Cow genome map
| Conread name: | Ova1-OVRM10075A05 |
| Conread position: | 35-205 |
| Cow position: | chr18:43020105-43020270 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 42-192 |
| Cow position: | chr18:4932470-4932327 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 60-286 |
| Cow position: | chr18:18320348-18320557 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 63-274 |
| Cow position: | chr18:49543827-49543605 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 43, 189 |
| Conread position: | 68-286 |
| Cow position: | chr18:16379139-16378926 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 155 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 16, 50 |
| Conread position: | 74-286 |
| Cow position: | chr18:5701453-5701251 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 75-216 |
| Cow position: | chr18:30278174-30278318 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 18, 39 |
| Conread position: | 80-265 |
| Cow position: | chr18:52402784-52402953 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 80-271 |
| Cow position: | chr18:29402387-29402206 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 81-286 |
| Cow position: | chr18:1954400-1954586 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 81-286 |
| Cow position: | chr18:3044644-3044445 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 29, 105 |
| Conread position: | 83-286 |
| Cow position: | chr18:23921515-23921699 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 83-287 |
| Cow position: | chr18:4088672-4088464 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 165, 24 |
| Conread position: | 85-193 |
| Cow position: | chr18:40356763-40356871 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 93 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 25, 8 |
| Conread position: | 85-286 |
| Cow position: | chr18:37023358-37023547 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 6, 24 |
| Conread position: | 86-260 |
| Cow position: | chr18:39190292-39190472 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 122, 26 |
| Conread position: | 86-286 |
| Cow position: | chr18:42978455-42978642 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 87-286 |
| Cow position: | chr18:36230530-36230723 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 155 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 87-286 |
| Cow position: | chr18:39875065-39875256 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 148 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 25, 88 |
| Conread position: | 88-283 |
| Cow position: | chr18:51178538-51178722 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 88-286 |
| Cow position: | chr18:11672231-11672046 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 88-287 |
| Cow position: | chr18:39267289-39267483 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 88-409 |
| Cow position: | chr18:7214738-7214417 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 223 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 24, 148 |
| Conread position: | 89-206 |
| Cow position: | chr18:40476004-40476118 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 89-273 |
| Cow position: | chr18:8390385-8390206 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 148 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 89-286 |
| Cow position: | chr18:1549366-1549546 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 146 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 90-302 |
| Cow position: | chr18:24343036-24342831 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 49, 18 |
| Conread position: | 93-205 |
| Cow position: | chr18:19620361-19620252 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 91 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 93-286 |
| Cow position: | chr18:12270682-12270504 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 93-286 |
| Cow position: | chr18:23163063-23162889 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 95-321 |
| Cow position: | chr18:4466797-4467017 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 137, 14 |
| Conread position: | 96-284 |
| Cow position: | chr18:47963811-47963628 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 16, 71 |
| Conread position: | 98-285 |
| Cow position: | chr18:42747764-42747592 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 102-286 |
| Cow position: | chr18:53039015-53038833 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 8, 80 |
| Conread position: | 108-258 |
| Cow position: | chr18:24705609-24705462 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 108-283 |
| Cow position: | chr18:21081717-21081885 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 13, 74 |
| Conread position: | 109-283 |
| Cow position: | chr18:35454497-35454663 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 122, 25 |
| Conread position: | 109-286 |
| Cow position: | chr18:14091158-14090984 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 81, 131 |
| Conread position: | 109-319 |
| Cow position: | chr18:33008241-33008038 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 175, 33 |
| Conread position: | 111-272 |
| Cow position: | chr18:19882002-19882160 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 111-276 |
| Cow position: | chr18:30921387-30921231 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 111-286 |
| Cow position: | chr18:9177081-9176902 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 112, 20 |
| Conread position: | 111-286 |
| Cow position: | chr18:50612361-50612528 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 111-302 |
| Cow position: | chr18:19896269-19896463 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 50, 170 |
| Conread position: | 111-308 |
| Cow position: | chr18:25647063-25647268 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 56, 165 |
| Conread position: | 111-311 |
| Cow position: | chr18:35693030-35692835 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 122, 69 |
| Conread position: | 111-325 |
| Cow position: | chr18:35077436-35077215 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 88, 18 |
| Conread position: | 112-220 |
| Cow position: | chr18:45079110-45079218 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 90 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 113-284 |
| Cow position: | chr18:3158430-3158592 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 129, 83 |
| Conread position: | 113-284 |
| Cow position: | chr18:36459105-36458935 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 71, 12 |
| Conread position: | 113-286 |
| Cow position: | chr18:51867363-51867543 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 70, 172 |
| Conread position: | 114-265 |
| Cow position: | chr18:35478679-35478531 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 114-292 |
| Cow position: | chr18:52245375-52245205 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 7, 52 |
| Conread position: | 118-285 |
| Cow position: | chr18:4534858-4535019 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 118-286 |
| Cow position: | chr18:55736877-55736707 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 132-285 |
| Cow position: | chr18:37810184-37810329 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 135-295 |
| Cow position: | chr18:51392493-51392649 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 146-302 |
| Cow position: | chr18:4796501-4796345 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 18, 37 |
| Conread position: | 147-308 |
| Cow position: | chr18:39022404-39022237 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 72, 147 |
| Conread position: | 159-259 |
| Cow position: | chr18:26343557-26343656 (view UCSC Genome Browser custom track) |
| Alignm length: | 101 |
| Alignm identity: | 87 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 161-286 |
| Cow position: | chr18:28923714-28923844 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 166-286 |
| Cow position: | chr18:871786-871664 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 95 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 166-286 |
| Cow position: | chr18:42715194-42715311 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 104 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 166-286 |
| Cow position: | chr18:49324315-49324433 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 169-285 |
| Cow position: | chr18:23027052-23027165 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 93 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 177-285 |
| Cow position: | chr18:2776783-2776891 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 87 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 177-286 |
| Cow position: | chr18:2773280-2773389 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 90 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 181-275 |
| Cow position: | chr18:48633881-48633790 (view UCSC Genome Browser custom track) |
| Alignm length: | 95 |
| Alignm identity: | 81 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 184-276 |
| Cow position: | chr18:37800084-37799990 (view UCSC Genome Browser custom track) |
| Alignm length: | 95 |
| Alignm identity: | 82 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 189-286 |
| Cow position: | chr18:35535046-35535143 (view UCSC Genome Browser custom track) |
| Alignm length: | 98 |
| Alignm identity: | 81 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 190-286 |
| Cow position: | chr18:50004606-50004702 (view UCSC Genome Browser custom track) |
| Alignm length: | 97 |
| Alignm identity: | 82 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.