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 106 |
| Conread position: | 1-718 |
| Cow position: | chr5:6587436-6586701 (view UCSC Genome Browser custom track) |
| Alignm length: | 757 |
| Alignm identity: | 481 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 86 |
| Conread position: | 1-718 |
| Cow position: | chr5:10842233-10841495 (view UCSC Genome Browser custom track) |
| Alignm length: | 757 |
| Alignm identity: | 481 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 208 |
| Conread position: | 1-718 |
| Cow position: | chr5:12731566-12730833 (view UCSC Genome Browser custom track) |
| Alignm length: | 754 |
| Alignm identity: | 489 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 207 |
| Conread position: | 1-718 |
| Cow position: | chr5:58197166-58197903 (view UCSC Genome Browser custom track) |
| Alignm length: | 759 |
| Alignm identity: | 500 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 206 |
| Conread position: | 2-354 |
| Cow position: | chr5:42751628-42751981 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 230 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 48, 165 |
| Conread position: | 2-718 |
| Cow position: | chr5:7142906-7142206 (view UCSC Genome Browser custom track) |
| Alignm length: | 732 |
| Alignm identity: | 458 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 22, 46 |
| Conread position: | 5-718 |
| Cow position: | chr5:3787088-3787823 (view UCSC Genome Browser custom track) |
| Alignm length: | 756 |
| Alignm identity: | 478 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 45, 33 |
| Conread position: | 11-718 |
| Cow position: | chr5:2915605-2916314 (view UCSC Genome Browser custom track) |
| Alignm length: | 732 |
| Alignm identity: | 470 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 104 |
| Conread position: | 11-718 |
| Cow position: | chr5:42936897-42937602 (view UCSC Genome Browser custom track) |
| Alignm length: | 740 |
| Alignm identity: | 465 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 29, 120 |
| Conread position: | 16-704 |
| Cow position: | chr5:59283490-59284174 (view UCSC Genome Browser custom track) |
| Alignm length: | 720 |
| Alignm identity: | 459 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 69, 29 |
| Conread position: | 23-696 |
| Cow position: | chr5:7275021-7275694 (view UCSC Genome Browser custom track) |
| Alignm length: | 701 |
| Alignm identity: | 455 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 24 |
| Conread position: | 23-718 |
| Cow position: | chr5:4070402-4071099 (view UCSC Genome Browser custom track) |
| Alignm length: | 724 |
| Alignm identity: | 468 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 22 |
| Conread position: | 23-718 |
| Cow position: | chr5:6153718-6153011 (view UCSC Genome Browser custom track) |
| Alignm length: | 730 |
| Alignm identity: | 485 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 22 |
| Conread position: | 23-718 |
| Cow position: | chr5:24099842-24100528 (view UCSC Genome Browser custom track) |
| Alignm length: | 718 |
| Alignm identity: | 468 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 22 |
| Conread position: | 23-718 |
| Cow position: | chr5:24295796-24296487 (view UCSC Genome Browser custom track) |
| Alignm length: | 726 |
| Alignm identity: | 465 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 62, 22 |
| Conread position: | 23-718 |
| Cow position: | chr5:55629175-55629869 (view UCSC Genome Browser custom track) |
| Alignm length: | 722 |
| Alignm identity: | 471 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 22 |
| Conread position: | 24-622 |
| Cow position: | chr5:3502931-3502321 (view UCSC Genome Browser custom track) |
| Alignm length: | 628 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 180 |
| Conread position: | 24-696 |
| Cow position: | chr5:10855640-10854955 (view UCSC Genome Browser custom track) |
| Alignm length: | 708 |
| Alignm identity: | 462 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 13 |
| Conread position: | 24-718 |
| Cow position: | chr5:10920017-10920722 (view UCSC Genome Browser custom track) |
| Alignm length: | 731 |
| Alignm identity: | 476 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 6 |
| Conread position: | 26-704 |
| Cow position: | chr5:35527119-35527791 (view UCSC Genome Browser custom track) |
| Alignm length: | 706 |
| Alignm identity: | 446 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 22, 79 |
| Conread position: | 26-715 |
| Cow position: | chr5:5104404-5105097 (view UCSC Genome Browser custom track) |
| Alignm length: | 716 |
| Alignm identity: | 470 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 21 |
| Conread position: | 26-718 |
| Cow position: | chr5:4757001-4756297 (view UCSC Genome Browser custom track) |
| Alignm length: | 726 |
| Alignm identity: | 474 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 21 |
| Conread position: | 26-718 |
| Cow position: | chr5:10813568-10812864 (view UCSC Genome Browser custom track) |
| Alignm length: | 725 |
| Alignm identity: | 474 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 21 |
| Conread position: | 26-718 |
| Cow position: | chr5:18121300-18120596 (view UCSC Genome Browser custom track) |
| Alignm length: | 726 |
| Alignm identity: | 474 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 21 |
| Conread position: | 26-718 |
| Cow position: | chr5:23959147-23958444 (view UCSC Genome Browser custom track) |
| Alignm length: | 725 |
| Alignm identity: | 477 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 21 |
| Conread position: | 26-718 |
| Cow position: | chr5:59061820-59062521 (view UCSC Genome Browser custom track) |
| Alignm length: | 723 |
| Alignm identity: | 474 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 17 |
| Conread position: | 27-712 |
| Cow position: | chr5:40923499-40922800 (view UCSC Genome Browser custom track) |
| Alignm length: | 717 |
| Alignm identity: | 452 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 29, 22 |
| Conread position: | 30-718 |
| Cow position: | chr5:4018012-4017325 (view UCSC Genome Browser custom track) |
| Alignm length: | 722 |
| Alignm identity: | 471 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 17 |
| Conread position: | 30-718 |
| Cow position: | chr5:31707749-31708447 (view UCSC Genome Browser custom track) |
| Alignm length: | 721 |
