Cow genome map
| Conread name: | Ova1-OVRM10075A05 |
| Conread position: | 47-286 |
| Cow position: | chr21:652249-652477 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 174 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 60-274 |
| Cow position: | chr21:23149628-23149834 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 150 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 50, 112 |
| Conread position: | 67-276 |
| Cow position: | chr21:28924416-28924219 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 8, 27 |
| Conread position: | 68-285 |
| Cow position: | chr21:33351070-33350842 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 6, 69 |
| Conread position: | 69-188 |
| Cow position: | chr21:15867595-15867476 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 93 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 70-290 |
| Cow position: | chr21:34026-33816 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 72-314 |
| Cow position: | chr21:38722516-38722279 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 122, 32 |
| Conread position: | 78-295 |
| Cow position: | chr21:27625016-27624790 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 60, 37 |
| Conread position: | 79-276 |
| Cow position: | chr21:30980282-30980468 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 79-286 |
| Cow position: | chr21:42562930-42562727 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 128, 33 |
| Conread position: | 79-324 |
| Cow position: | chr21:3400534-3400764 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 59, 14 |
| Conread position: | 80-274 |
| Cow position: | chr21:14674600-14674414 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 146 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 15, 57 |
| Conread position: | 80-276 |
| Cow position: | chr21:5486218-5486401 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 80-286 |
| Cow position: | chr21:5392220-5392435 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 155 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 80-286 |
| Cow position: | chr21:32297226-32297419 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 155 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 12, 34 |
| Conread position: | 80-286 |
| Cow position: | chr21:41974089-41974278 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 80-286 |
| Cow position: | chr21:48334504-48334692 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 159 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 22, 29 |
| Conread position: | 81-286 |
| Cow position: | chr21:30249893-30250104 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 29, 147 |
| Conread position: | 82-265 |
| Cow position: | chr21:30255976-30256153 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 138 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 30, 18 |
| Conread position: | 83-286 |
| Cow position: | chr21:47451460-47451269 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 85-286 |
| Cow position: | chr21:42841309-42841497 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 6, 32 |
| Conread position: | 86-286 |
| Cow position: | chr21:36682610-36682425 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 87-236 |
| Cow position: | chr21:17615798-17615944 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 90, 15 |
| Conread position: | 88-205 |
| Cow position: | chr21:10717174-10717288 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 93 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 88-278 |
| Cow position: | chr21:44825600-44825778 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 88-286 |
| Cow position: | chr21:13365637-13365442 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 88-286 |
| Cow position: | chr21:31090143-31090336 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 169, 24 |
| Conread position: | 88-321 |
| Cow position: | chr21:10515109-10514872 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 115, 14 |
| Conread position: | 89-286 |
| Cow position: | chr21:20260026-20260219 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 74, 23 |
| Conread position: | 95-286 |
| Cow position: | chr21:5962073-5961877 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 156 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 100, 13 |
| Conread position: | 95-315 |
| Cow position: | chr21:3359118-3359331 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 189, 17 |
| Conread position: | 98-284 |
| Cow position: | chr21:40305232-40305045 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 70, 13 |
| Conread position: | 107-282 |
| Cow position: | chr21:41450652-41450486 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 165, 59 |
| Conread position: | 110-266 |
| Cow position: | chr21:19211255-19211100 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 111-207 |
| Cow position: | chr21:32813015-32812919 (view UCSC Genome Browser custom track) |
| Alignm length: | 97 |
| Alignm identity: | 80 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 111-212 |
| Cow position: | chr21:45636936-45637037 (view UCSC Genome Browser custom track) |
| Alignm length: | 102 |
| Alignm identity: | 83 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 111-286 |
| Cow position: | chr21:25159445-25159271 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 31, 57 |
| Conread position: | 111-286 |
| Cow position: | chr21:26245182-26245014 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 122, 20 |
| Conread position: | 111-286 |
| Cow position: | chr21:35569087-35569264 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 111-286 |
| Cow position: | chr21:41956949-41957112 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 111-286 |
| Cow position: | chr21:42384788-42384608 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 32, 36 |
| Conread position: | 111-286 |
| Cow position: | chr21:46264443-46264270 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 111-287 |
| Cow position: | chr21:16927828-16928007 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 29, 101 |
| Conread position: | 111-287 |
| Cow position: | chr21:27568907-27569074 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 111-287 |
| Cow position: | chr21:29014285-29014460 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 99, 78 |
| Conread position: | 111-291 |
| Cow position: | chr21:13164131-13163955 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 111-302 |
| Cow position: | chr21:36795876-36795688 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 111-321 |
| Cow position: | chr21:36910203-36910001 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 112-273 |
| Cow position: | chr21:28237448-28237595 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 112-286 |
| Cow position: | chr21:11057608-11057781 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 112-286 |
| Cow position: | chr21:11363949-11363767 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 58, 19 |
| Conread position: | 112-288 |
| Cow position: | chr21:8978720-8978545 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 114, 69 |
| Conread position: | 112-291 |
| Cow position: | chr21:48478622-48478802 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 94, 132 |
| Conread position: | 112-321 |
| Cow position: | chr21:14228009-14228214 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 114-301 |
| Cow position: | chr21:42958480-42958662 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 132-341 |
| Cow position: | chr21:34776873-34777075 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 154, 52 |
| Conread position: | 157-286 |
| Cow position: | chr21:19359946-19360076 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 159-276 |
| Cow position: | chr21:7581678-7581795 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 91 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 159-276 |
| Cow position: | chr21:40573829-40573949 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 159-284 |
| Cow position: | chr21:734816-734692 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 101 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 159-287 |
| Cow position: | chr21:5149427-5149299 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 96 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 165-286 |
| Cow position: | chr21:18800313-18800434 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 94 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 177-286 |
| Cow position: | chr21:27744233-27744125 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 88 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 177-286 |
| Cow position: | chr21:27810596-27810487 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 87 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 181-286 |
| Cow position: | chr21:5341888-5341994 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 88 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 185-291 |
| Cow position: | chr21:29069125-29069231 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 88 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 190-286 |
| Cow position: | chr21:643520-643424 (view UCSC Genome Browser custom track) |
| Alignm length: | 97 |
| Alignm identity: | 82 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 196-287 |
| Cow position: | chr21:30205183-30205274 (view UCSC Genome Browser custom track) |
| Alignm length: | 92 |
| Alignm identity: | 78 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.