Cow genome map
| Conread name: | Ova1-OVRM10074B08 |
| Conread position: | 1-357 |
| Cow position: | chr6:47625347-47625713 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 252 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 42, 216 |
| Conread position: | 1-702 |
| Cow position: | chr6:28170191-28170917 (view UCSC Genome Browser custom track) |
| Alignm length: | 740 |
| Alignm identity: | 463 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 39, 174 |
| Conread position: | 1-714 |
| Cow position: | chr6:28134199-28134951 (view UCSC Genome Browser custom track) |
| Alignm length: | 768 |
| Alignm identity: | 476 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 39, 124 |
| Conread position: | 1-718 |
| Cow position: | chr6:12626986-12627721 (view UCSC Genome Browser custom track) |
| Alignm length: | 757 |
| Alignm identity: | 480 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 241 |
| Conread position: | 1-718 |
| Cow position: | chr6:27170868-27171602 (view UCSC Genome Browser custom track) |
| Alignm length: | 756 |
| Alignm identity: | 488 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 206 |
| Conread position: | 1-718 |
| Cow position: | chr6:39910624-39911352 (view UCSC Genome Browser custom track) |
| Alignm length: | 753 |
| Alignm identity: | 490 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 203 |
| Conread position: | 1-718 |
| Cow position: | chr6:40276374-40277107 (view UCSC Genome Browser custom track) |
| Alignm length: | 753 |
| Alignm identity: | 489 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 202 |
| Conread position: | 1-718 |
| Cow position: | chr6:59617401-59618104 (view UCSC Genome Browser custom track) |
| Alignm length: | 749 |
| Alignm identity: | 476 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 42, 35 |
| Conread position: | 1-718 |
| Cow position: | chr6:65842901-65843630 (view UCSC Genome Browser custom track) |
| Alignm length: | 751 |
| Alignm identity: | 480 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 208 |
| Conread position: | 1-720 |
| Cow position: | chr6:28104572-28103839 (view UCSC Genome Browser custom track) |
| Alignm length: | 756 |
| Alignm identity: | 483 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 82 |
| Conread position: | 1-720 |
| Cow position: | chr6:28490279-28489548 (view UCSC Genome Browser custom track) |
| Alignm length: | 753 |
| Alignm identity: | 487 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 213 |
| Conread position: | 2-718 |
| Cow position: | chr6:12665029-12664298 (view UCSC Genome Browser custom track) |
| Alignm length: | 751 |
| Alignm identity: | 487 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 202 |
| Conread position: | 2-718 |
| Cow position: | chr6:51731382-51732099 (view UCSC Genome Browser custom track) |
| Alignm length: | 744 |
| Alignm identity: | 483 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 43 |
| Conread position: | 3-701 |
| Cow position: | chr6:1382029-1381338 (view UCSC Genome Browser custom track) |
| Alignm length: | 728 |
| Alignm identity: | 453 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 122, 39 |
| Conread position: | 4-533 |
| Cow position: | chr6:9843221-9843723 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 352 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 82, 9 |
| Conread position: | 5-718 |
| Cow position: | chr6:30273593-30272873 (view UCSC Genome Browser custom track) |
| Alignm length: | 744 |
| Alignm identity: | 483 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 40 |
| Conread position: | 11-695 |
| Cow position: | chr6:41228740-41229445 (view UCSC Genome Browser custom track) |
| Alignm length: | 725 |
| Alignm identity: | 470 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 21 |
| Conread position: | 11-718 |
| Cow position: | chr6:914931-915657 (view UCSC Genome Browser custom track) |
| Alignm length: | 749 |
| Alignm identity: | 486 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 139 |
| Conread position: | 11-718 |
| Cow position: | chr6:3888207-3887491 (view UCSC Genome Browser custom track) |
| Alignm length: | 742 |
| Alignm identity: | 480 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 24 |
| Conread position: | 15-701 |
| Cow position: | chr6:26669553-26668854 (view UCSC Genome Browser custom track) |
| Alignm length: | 720 |
| Alignm identity: | 466 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 32 |
| Conread position: | 23-718 |
| Cow position: | chr6:703532-704235 (view UCSC Genome Browser custom track) |
| Alignm length: | 728 |
| Alignm identity: | 479 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 22 |
| Conread position: | 23-718 |
| Cow position: | chr6:8203511-8204210 (view UCSC Genome Browser custom track) |
| Alignm length: | 721 |
| Alignm identity: | 460 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 22 |
| Conread position: | 23-718 |
| Cow position: | chr6:11723876-11723178 (view UCSC Genome Browser custom track) |
| Alignm length: | 720 |
| Alignm identity: | 467 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 26 |
| Conread position: | 23-718 |
| Cow position: | chr6:15139855-15139150 (view UCSC Genome Browser custom track) |
| Alignm length: | 727 |
| Alignm identity: | 470 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 22 |
| Conread position: | 23-718 |
| Cow position: | chr6:21835865-21835177 (view UCSC Genome Browser custom track) |
| Alignm length: | 720 |
| Alignm identity: | 457 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 62, 22 |
