Cow genome map
| Conread name: | Ova1-OVRM10075A05 |
| Conread position: | 49-288 |
| Cow position: | chr9:39681084-39681334 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 27, 44 |
| Conread position: | 53-284 |
| Cow position: | chr9:10118877-10118668 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 56-191 |
| Cow position: | chr9:1733084-1733217 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 103 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 60-282 |
| Cow position: | chr9:42998780-42998555 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 32, 50 |
| Conread position: | 66-286 |
| Cow position: | chr9:1937906-1938123 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 182, 17 |
| Conread position: | 68-286 |
| Cow position: | chr9:19067570-19067776 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 69-285 |
| Cow position: | chr9:55084532-55084310 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 135, 43 |
| Conread position: | 74-286 |
| Cow position: | chr9:6293376-6293588 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 152 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 62, 19 |
| Conread position: | 76-286 |
| Cow position: | chr9:44467561-44467346 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 103, 36 |
| Conread position: | 76-291 |
| Cow position: | chr9:55013538-55013335 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 31, 117 |
| Conread position: | 78-286 |
| Cow position: | chr9:8562611-8562815 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 168 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 0 |
| Conread position: | 78-286 |
| Cow position: | chr9:23840596-23840401 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 10, 36 |
| Conread position: | 79-254 |
| Cow position: | chr9:42986504-42986325 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 131 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 79-268 |
| Cow position: | chr9:8552408-8552605 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 111, 28 |
| Conread position: | 79-274 |
| Cow position: | chr9:36826695-36826887 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 31, 53 |
| Conread position: | 79-286 |
| Cow position: | chr9:23541593-23541399 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 14, 38 |
| Conread position: | 80-286 |
| Cow position: | chr9:1323866-1323666 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 152 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 126, 12 |
| Conread position: | 80-286 |
| Cow position: | chr9:23403604-23403811 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 88, 30 |
| Conread position: | 80-286 |
| Cow position: | chr9:34264900-34265088 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 80-310 |
| Cow position: | chr9:33681454-33681676 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 164 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 224, 27 |
| Conread position: | 81-286 |
| Cow position: | chr9:55354402-55354604 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 39, 123 |
| Conread position: | 82-291 |
| Cow position: | chr9:11304281-11304078 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 25, 121 |
| Conread position: | 85-286 |
| Cow position: | chr9:29578077-29578274 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 55, 9 |
| Conread position: | 86-286 |
| Cow position: | chr9:28686167-28686380 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 21, 169 |
| Conread position: | 87-269 |
| Cow position: | chr9:9779596-9779766 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 87-275 |
| Cow position: | chr9:43281459-43281642 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 10, 108 |
| Conread position: | 88-310 |
| Cow position: | chr9:34065772-34065535 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 44, 25 |
| Conread position: | 89-264 |
| Cow position: | chr9:17360540-17360714 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 21, 64 |
| Conread position: | 89-291 |
| Cow position: | chr9:33597795-33597983 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 150 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 144, 26 |
| Conread position: | 93-282 |
| Cow position: | chr9:49225201-49225393 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 73, 22 |
| Conread position: | 94-286 |
| Cow position: | chr9:8535685-8535860 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 94-286 |
| Cow position: | chr9:52513640-52513455 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 95-284 |
| Cow position: | chr9:4268175-4267991 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 151 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 95-286 |
| Cow position: | chr9:9654506-9654314 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 15, 57 |
| Conread position: | 95-286 |
| Cow position: | chr9:18226922-18226742 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 141 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 95-286 |
| Cow position: | chr9:18342541-18342726 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 95-302 |
| Cow position: | chr9:9461839-9461649 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 96-281 |
| Cow position: | chr9:34910250-34910073 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 109-286 |
| Cow position: | chr9:52840063-52839888 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 85, 25 |
| Conread position: | 110-287 |
| Cow position: | chr9:6169660-6169492 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 111-206 |
| Cow position: | chr9:2927589-2927683 (view UCSC Genome Browser custom track) |
| Alignm length: | 96 |
| Alignm identity: | 81 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 111-261 |
| Cow position: | chr9:53553589-53553434 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 111-266 |
| Cow position: | chr9:8022943-8023099 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 73, 131 |
| Conread position: | 111-283 |
| Cow position: | chr9:46189956-46190132 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 143 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 54, 24 |
| Conread position: | 111-286 |
| Cow position: | chr9:8705967-8706139 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 127 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 111-286 |
| Cow position: | chr9:9686577-9686419 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 111-286 |
| Cow position: | chr9:52807580-52807411 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 122, 9 |
| Conread position: | 111-287 |
| Cow position: | chr9:36634954-36634769 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 82, 158 |
| Conread position: | 111-295 |
| Cow position: | chr9:7362844-7363028 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 55, 179 |
| Conread position: | 111-304 |
| Cow position: | chr9:54716776-54716591 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 191, 69 |
| Conread position: | 111-320 |
| Cow position: | chr9:11427485-11427685 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 121, 47 |
| Conread position: | 112-286 |
| Cow position: | chr9:22375004-22375167 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 134 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 113-283 |
| Cow position: | chr9:46664637-46664818 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 113-288 |
| Cow position: | chr9:18217280-18217104 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 114-283 |
| Cow position: | chr9:31345321-31345490 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 126 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 114-312 |
| Cow position: | chr9:56772905-56773096 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 146 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 170, 52 |
| Conread position: | 118-286 |
| Cow position: | chr9:31270303-31270485 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 50, 13 |
| Conread position: | 118-328 |
| Cow position: | chr9:5407689-5407482 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 24, 28 |
| Conread position: | 119-286 |
| Cow position: | chr9:34811302-34811469 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 120-286 |
| Cow position: | chr9:34014420-34014256 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 132-352 |
| Cow position: | chr9:26310345-26310561 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 88, 55 |
| Conread position: | 136-276 |
| Cow position: | chr9:1520898-1520757 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 112 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 69, 94 |
| Conread position: | 136-285 |
| Cow position: | chr9:31814547-31814394 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 27, 114 |
| Conread position: | 147-296 |
| Cow position: | chr9:36849853-36850001 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 86, 96 |
| Conread position: | 159-286 |
| Cow position: | chr9:39758386-39758511 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 159-295 |
| Cow position: | chr9:31354204-31354067 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 108 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 94, 131 |
| Conread position: | 167-286 |
| Cow position: | chr9:1972822-1972941 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 93 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 168-286 |
| Cow position: | chr9:32982200-32982082 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 171-284 |
| Cow position: | chr9:41701932-41702045 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 95 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 171-286 |
| Cow position: | chr9:19758599-19758713 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 92 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 176-286 |
| Cow position: | chr9:37291768-37291879 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 91 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 181-286 |
| Cow position: | chr9:39011581-39011476 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 85 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 190-284 |
| Cow position: | chr9:32052173-32052267 (view UCSC Genome Browser custom track) |
| Alignm length: | 95 |
| Alignm identity: | 83 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 190-286 |
| Cow position: | chr9:24887101-24887199 (view UCSC Genome Browser custom track) |
| Alignm length: | 99 |
| Alignm identity: | 83 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 196-286 |
| Cow position: | chr9:9459887-9459978 (view UCSC Genome Browser custom track) |
| Alignm length: | 92 |
| Alignm identity: | 79 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 84, 0 |
Show alignments to all cow chromosomes.