Cow genome map
| Conread name: | Ova1-OVRM10075A05 |
| Conread position: | 52-266 |
| Cow position: | chr6:35628358-35628141 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 56-271 |
| Cow position: | chr6:58227676-58227471 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 47, 17 |
| Conread position: | 67-286 |
| Cow position: | chr6:35896059-35896277 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 114, 45 |
| Conread position: | 68-182 |
| Cow position: | chr6:63762311-63762423 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 91 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 68-186 |
| Cow position: | chr6:30688244-30688356 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 97 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 74-286 |
| Cow position: | chr6:13040713-13040516 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 76-270 |
| Cow position: | chr6:37199256-37199443 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 120, 36 |
| Conread position: | 77-238 |
| Cow position: | chr6:23353818-23353659 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 18, 34 |
| Conread position: | 77-286 |
| Cow position: | chr6:21869366-21869573 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 163 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 78-286 |
| Cow position: | chr6:35993872-35993660 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 29, 169 |
| Conread position: | 80-284 |
| Cow position: | chr6:67215028-67214827 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 15, 30 |
| Conread position: | 80-286 |
| Cow position: | chr6:25434762-25434959 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 30, 15 |
| Conread position: | 80-286 |
| Cow position: | chr6:59719067-59718872 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 80-287 |
| Cow position: | chr6:7130607-7130805 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 161 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 80-302 |
| Cow position: | chr6:38234513-38234293 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 83, 13 |
| Conread position: | 80-302 |
| Cow position: | chr6:60057378-60057594 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 31, 25 |
| Conread position: | 80-304 |
| Cow position: | chr6:32809572-32809339 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 174 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 98, 32 |
| Conread position: | 81-206 |
| Cow position: | chr6:35964230-35964349 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 101 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 81-283 |
| Cow position: | chr6:34499017-34498818 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 82-263 |
| Cow position: | chr6:5673651-5673477 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 84-286 |
| Cow position: | chr6:46282741-46282928 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 84-287 |
| Cow position: | chr6:50882859-50882656 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 154 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 26, 11 |
| Conread position: | 85-278 |
| Cow position: | chr6:10224466-10224275 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 72, 22 |
| Conread position: | 85-286 |
| Cow position: | chr6:29852806-29852990 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 86-284 |
| Cow position: | chr6:35702077-35702267 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 147, 21 |
| Conread position: | 88-276 |
| Cow position: | chr6:61128678-61128871 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 82, 27 |
| Conread position: | 89-286 |
| Cow position: | chr6:18903790-18903976 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 89-299 |
| Cow position: | chr6:21066600-21066819 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 5, 27 |
| Conread position: | 95-286 |
| Cow position: | chr6:30974318-30974118 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 84, 13 |
| Conread position: | 96-286 |
| Cow position: | chr6:6098009-6098190 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 96-286 |
| Cow position: | chr6:8209334-8209529 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 80, 22 |
| Conread position: | 101-286 |
| Cow position: | chr6:60186416-60186587 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 141 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 101-286 |
| Cow position: | chr6:60265933-60266107 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 108-249 |
| Cow position: | chr6:48678854-48678711 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 109-320 |
| Cow position: | chr6:51969337-51969118 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 159 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 67, 45 |
| Conread position: | 111-238 |
| Cow position: | chr6:60457509-60457379 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 101 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 111-249 |
| Cow position: | chr6:63409068-63409209 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 59, 20 |
| Conread position: | 111-271 |
| Cow position: | chr6:13326925-13327084 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 111-275 |
| Cow position: | chr6:34034679-34034513 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 140, 0 |
| Conread position: | 111-286 |
| Cow position: | chr6:6401193-6401027 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 111-286 |
| Cow position: | chr6:9736417-9736581 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 136 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 103, 39 |
| Conread position: | 111-286 |
| Cow position: | chr6:17194455-17194287 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 132 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 26, 89 |
| Conread position: | 111-286 |
| Cow position: | chr6:37783654-37783476 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 111-286 |
| Cow position: | chr6:49607637-49607468 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 111-286 |
| Cow position: | chr6:49646051-49645884 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 111-288 |
| Cow position: | chr6:67456967-67456792 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 132 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 122, 95 |
| Conread position: | 112-282 |
| Cow position: | chr6:67044494-67044655 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 112-285 |
| Cow position: | chr6:60517065-60516903 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 112-286 |
| Cow position: | chr6:49096201-49096378 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 113-286 |
| Cow position: | chr6:47339099-47339280 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 113-325 |
| Cow position: | chr6:51675161-51674946 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 68, 125 |
| Conread position: | 120-295 |
| Cow position: | chr6:36516204-36516027 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 145-300 |
| Cow position: | chr6:47676234-47676074 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 26, 137 |
| Conread position: | 149-286 |
| Cow position: | chr6:28900531-28900402 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 113 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 150-287 |
| Cow position: | chr6:1684887-1684752 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 66, 53 |
| Conread position: | 159-278 |
| Cow position: | chr6:6343634-6343514 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 159-285 |
| Cow position: | chr6:54990799-54990924 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 159-286 |
| Cow position: | chr6:35964332-35964459 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 101 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 165-284 |
| Cow position: | chr6:23465835-23465955 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 98 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 7, 114 |
| Conread position: | 166-286 |
| Cow position: | chr6:60451624-60451503 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 95 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 170-286 |
| Cow position: | chr6:1002071-1002187 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 92 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 172-312 |
| Cow position: | chr6:107236-107374 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 173-286 |
| Cow position: | chr6:19131619-19131506 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 93 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.