Cow genome map
| Conread name: | Ova1-OVRM10075A05 |
| Conread position: | 10-276 |
| Cow position: | chr17:7658575-7658300 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 16, 27 |
| Conread position: | 46-186 |
| Cow position: | chr17:21718707-21718843 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 52, 18 |
| Conread position: | 52-286 |
| Cow position: | chr17:21206182-21206426 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 194 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 8, 50 |
| Conread position: | 67-276 |
| Cow position: | chr17:39768346-39768128 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 95, 28 |
| Conread position: | 74-287 |
| Cow position: | chr17:25490770-25490985 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 11, 97 |
| Conread position: | 75-288 |
| Cow position: | chr17:28814204-28814418 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 100, 57 |
| Conread position: | 77-291 |
| Cow position: | chr17:7137261-7137052 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 159 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 150, 11 |
| Conread position: | 78-256 |
| Cow position: | chr17:21604714-21604534 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 119, 34 |
| Conread position: | 79-275 |
| Cow position: | chr17:15340470-15340664 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 92, 13 |
| Conread position: | 79-286 |
| Cow position: | chr17:24554278-24554073 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 96, 21 |
| Conread position: | 79-288 |
| Cow position: | chr17:27613493-27613294 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 34, 21 |
| Conread position: | 80-220 |
| Cow position: | chr17:41912872-41912736 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 80-263 |
| Cow position: | chr17:37128760-37128940 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 8, 126 |
| Conread position: | 80-284 |
| Cow position: | chr17:22016803-22017005 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 32, 50 |
| Conread position: | 80-284 |
| Cow position: | chr17:42697580-42697373 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 90, 13 |
| Conread position: | 80-284 |
| Cow position: | chr17:42744746-42744535 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 107, 13 |
| Conread position: | 80-285 |
| Cow position: | chr17:24895330-24895151 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 80-286 |
| Cow position: | chr17:9117936-9117721 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 117, 20 |
| Conread position: | 80-286 |
| Cow position: | chr17:32138159-32138347 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 32, 13 |
| Conread position: | 80-287 |
| Cow position: | chr17:3097372-3097580 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 23, 128 |
| Conread position: | 80-288 |
| Cow position: | chr17:15299588-15299804 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 30, 165 |
| Conread position: | 80-321 |
| Cow position: | chr17:26807179-26806940 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 15, 26 |
| Conread position: | 81-286 |
| Cow position: | chr17:25557672-25557881 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 119, 14 |
| Conread position: | 81-286 |
| Cow position: | chr17:40332033-40331841 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 81-318 |
| Cow position: | chr17:21372773-21372538 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 10, 127 |
| Conread position: | 83-236 |
| Cow position: | chr17:3782435-3782292 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 83-266 |
| Cow position: | chr17:32192407-32192587 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 138 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 125, 12 |
| Conread position: | 83-300 |
| Cow position: | chr17:25193237-25193464 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 88-275 |
| Cow position: | chr17:21325598-21325420 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 22, 86 |
| Conread position: | 88-286 |
| Cow position: | chr17:9713071-9713265 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 159 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 14, 25 |
| Conread position: | 88-286 |
| Cow position: | chr17:21466005-21466186 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 149 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 22, 7 |
| Conread position: | 88-286 |
| Cow position: | chr17:21788391-21788582 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 23, 77 |
| Conread position: | 88-299 |
| Cow position: | chr17:21298714-21298508 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 153 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 89-286 |
| Cow position: | chr17:3067588-3067782 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 74, 26 |
| Conread position: | 89-286 |
| Cow position: | chr17:31480783-31480961 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 91-193 |
| Cow position: | chr17:23736971-23736872 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 86 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 92-285 |
| Cow position: | chr17:10510190-10510394 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 79, 16 |
| Conread position: | 93-288 |
| Cow position: | chr17:39715435-39715235 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 17, 43 |
| Conread position: | 94-320 |
| Cow position: | chr17:31585682-31585460 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 78, 18 |
| Conread position: | 95-222 |
| Cow position: | chr17:10234563-10234686 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 99 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 95-306 |
| Cow position: | chr17:4286302-4286101 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 15, 38 |
| Conread position: | 101-321 |
| Cow position: | chr17:21268565-21268340 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 11, 193 |
| Conread position: | 108-286 |
| Cow position: | chr17:6082770-6082587 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 73, 23 |
| Conread position: | 109-276 |
| Cow position: | chr17:9306049-9306218 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 122 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 94, 125 |
| Conread position: | 109-300 |
| Cow position: | chr17:9487550-9487356 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 56, 184 |
| Conread position: | 110-286 |
| Cow position: | chr17:5685867-5686038 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 161, 82 |
| Conread position: | 111-205 |
| Cow position: | chr17:1093062-1093156 (view UCSC Genome Browser custom track) |
| Alignm length: | 95 |
| Alignm identity: | 82 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 111-257 |
| Cow position: | chr17:6529782-6529636 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 24, 28 |
| Conread position: | 111-274 |
| Cow position: | chr17:4472284-4472446 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 127 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 122, 97 |
| Conread position: | 111-285 |
| Cow position: | chr17:3389063-3388901 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 111-286 |
| Cow position: | chr17:20856288-20856464 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 111-286 |
| Cow position: | chr17:30737680-30737520 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 111-287 |
| Cow position: | chr17:21757890-21758065 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 66, 20 |
| Conread position: | 111-302 |
| Cow position: | chr17:15702607-15702418 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 139 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 166, 0 |
| Conread position: | 111-321 |
| Cow position: | chr17:27639799-27640005 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 117, 70 |
| Conread position: | 111-331 |
| Cow position: | chr17:969139-968914 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 163 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 67, 168 |
| Conread position: | 112-284 |
| Cow position: | chr17:5720126-5719950 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 62, 33 |
| Conread position: | 113-286 |
| Cow position: | chr17:22074251-22074421 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 115-313 |
| Cow position: | chr17:21335326-21335510 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 189, 57 |
| Conread position: | 116-291 |
| Cow position: | chr17:3291314-3291145 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 120-288 |
| Cow position: | chr17:37430261-37430430 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 128 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 78, 11 |
| Conread position: | 136-286 |
| Cow position: | chr17:35541946-35542093 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 90, 17 |
| Conread position: | 138-288 |
| Cow position: | chr17:15215859-15216012 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 159-320 |
| Cow position: | chr17:5743087-5743243 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 129, 0 |
| Conread position: | 168-273 |
| Cow position: | chr17:5053867-5053762 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 86 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 190-284 |
| Cow position: | chr17:32989649-32989555 (view UCSC Genome Browser custom track) |
| Alignm length: | 95 |
| Alignm identity: | 80 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 190-284 |
| Cow position: | chr17:32993451-32993545 (view UCSC Genome Browser custom track) |
| Alignm length: | 95 |
| Alignm identity: | 80 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 190-286 |
| Cow position: | chr17:17035122-17035026 (view UCSC Genome Browser custom track) |
| Alignm length: | 97 |
| Alignm identity: | 80 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 190-286 |
| Cow position: | chr17:25473107-25473203 (view UCSC Genome Browser custom track) |
| Alignm length: | 97 |
| Alignm identity: | 80 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.