Cow genome map
| Conread name: | Ova1-OVRM10075A05 |
| Conread position: | 37-285 |
| Cow position: | chr12:403631-403889 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 178 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 38, 247 |
| Conread position: | 53-293 |
| Cow position: | chr12:11583935-11583701 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 177 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 16, 44 |
| Conread position: | 56-282 |
| Cow position: | chr12:38002340-38002125 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 166 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 10, 38 |
| Conread position: | 60-286 |
| Cow position: | chr12:32392127-32391916 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 73-182 |
| Cow position: | chr12:44211339-44211234 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 94 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 74-283 |
| Cow position: | chr12:39382808-39382596 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 159, 0 |
| Conread position: | 76-286 |
| Cow position: | chr12:15163343-15163137 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 28, 103 |
| Conread position: | 76-353 |
| Cow position: | chr12:18523765-18523500 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 157, 17 |
| Conread position: | 78-283 |
| Cow position: | chr12:45820150-45820365 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 100, 15 |
| Conread position: | 79-224 |
| Cow position: | chr12:23908060-23908206 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 45, 31 |
| Conread position: | 79-276 |
| Cow position: | chr12:23764675-23764492 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 79-276 |
| Cow position: | chr12:36012435-36012622 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 79-285 |
| Cow position: | chr12:7110393-7110196 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 20, 119 |
| Conread position: | 80-286 |
| Cow position: | chr12:4962832-4962632 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 153, 33 |
| Conread position: | 80-286 |
| Cow position: | chr12:23912805-23913013 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 81, 13 |
| Conread position: | 80-286 |
| Cow position: | chr12:27037240-27037452 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 162 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 97, 20 |
| Conread position: | 80-287 |
| Cow position: | chr12:34165776-34165580 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 80-310 |
| Cow position: | chr12:29018102-29017878 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 130, 13 |
| Conread position: | 80-330 |
| Cow position: | chr12:43551039-43551267 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 81-218 |
| Cow position: | chr12:7515052-7514919 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 131, 26 |
| Conread position: | 81-303 |
| Cow position: | chr12:36993916-36994134 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 108, 30 |
| Conread position: | 81-321 |
| Cow position: | chr12:25456598-25456372 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 175 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 11, 22 |
| Conread position: | 82-285 |
| Cow position: | chr12:41213997-41214186 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 156, 12 |
| Conread position: | 82-286 |
| Cow position: | chr12:5543593-5543798 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 156 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 114, 13 |
| Conread position: | 83-286 |
| Cow position: | chr12:31960088-31959877 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 153 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 85-287 |
| Cow position: | chr12:15832381-15832190 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 5, 24 |
| Conread position: | 87-274 |
| Cow position: | chr12:25304697-25304889 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 140 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 23, 46 |
| Conread position: | 88-266 |
| Cow position: | chr12:34473438-34473607 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 88-283 |
| Cow position: | chr12:29770379-29770578 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 88-283 |
| Cow position: | chr12:44622533-44622349 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 144 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 89-286 |
| Cow position: | chr12:24663290-24663112 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 89-288 |
| Cow position: | chr12:3879784-3879984 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 155 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 46, 19 |
| Conread position: | 90-192 |
| Cow position: | chr12:6480815-6480710 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 91 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 96-277 |
| Cow position: | chr12:1848310-1848490 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 114, 16 |
| Conread position: | 96-321 |
| Cow position: | chr12:25445099-25444878 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 161 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 112, 12 |
| Conread position: | 98-283 |
| Cow position: | chr12:6225961-6226145 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 85, 13 |
| Conread position: | 98-284 |
| Cow position: | chr12:24604731-24604909 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 29, 12 |
| Conread position: | 102-255 |
| Cow position: | chr12:3598552-3598702 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 104-284 |
| Cow position: | chr12:3569417-3569228 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 83, 146 |
| Conread position: | 105-287 |
| Cow position: | chr12:45723501-45723309 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 108-285 |
| Cow position: | chr12:42698078-42698247 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 15, 59 |
| Conread position: | 109-282 |
| Cow position: | chr12:24186325-24186489 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 131 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 110-288 |
| Cow position: | chr12:32051671-32051506 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 130 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 111-251 |
| Cow position: | chr12:5135831-5135679 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 111-265 |
| Cow position: | chr12:11950307-11950156 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 111-265 |
| Cow position: | chr12:23621824-23621667 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 126 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 111-275 |
| Cow position: | chr12:4789897-4790065 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 133 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 67, 8 |
| Conread position: | 111-285 |
| Cow position: | chr12:45167858-45168020 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 111-286 |
| Cow position: | chr12:32419195-32419376 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 136 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 54, 136 |
| Conread position: | 111-286 |
| Cow position: | chr12:33319489-33319670 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 144 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 111-286 |
| Cow position: | chr12:34148189-34148363 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 125, 88 |
| Conread position: | 111-288 |
| Cow position: | chr12:34275797-34275614 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 97, 127 |
| Conread position: | 111-291 |
| Cow position: | chr12:29200228-29200400 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 122, 34 |
| Conread position: | 111-311 |
| Cow position: | chr12:27430670-27430480 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 33, 54 |
| Conread position: | 111-321 |
| Cow position: | chr12:7000433-7000639 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 111-324 |
| Cow position: | chr12:4014272-4014470 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 159 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 112-283 |
| Cow position: | chr12:46463902-46464066 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 112-286 |
| Cow position: | chr12:18021027-18020856 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 113-286 |
| Cow position: | chr12:6720496-6720326 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 113-286 |
| Cow position: | chr12:46120668-46120834 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 113-321 |
| Cow position: | chr12:27572061-27572276 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 168 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 54, 183 |
| Conread position: | 119-256 |
| Cow position: | chr12:45028514-45028375 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 130-276 |
| Cow position: | chr12:34171580-34171430 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 131-286 |
| Cow position: | chr12:42143310-42143157 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 145-286 |
| Cow position: | chr12:1767048-1766907 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 106 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 43, 31 |
| Conread position: | 166-286 |
| Cow position: | chr12:32715164-32715043 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 48, 113 |
| Conread position: | 166-287 |
| Cow position: | chr12:30226814-30226936 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 94 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 183-310 |
| Cow position: | chr12:25528459-25528586 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 121, 105 |
| Conread position: | 190-286 |
| Cow position: | chr12:14986842-14986747 (view UCSC Genome Browser custom track) |
| Alignm length: | 97 |
| Alignm identity: | 82 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 192-287 |
| Cow position: | chr12:29731406-29731311 (view UCSC Genome Browser custom track) |
| Alignm length: | 96 |
| Alignm identity: | 80 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.