| Alignm identity: | 465 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 17 |
| Conread position: | 30-718 |
| Cow position: | chr5:49223302-49222620 (view UCSC Genome Browser custom track) |
| Alignm length: | 711 |
| Alignm identity: | 425 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 83, 17 |
| Conread position: | 35-718 |
| Cow position: | chr5:18400499-18399820 (view UCSC Genome Browser custom track) |
| Alignm length: | 709 |
| Alignm identity: | 448 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 165, 12 |
| Conread position: | 43-619 |
| Cow position: | chr5:50947829-50948430 (view UCSC Genome Browser custom track) |
| Alignm length: | 613 |
| Alignm identity: | 390 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 42, 127 |
| Conread position: | 43-718 |
| Cow position: | chr5:76096252-76096940 (view UCSC Genome Browser custom track) |
| Alignm length: | 711 |
| Alignm identity: | 452 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 42, 131 |
| Conread position: | 67-718 |
| Cow position: | chr5:4684582-4683920 (view UCSC Genome Browser custom track) |
| Alignm length: | 683 |
| Alignm identity: | 437 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 17, 134 |
| Conread position: | 110-718 |
| Cow position: | chr5:51744554-51745151 (view UCSC Genome Browser custom track) |
| Alignm length: | 635 |
| Alignm identity: | 409 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 93, 24 |
| Conread position: | 113-704 |
| Cow position: | chr5:73487793-73487186 (view UCSC Genome Browser custom track) |
| Alignm length: | 622 |
| Alignm identity: | 397 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 11, 22 |
| Conread position: | 113-718 |
| Cow position: | chr5:307139-306528 (view UCSC Genome Browser custom track) |
| Alignm length: | 632 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 179, 122 |
| Conread position: | 114-704 |
| Cow position: | chr5:2975066-2975662 (view UCSC Genome Browser custom track) |
| Alignm length: | 615 |
| Alignm identity: | 394 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 89, 20 |
| Conread position: | 142-704 |
| Cow position: | chr5:3965752-3966307 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 381 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 61, 53 |
| Conread position: | 145-722 |
| Cow position: | chr5:5666277-5665711 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 385 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 148, 49 |
| Conread position: | 179-602 |
| Cow position: | chr5:34697990-34698417 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 293 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 24, 16 |
| Conread position: | 180-702 |
| Cow position: | chr5:51369671-51369149 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 352 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 111, 72 |
| Conread position: | 188-721 |
| Cow position: | chr5:61030645-61031181 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 352 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 11, 31 |
| Conread position: | 244-722 |
| Cow position: | chr5:21918790-21919245 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 311 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 24, 59 |
| Conread position: | 253-718 |
| Cow position: | chr5:32952491-32952973 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 322 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 20, 51 |
| Conread position: | 254-712 |
| Cow position: | chr5:63265886-63266347 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 297 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 21, 92 |
| Conread position: | 255-696 |
| Cow position: | chr5:48533362-48533809 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 282 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 25, 66 |
| Conread position: | 256-718 |
| Cow position: | chr5:12642030-12641561 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 309 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 34, 65 |
| Conread position: | 256-718 |
| Cow position: | chr5:58191357-58190877 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 331 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 28, 48 |
| Conread position: | 284-718 |
| Cow position: | chr5:49118904-49118454 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 306 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 47, 38 |
| Conread position: | 361-670 |
| Cow position: | chr5:41065997-41065667 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 232 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 103, 15 |
| Conread position: | 361-704 |
| Cow position: | chr5:1340419-1340054 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 242 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 371-704 |
| Cow position: | chr5:55993930-55993582 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 237 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 93, 121 |
| Conread position: | 373-718 |
| Cow position: | chr5:49520231-49520593 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 252 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 102, 118 |
| Conread position: | 377-704 |
| Cow position: | chr5:14783861-14783520 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 384-718 |
| Cow position: | chr5:54787589-54787236 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 245 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 91, 40 |
| Conread position: | 400-700 |
| Cow position: | chr5:31327082-31327402 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 218 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 71, 11 |
| Conread position: | 413-627 |
| Cow position: | chr5:14344171-14343942 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 52, 30 |
| Conread position: | 458-712 |
| Cow position: | chr5:46791449-46791724 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 192 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 13, 268 |
| Conread position: | 458-718 |
| Cow position: | chr5:42506351-42506632 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 198 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 6, 34 |
| Conread position: | 480-722 |
| Cow position: | chr5:21144403-21144155 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 55, 101 |
Show alignments to all cow chromosomes.