Cow genome map
| Conread name: | Ova1-OVRM10075A05 |
| Conread position: | 57-286 |
| Cow position: | chr27:16088505-16088724 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 23, 55 |
| Conread position: | 58-205 |
| Cow position: | chr27:342339-342488 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 17, 59 |
| Conread position: | 67-290 |
| Cow position: | chr27:17919029-17918793 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 68-285 |
| Cow position: | chr27:18767356-18767144 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 163 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 13, 46 |
| Conread position: | 70-286 |
| Cow position: | chr27:15214925-15215150 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 134, 18 |
| Conread position: | 75-193 |
| Cow position: | chr27:2685173-2685289 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 75-218 |
| Cow position: | chr27:154159-154300 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 75-282 |
| Cow position: | chr27:18923128-18922916 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 77-286 |
| Cow position: | chr27:19823043-19823262 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 77-287 |
| Cow position: | chr27:20628799-20628990 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 155 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 55, 22 |
| Conread position: | 78-286 |
| Cow position: | chr27:28290582-28290785 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 160 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 79-302 |
| Cow position: | chr27:1789449-1789203 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 10, 233 |
| Conread position: | 80-286 |
| Cow position: | chr27:4720386-4720192 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 158 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 12, 23 |
| Conread position: | 80-288 |
| Cow position: | chr27:6014909-6015124 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 122, 22 |
| Conread position: | 80-291 |
| Cow position: | chr27:30988509-30988721 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 30, 197 |
| Conread position: | 80-312 |
| Cow position: | chr27:20485782-20485999 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 32, 20 |
| Conread position: | 81-226 |
| Cow position: | chr27:22708738-22708876 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 109 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 82-286 |
| Cow position: | chr27:9697357-9697573 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 92, 20 |
| Conread position: | 85-205 |
| Cow position: | chr27:19924530-19924654 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 88-286 |
| Cow position: | chr27:7212982-7212793 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 157 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 88-286 |
| Cow position: | chr27:27136790-27136600 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 145 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 129, 27 |
| Conread position: | 88-286 |
| Cow position: | chr27:27270825-27270622 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 144 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 22, 127 |
| Conread position: | 89-284 |
| Cow position: | chr27:26413529-26413336 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 98, 23 |
| Conread position: | 89-300 |
| Cow position: | chr27:20336836-20337035 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 149 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 90-274 |
| Cow position: | chr27:26321422-26321611 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 141 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 12, 23 |
| Conread position: | 92-286 |
| Cow position: | chr27:16589972-16589782 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 93-286 |
| Cow position: | chr27:7448326-7448141 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 142 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 115, 17 |
| Conread position: | 94-265 |
| Cow position: | chr27:20758297-20758131 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 95-206 |
| Cow position: | chr27:11466761-11466653 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 94 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 95-286 |
| Cow position: | chr27:23748810-23748625 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 120, 17 |
| Conread position: | 95-290 |
| Cow position: | chr27:23489120-23488936 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 138 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 97-312 |
| Cow position: | chr27:20275305-20275528 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 86, 201 |
| Conread position: | 109-285 |
| Cow position: | chr27:15378715-15378556 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 129, 18 |
| Conread position: | 111-264 |
| Cow position: | chr27:30803951-30804100 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 111-276 |
| Cow position: | chr27:28467701-28467540 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 122 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 111, 90 |
| Conread position: | 111-286 |
| Cow position: | chr27:19717666-19717835 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 111-286 |
| Cow position: | chr27:30489660-30489490 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 26, 91 |
| Conread position: | 111-287 |
| Cow position: | chr27:237020-237190 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 111-291 |
| Cow position: | chr27:27641268-27641088 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 27, 119 |
| Conread position: | 111-299 |
| Cow position: | chr27:5574009-5573819 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 130 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 111-317 |
| Cow position: | chr27:815102-815310 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 149 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 103, 182 |
| Conread position: | 111-319 |
| Cow position: | chr27:28541367-28541160 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 68, 61 |
| Conread position: | 111-321 |
| Cow position: | chr27:7731506-7731303 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 112-283 |
| Cow position: | chr27:28245550-28245720 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 123 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 121, 82 |
| Conread position: | 112-315 |
| Cow position: | chr27:22153606-22153807 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 40, 100 |
| Conread position: | 113-286 |
| Cow position: | chr27:29658969-29658795 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 49, 143 |
| Conread position: | 115-259 |
| Cow position: | chr27:17927383-17927241 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 106 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 118-302 |
| Cow position: | chr27:22455018-22454840 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 111, 50 |
| Conread position: | 119-317 |
| Cow position: | chr27:28039079-28038894 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 123-283 |
| Cow position: | chr27:6674048-6674198 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 130-285 |
| Cow position: | chr27:20795555-20795712 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 135-263 |
| Cow position: | chr27:22543591-22543721 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 135-286 |
| Cow position: | chr27:30846422-30846579 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 136-286 |
| Cow position: | chr27:8942921-8942769 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 115 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 154-286 |
| Cow position: | chr27:22179976-22179846 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 169-284 |
| Cow position: | chr27:11466662-11466547 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 93 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 39, 53 |
| Conread position: | 172-295 |
| Cow position: | chr27:22348296-22348419 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 98 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 184-286 |
| Cow position: | chr27:19508831-19508933 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 84 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 190-286 |
| Cow position: | chr27:26959791-26959694 (view UCSC Genome Browser custom track) |
| Alignm length: | 98 |
| Alignm identity: | 83 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 190-287 |
| Cow position: | chr27:7412217-7412314 (view UCSC Genome Browser custom track) |
| Alignm length: | 98 |
| Alignm identity: | 81 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 191-286 |
| Cow position: | chr27:19576498-19576403 (view UCSC Genome Browser custom track) |
| Alignm length: | 97 |
| Alignm identity: | 82 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 90, 83 |
Show alignments to all cow chromosomes.