| Conread position: | 23-718 |
| Cow position: | chr6:34890804-34890107 (view UCSC Genome Browser custom track) |
| Alignm length: | 727 |
| Alignm identity: | 472 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 22 |
| Conread position: | 23-718 |
| Cow position: | chr6:35875386-35874693 (view UCSC Genome Browser custom track) |
| Alignm length: | 723 |
| Alignm identity: | 479 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 22 |
| Conread position: | 24-533 |
| Cow position: | chr6:15478496-15478989 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 328 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 24, 91 |
| Conread position: | 25-621 |
| Cow position: | chr6:24240724-24241322 (view UCSC Genome Browser custom track) |
| Alignm length: | 622 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 147 |
| Conread position: | 25-692 |
| Cow position: | chr6:52694342-52695026 (view UCSC Genome Browser custom track) |
| Alignm length: | 703 |
| Alignm identity: | 450 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 187 |
| Conread position: | 25-715 |
| Cow position: | chr6:66233122-66233820 (view UCSC Genome Browser custom track) |
| Alignm length: | 724 |
| Alignm identity: | 462 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 19, 140 |
| Conread position: | 25-718 |
| Cow position: | chr6:10679745-10680428 (view UCSC Genome Browser custom track) |
| Alignm length: | 718 |
| Alignm identity: | 452 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 19, 47 |
| Conread position: | 25-718 |
| Cow position: | chr6:13848389-13849093 (view UCSC Genome Browser custom track) |
| Alignm length: | 726 |
| Alignm identity: | 465 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 174 |
| Conread position: | 26-561 |
| Cow position: | chr6:15891877-15891355 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 348 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 58, 173 |
| Conread position: | 26-701 |
| Cow position: | chr6:40326737-40327426 (view UCSC Genome Browser custom track) |
| Alignm length: | 711 |
| Alignm identity: | 469 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 21 |
| Conread position: | 26-718 |
| Cow position: | chr6:2877364-2876661 (view UCSC Genome Browser custom track) |
| Alignm length: | 727 |
| Alignm identity: | 471 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 21 |
| Conread position: | 26-718 |
| Cow position: | chr6:44149228-44148527 (view UCSC Genome Browser custom track) |
| Alignm length: | 723 |
| Alignm identity: | 469 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 17 |
| Conread position: | 26-718 |
| Cow position: | chr6:45587271-45587957 (view UCSC Genome Browser custom track) |
| Alignm length: | 717 |
| Alignm identity: | 473 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 21 |
| Conread position: | 28-722 |
| Cow position: | chr6:50529791-50530462 (view UCSC Genome Browser custom track) |
| Alignm length: | 710 |
| Alignm identity: | 443 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 57, 15 |
| Conread position: | 29-701 |
| Cow position: | chr6:28703388-28702702 (view UCSC Genome Browser custom track) |
| Alignm length: | 706 |
| Alignm identity: | 455 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 172 |
| Conread position: | 30-718 |
| Cow position: | chr6:330140-329442 (view UCSC Genome Browser custom track) |
| Alignm length: | 720 |
| Alignm identity: | 465 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 17 |
| Conread position: | 30-718 |
| Cow position: | chr6:3150558-3151251 (view UCSC Genome Browser custom track) |
| Alignm length: | 714 |
| Alignm identity: | 455 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 17 |
| Conread position: | 30-718 |
| Cow position: | chr6:43619047-43619754 (view UCSC Genome Browser custom track) |
| Alignm length: | 729 |
| Alignm identity: | 468 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 55, 17 |
| Conread position: | 39-700 |
| Cow position: | chr6:31301655-31302318 (view UCSC Genome Browser custom track) |
| Alignm length: | 685 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 35 |
| Conread position: | 42-718 |
| Cow position: | chr6:5948445-5947761 (view UCSC Genome Browser custom track) |
| Alignm length: | 701 |
| Alignm identity: | 454 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 42 |
| Conread position: | 43-718 |
| Cow position: | chr6:5749260-5749949 (view UCSC Genome Browser custom track) |
| Alignm length: | 708 |
| Alignm identity: | 461 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 158 |
| Conread position: | 43-718 |
| Cow position: | chr6:8759960-8759270 (view UCSC Genome Browser custom track) |
| Alignm length: | 706 |
| Alignm identity: | 455 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 156 |
| Conread position: | 43-718 |
| Cow position: | chr6:13310043-13309363 (view UCSC Genome Browser custom track) |
| Alignm length: | 709 |
| Alignm identity: | 459 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 158 |
| Conread position: | 61-704 |
| Cow position: | chr6:11165461-11164816 (view UCSC Genome Browser custom track) |
| Alignm length: | 670 |
| Alignm identity: | 413 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 134, 50 |
| Conread position: | 134-694 |
| Cow position: | chr6:65907355-65906790 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 368 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 69, 61 |
| Conread position: | 136-627 |
| Cow position: | chr6:6081467-6080992 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 337 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 8, 111 |
