Cow genome map
| Conread name: | Ova1-OVRM10075A05 |
| Conread position: | 54-286 |
| Cow position: | chr4:19324239-19324003 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 44, 66 |
| Conread position: | 60-286 |
| Cow position: | chr4:65806137-65805924 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 159 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 73-281 |
| Cow position: | chr4:47349080-47348860 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 164 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 13, 42 |
| Conread position: | 74-302 |
| Cow position: | chr4:45367981-45367753 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 165 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 94, 14 |
| Conread position: | 76-284 |
| Cow position: | chr4:46125714-46125913 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 25, 38 |
| Conread position: | 78-286 |
| Cow position: | chr4:43865620-43865828 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 147 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 12, 35 |
| Conread position: | 79-286 |
| Cow position: | chr4:10472422-10472219 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 188, 21 |
| Conread position: | 80-205 |
| Cow position: | chr4:57550952-57550828 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 18, 34 |
| Conread position: | 80-254 |
| Cow position: | chr4:10962372-10962535 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 131 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 28, 87 |
| Conread position: | 80-258 |
| Cow position: | chr4:13393863-13393689 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 30, 102 |
| Conread position: | 80-284 |
| Cow position: | chr4:48321297-48321491 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 8, 21 |
| Conread position: | 80-291 |
| Cow position: | chr4:23808169-23807974 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 159 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 11, 29 |
| Conread position: | 81-243 |
| Cow position: | chr4:47029911-47029756 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 127 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 29, 84 |
| Conread position: | 81-295 |
| Cow position: | chr4:37704504-37704286 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 10, 28 |
| Conread position: | 83-286 |
| Cow position: | chr4:5904721-5904515 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 146 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 83-287 |
| Cow position: | chr4:5046929-5047118 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 83-320 |
| Cow position: | chr4:54191307-54191090 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 172 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 84-288 |
| Cow position: | chr4:53169369-53169568 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 85-284 |
| Cow position: | chr4:8412889-8413094 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 82, 24 |
| Conread position: | 85-292 |
| Cow position: | chr4:46708146-46708348 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 127, 16 |
| Conread position: | 87-190 |
| Cow position: | chr4:46656336-46656235 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 88 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 15, 20 |
| Conread position: | 87-239 |
| Cow position: | chr4:2423001-2422849 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 27, 95 |
| Conread position: | 87-338 |
| Cow position: | chr4:62020186-62020429 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 199, 12 |
| Conread position: | 88-205 |
| Cow position: | chr4:65649879-65649994 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 98 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 88-286 |
| Cow position: | chr4:8947625-8947424 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 120, 141 |
| Conread position: | 88-286 |
| Cow position: | chr4:19542350-19542161 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 145, 20 |
| Conread position: | 88-321 |
| Cow position: | chr4:19304573-19304339 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 174 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 70, 24 |
| Conread position: | 89-275 |
| Cow position: | chr4:20315296-20315473 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 147 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 89-286 |
| Cow position: | chr4:5132547-5132362 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 89-286 |
| Cow position: | chr4:12442111-12441924 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 89-286 |
| Cow position: | chr4:13241842-13241654 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 23, 76 |
| Conread position: | 90-286 |
| Cow position: | chr4:46435532-46435353 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 90-305 |
| Cow position: | chr4:65919821-65919619 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 20, 118 |
| Conread position: | 91-319 |
| Cow position: | chr4:58389038-58389245 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 142, 21 |
| Conread position: | 93-193 |
| Cow position: | chr4:21065220-21065122 (view UCSC Genome Browser custom track) |
| Alignm length: | 102 |
| Alignm identity: | 89 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 73, 19 |
| Conread position: | 93-276 |
| Cow position: | chr4:14153316-14153146 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 142 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 17, 40 |
| Conread position: | 93-286 |
| Cow position: | chr4:63117430-63117613 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 95-302 |
| Cow position: | chr4:21875029-21874816 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 73, 13 |
| Conread position: | 96-286 |
| Cow position: | chr4:65131229-65131424 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 148 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 88, 16 |
| Conread position: | 111-193 |
| Cow position: | chr4:19324200-19324118 (view UCSC Genome Browser custom track) |
| Alignm length: | 83 |
| Alignm identity: | 76 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 111-205 |
| Cow position: | chr4:47352030-47351936 (view UCSC Genome Browser custom track) |
| Alignm length: | 95 |
| Alignm identity: | 80 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 111-270 |
| Cow position: | chr4:59337489-59337323 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 111-274 |
| Cow position: | chr4:21801215-21801058 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 123 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 111-274 |
| Cow position: | chr4:57421257-57421091 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 125 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 57, 138 |
| Conread position: | 111-282 |
| Cow position: | chr4:10851241-10851418 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 143 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 111-286 |
| Cow position: | chr4:34631087-34630927 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 111-286 |
| Cow position: | chr4:45909780-45909947 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 111-286 |
| Cow position: | chr4:61313019-61313184 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 111-288 |
| Cow position: | chr4:12901357-12901531 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 111-288 |
| Cow position: | chr4:18095481-18095647 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 111-302 |
| Cow position: | chr4:13973766-13973956 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 140 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 61, 20 |
| Conread position: | 111-324 |
| Cow position: | chr4:15462047-15462255 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 164 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 165, 177 |
| Conread position: | 111-327 |
| Cow position: | chr4:54937274-54937070 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 157 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 200, 57 |
| Conread position: | 112-283 |
| Cow position: | chr4:30845564-30845403 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 130 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 112-286 |
| Cow position: | chr4:20843120-20842939 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 125, 0 |
| Conread position: | 113-286 |
| Cow position: | chr4:51477396-51477569 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 130 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 83, 145 |
| Conread position: | 114-287 |
| Cow position: | chr4:45012976-45013142 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 130 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 96, 120 |
| Conread position: | 118-286 |
| Cow position: | chr4:69398658-69398837 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 43, 136 |
| Conread position: | 119-286 |
| Cow position: | chr4:65265116-65265277 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 130-282 |
| Cow position: | chr4:11871747-11871889 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 159-286 |
| Cow position: | chr4:50676016-50676144 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 101 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 45, 85 |
| Conread position: | 159-286 |
| Cow position: | chr4:58880806-58880932 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 103 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 159-287 |
| Cow position: | chr4:27530275-27530146 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 12, 33 |
| Conread position: | 166-286 |
| Cow position: | chr4:19098621-19098501 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 173-286 |
| Cow position: | chr4:11964830-11964719 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 93 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 111, 48 |
| Conread position: | 174-286 |
| Cow position: | chr4:28570238-28570126 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 92 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 183-286 |
| Cow position: | chr4:38944126-38944229 (view UCSC Genome Browser custom track) |
| Alignm length: | 104 |
| Alignm identity: | 85 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 185-286 |
| Cow position: | chr4:19420627-19420728 (view UCSC Genome Browser custom track) |
| Alignm length: | 102 |
| Alignm identity: | 86 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 188-320 |
| Cow position: | chr4:46476819-46476950 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 196-286 |
| Cow position: | chr4:39569322-39569232 (view UCSC Genome Browser custom track) |
| Alignm length: | 91 |
| Alignm identity: | 78 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.