Cow genome map

Conread name: Ova1-OVRM10075A05

Conread position: 38-255
Cow position: chrX:42883526-42883322 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 158
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 18, 11

Conread position: 47-324
Cow position: chrX:19096917-19097192 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 196
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 151, 18

Conread position: 48-186
Cow position: chrX:35285453-35285316 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 110
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 15, 62

Conread position: 72-261
Cow position: chrX:27682955-27682753 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 154
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 19, 197

Conread position: 72-286
Cow position: chrX:11084785-11085000 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 156
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 95, 36

Conread position: 73-286
Cow position: chrX:25282762-25282975 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 159
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 105, 39

Conread position: 74-286
Cow position: chrX:23513751-23513954 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 153
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 43, 34

Conread position: 76-286
Cow position: chrX:41363595-41363796 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 158
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 6, 127

Conread position: 77-295
Cow position: chrX:4592232-4592447 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 157
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 27, 84

Conread position: 78-286
Cow position: chrX:878099-878317 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 166
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 34, 0

Conread position: 79-286
Cow position: chrX:31983334-31983522 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 158
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 21, 0

Conread position: 80-282
Cow position: chrX:21910766-21910961 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 142
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 11, 115

Conread position: 80-286
Cow position: chrX:40531781-40531980 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 157
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 32, 0

Conread position: 80-286
Cow position: chrX:43014415-43014610 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 152
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 32, 0

Conread position: 82-206
Cow position: chrX:35848990-35848868 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 98
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 67, 30

Conread position: 82-286
Cow position: chrX:40480598-40480809 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 150
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 10, 140

Conread position: 83-195
Cow position: chrX:8759865-8759756 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 90
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 29, 0

Conread position: 83-286
Cow position: chrX:12255061-12255255 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 148
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 12, 0

Conread position: 84-277
Cow position: chrX:42164651-42164466 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 141
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 11, 0

Conread position: 86-206
Cow position: chrX:15545413-15545529 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 99
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 16, 0

Conread position: 88-176
Cow position: chrX:42161085-42160998 (view UCSC Genome Browser custom track)
Alignm length: 89
Alignm identity: 77
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 24, 0

Conread position: 88-195
Cow position: chrX:38226529-38226632 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 89
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 7, 0

Conread position: 88-231
Cow position: chrX:11717487-11717628 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 108
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 132, 24

Conread position: 88-256
Cow position: chrX:27689348-27689181 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 129
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 120, 20

Conread position: 88-276
Cow position: chrX:3405041-3405221 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 133
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 20, 0

Conread position: 88-286
Cow position: chrX:7362557-7362763 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 146
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 101, 19

Conread position: 88-286
Cow position: chrX:31829206-31829398 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 143
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 20, 0

Conread position: 89-189
Cow position: chrX:11501133-11501035 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 84
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 19, 0

Conread position: 89-351
Cow position: chrX:5872568-5872319 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 184
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 144, 16

Conread position: 89-352
Cow position: chrX:37129539-37129271 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 195
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 21, 213

Conread position: 90-206
Cow position: chrX:33640286-33640172 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 92
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 71, 0

Conread position: 93-286
Cow position: chrX:6480363-6480533 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 144
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 19, 0

Conread position: 93-286
Cow position: chrX:13382574-13382387 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 139
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 140, 19

Conread position: 94-258
Cow position: chrX:28846361-28846199 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 122
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 18, 72

Conread position: 94-286
Cow position: chrX:5017185-5017358 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 149
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 14, 0

Conread position: 95-195
Cow position: chrX:33865067-33865164 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 86
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 17, 0

Conread position: 95-282
Cow position: chrX:38853441-38853264 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 147
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 13, 0

Conread position: 95-284
Cow position: chrX:23182737-23182918 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 147
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 13, 0

Conread position: 95-286
Cow position: chrX:27393788-27393963 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 148
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 13, 0

Conread position: 95-293
Cow position: chrX:23485760-23485578 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 146
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 17, 0

Conread position: 109-291
Cow position: chrX:31373769-31373595 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 136
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 119, 23

Conread position: 110-304
Cow position: chrX:32821258-32821074 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 147
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 69, 0

Conread position: 111-205
Cow position: chrX:29328032-29327938 (view UCSC Genome Browser custom track)
Alignm length: 95
Alignm identity: 80
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 111-256
Cow position: chrX:29488243-29488104 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 112
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 122, 69

Conread position: 111-259
Cow position: chrX:32975874-32976022 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 113
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 60, 77

Conread position: 111-270
Cow position: chrX:19286684-19286830 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 123
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 70, 0