| Conread position: | 137-718 |
| Cow position: | chr6:27375486-27374904 (view UCSC Genome Browser custom track) |
| Alignm length: | 602 |
| Alignm identity: | 374 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 147, 66 |
| Conread position: | 142-718 |
| Cow position: | chr6:17596855-17596272 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 53 |
| Conread position: | 226-636 |
| Cow position: | chr6:35939514-35939935 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 294 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 81, 139 |
| Conread position: | 249-629 |
| Cow position: | chr6:64791029-64791406 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 262 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 29, 58 |
| Conread position: | 250-718 |
| Cow position: | chr6:15641698-15641212 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 333 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 29, 114 |
| Conread position: | 256-718 |
| Cow position: | chr6:14390471-14390952 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 116 |
| Conread position: | 256-718 |
| Cow position: | chr6:36528740-36529218 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 67 |
| Conread position: | 257-671 |
| Cow position: | chr6:1098506-1098084 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 275 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 21, 102 |
| Conread position: | 257-718 |
| Cow position: | chr6:28187294-28186815 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 47 |
| Conread position: | 259-702 |
| Cow position: | chr6:34275226-34274776 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 303 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 19, 101 |
| Conread position: | 259-710 |
| Cow position: | chr6:59594451-59594914 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 306 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 21, 104 |
| Conread position: | 328-673 |
| Cow position: | chr6:14081164-14081530 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 244 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 136, 42 |
| Conread position: | 361-718 |
| Cow position: | chr6:39023212-39022839 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 259 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 51, 77 |
| Conread position: | 365-700 |
| Cow position: | chr6:28642888-28642532 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 252 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 99, 11 |
| Conread position: | 372-718 |
| Cow position: | chr6:2580077-2580438 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 238 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 103, 77 |
| Conread position: | 380-718 |
| Cow position: | chr6:43431694-43431335 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 256 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 84, 112 |
| Conread position: | 380-718 |
| Cow position: | chr6:62578535-62578175 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 256 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 13, 115 |
| Conread position: | 380-718 |
| Cow position: | chr6:62663381-62663736 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 245 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 84, 342 |
| Conread position: | 380-718 |
| Cow position: | chr6:68028811-68029172 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 251 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 84, 112 |
| Conread position: | 384-718 |
| Cow position: | chr6:2556310-2556664 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 250 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 80, 14 |
| Conread position: | 389-717 |
| Cow position: | chr6:64814332-64813993 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 98, 56 |
| Conread position: | 402-718 |
| Cow position: | chr6:65659957-65660286 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 225 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 40, 73 |
| Conread position: | 411-722 |
| Cow position: | chr6:44412424-44412112 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 215 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 72, 42 |
| Conread position: | 413-718 |
| Cow position: | chr6:50718369-50718695 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 227 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 51, 81 |
| Conread position: | 424-718 |
| Cow position: | chr6:13978460-13978774 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 219 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 40, 11 |
| Conread position: | 425-701 |
| Cow position: | chr6:18513263-18513562 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 39, 67 |
| Conread position: | 429-718 |
| Cow position: | chr6:25216019-25216321 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 50, 30 |
| Conread position: | 440-718 |
| Cow position: | chr6:2376429-2376723 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 24, 54 |
| Conread position: | 442-718 |
| Cow position: | chr6:46296014-46296311 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 22, 50 |
| Conread position: | 453-718 |
| Cow position: | chr6:20352360-20352074 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 11, 39 |
| Conread position: | 469-715 |
| Cow position: | chr6:16051499-16051236 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 187 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 66, 21 |
Show alignments to all cow chromosomes.