Conread position: 111-276
Cow position: chrX:13784995-13785149 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 125
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 49, 0

Conread position: 111-276
Cow position: chrX:43011926-43012079 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 124
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 88, 0

Conread position: 111-284
Cow position: chrX:37489946-37489784 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 129
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 69, 0

Conread position: 111-285
Cow position: chrX:18694705-18694867 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 129
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 25, 0

Conread position: 111-286
Cow position: chrX:616022-616196 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 140
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 96, 0

Conread position: 111-286
Cow position: chrX:16348337-16348508 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 141
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 117, 97

Conread position: 111-286
Cow position: chrX:23498446-23498617 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 131
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 25, 0

Conread position: 111-286
Cow position: chrX:23562883-23562695 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 143
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 55, 145

Conread position: 111-286
Cow position: chrX:31312273-31312092 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 142
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 87, 0

Conread position: 111-286
Cow position: chrX:37062350-37062522 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 132
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 108, 69

Conread position: 111-286
Cow position: chrX:40557441-40557616 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 135
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 78, 96

Conread position: 111-286
Cow position: chrX:41940066-41939886 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 138
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 80, 0

Conread position: 111-287
Cow position: chrX:34508777-34508606 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 138
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 42, 0

Conread position: 111-288
Cow position: chrX:36039632-36039460 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 129
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 66, 0

Conread position: 111-288
Cow position: chrX:40451851-40452023 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 130
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 69, 0

Conread position: 111-295
Cow position: chrX:7695980-7695803 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 134
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 83, 0

Conread position: 111-302
Cow position: chrX:6850442-6850258 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 136
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 13, 0

Conread position: 111-302
Cow position: chrX:9416440-9416636 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 142
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 90, 183

Conread position: 111-324
Cow position: chrX:41270750-41270956 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 156
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 98, 0

Conread position: 112-266
Cow position: chrX:27296281-27296436 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 117
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 54, 151

Conread position: 112-283
Cow position: chrX:9855907-9855733 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 137
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 53, 136

Conread position: 112-286
Cow position: chrX:17726231-17726038 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 151
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 54, 0

Conread position: 112-286
Cow position: chrX:40269724-40269554 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 141
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 168, 40

Conread position: 112-302
Cow position: chrX:25412135-25411955 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 137
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 22, 0

Conread position: 113-286
Cow position: chrX:27667655-27667488 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 135
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 120, 19

Conread position: 114-269
Cow position: chrX:47365069-47364920 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 117
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 119, 22

Conread position: 114-286
Cow position: chrX:36848343-36848515 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 139
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 25, 111

Conread position: 115-286
Cow position: chrX:6690030-6690197 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 134
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 16, 0

Conread position: 115-286
Cow position: chrX:23562086-23561920 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 128
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 166, 71

Conread position: 122-205
Cow position: chrX:41402340-41402257 (view UCSC Genome Browser custom track)
Alignm length: 84
Alignm identity: 75
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 122-286
Cow position: chrX:40046363-40046515 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 127
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 44, 0

Conread position: 137-286
Cow position: chrX:753362-753217 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 113
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 133, 38

Conread position: 139-286
Cow position: chrX:23266624-23266478 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 111
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 71, 0

Conread position: 147-322
Cow position: chrX:29680057-29680233 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 130
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 19, 64

Conread position: 165-286
Cow position: chrX:19407551-19407672 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 101
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 33, 21

Conread position: 166-286
Cow position: chrX:27189352-27189234 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 101
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 58, 0

Conread position: 166-286
Cow position: chrX:36068202-36068078 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 100
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 49, 0

Conread position: 166-287
Cow position: chrX:43730041-43730162 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 96
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 166-313
Cow position: chrX:16481387-16481530 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 112
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 122, 0

Conread position: 167-286
Cow position: chrX:20743787-20743667 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 99
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 49, 0

Conread position: 187-286
Cow position: chrX:40556296-40556396 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 86
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 46, 0

Conread position: 190-286
Cow position: chrX:11656240-11656144 (view UCSC Genome Browser custom track)
Alignm length: 97
Alignm identity: 83
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 190-286
Cow position: chrX:27668799-27668895 (view UCSC Genome Browser custom track)
Alignm length: 97
Alignm identity: 83
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 190-313
Cow position: chrX:14135837-14135712 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 96
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 104, 0

Conread position: 192-286
Cow position: chrX:27145761-27145667 (view UCSC Genome Browser custom track)
Alignm length: 95
Alignm identity: 79
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 192-295
Cow position: chrX:29050405-29050302 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 86
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 34, 97

Show alignments to all cow chromosomes.