Cow genome map
| Conread name: | Ova1-OVRM10078G07 |
| Conread position: | 1-587 |
| Cow position: | chr13:48356590-48357183 (view UCSC Genome Browser custom track) |
| Alignm length: | 610 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 35 |
| Conread position: | 2-357 |
| Cow position: | chr13:20543101-20542748 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 82 |
| Conread position: | 4-374 |
| Cow position: | chr13:34187418-34187055 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 71 |
| Conread position: | 6-661 |
| Cow position: | chr13:54283863-54284519 (view UCSC Genome Browser custom track) |
| Alignm length: | 682 |
| Alignm identity: | 480 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 70 |
| Conread position: | 7-349 |
| Cow position: | chr13:32544216-32544556 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 19 |
| Conread position: | 7-350 |
| Cow position: | chr13:34043101-34042755 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 305, 162 |
| Conread position: | 7-357 |
| Cow position: | chr13:34326398-34326061 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 119 |
| Conread position: | 7-361 |
| Cow position: | chr13:4872339-4872697 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 7-407 |
| Cow position: | chr13:35029790-35030178 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 59 |
| Conread position: | 7-409 |
| Cow position: | chr13:2297530-2297129 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 64 |
| Conread position: | 7-414 |
| Cow position: | chr13:17307746-17308149 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 84 |
| Conread position: | 7-665 |
| Cow position: | chr13:2389535-2388865 (view UCSC Genome Browser custom track) |
| Alignm length: | 681 |
| Alignm identity: | 474 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 309 |
| Conread position: | 7-665 |
| Cow position: | chr13:15521253-15520562 (view UCSC Genome Browser custom track) |
| Alignm length: | 695 |
| Alignm identity: | 491 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 671 |
| Conread position: | 7-665 |
| Cow position: | chr13:21840935-21840241 (view UCSC Genome Browser custom track) |
| Alignm length: | 701 |
| Alignm identity: | 477 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 253 |
| Conread position: | 7-665 |
| Cow position: | chr13:31734811-31734132 (view UCSC Genome Browser custom track) |
| Alignm length: | 690 |
| Alignm identity: | 451 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 221 |
| Conread position: | 7-665 |
| Cow position: | chr13:34868032-34868696 (view UCSC Genome Browser custom track) |
| Alignm length: | 678 |
| Alignm identity: | 460 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 218 |
| Conread position: | 7-665 |
| Cow position: | chr13:49972976-49973637 (view UCSC Genome Browser custom track) |
| Alignm length: | 671 |
| Alignm identity: | 455 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 255 |
| Conread position: | 8-345 |
| Cow position: | chr13:32738546-32738216 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 159 |
| Conread position: | 8-349 |
| Cow position: | chr13:15925121-15924774 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 8-350 |
| Cow position: | chr13:4481745-4482086 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 73 |
| Conread position: | 8-357 |
| Cow position: | chr13:1593893-1593537 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 128 |
| Conread position: | 8-357 |
| Cow position: | chr13:30302334-30302683 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 19 |
| Conread position: | 8-357 |
| Cow position: | chr13:35756497-35756857 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 19 |
| Conread position: | 8-400 |
| Cow position: | chr13:15542728-15543125 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 45 |
| Conread position: | 8-467 |
| Cow position: | chr13:4940347-4940809 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 368 |
| Conread position: | 8-648 |
| Cow position: | chr13:33337060-33336403 (view UCSC Genome Browser custom track) |
| Alignm length: | 661 |
| Alignm identity: | 467 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 84 |
| Conread position: | 8-665 |
| Cow position: | chr13:9043794-9044454 (view UCSC Genome Browser custom track) |
| Alignm length: | 686 |
| Alignm identity: | 490 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 84 |
| Conread position: | 11-636 |
| Cow position: | chr13:15080904-15080290 (view UCSC Genome Browser custom track) |
| Alignm length: | 635 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 7 |
| Conread position: | 11-644 |
| Cow position: | chr13:11764916-11764313 (view UCSC Genome Browser custom track) |
| Alignm length: | 645 |
| Alignm identity: | 398 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 41, 97 |
| Conread position: | 13-358 |
| Cow position: | chr13:50108734-50109081 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 112 |
| Conread position: | 14-554 |
| Cow position: | chr13:676235-676775 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 188 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 22, 60 |
| Conread position: | 15-309 |
| Cow position: | chr13:53834041-53834336 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 204 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 32-363 |
| Cow position: | chr13:31613048-31612713 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 280, 185 |
| Conread position: | 32-665 |
| Cow position: | chr13:3655019-3654373 (view UCSC Genome Browser custom track) |
| Alignm length: | 672 |
| Alignm identity: | 464 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 281, 196 |
| Conread position: | 33-665 |
| Cow position: | chr13:30245446-30244780 (view UCSC Genome Browser custom track) |
| Alignm length: | 673 |
| Alignm identity: | 452 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 173, 259 |
| Conread position: | 37-664 |
| Cow position: | chr13:32986752-32986104 (view UCSC Genome Browser custom track) |
| Alignm length: | 657 |
| Alignm identity: | 457 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 275, 109 |
| Conread position: | 41-356 |
| Cow position: | chr13:33825440-33825116 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 36 |
| Conread position: | 41-554 |
| Cow position: | chr13:2231969-2232505 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 341 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 27, 11 |
| Conread position: | 42-338 |
| Cow position: | chr13:30140290-30140587 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 194 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 22, 128 |
| Conread position: | 50-361 |
| Cow position: | chr13:6668820-6668503 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 53-357 |
| Cow position: | chr13:46733036-46732739 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 197 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 259, 161 |
| Conread position: | 53-358 |
| Cow position: | chr13:60704209-60703914 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 206 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 159, 40 |
| Conread position: | 56-374 |
| Cow position: | chr13:30237489-30237808 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 234 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 114, 145 |
| Conread position: | 57-664 |
| Cow position: | chr13:3276473-3277106 (view UCSC Genome Browser custom track) |
| Alignm length: | 642 |
| Alignm identity: | 452 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 255, 19 |
| Conread position: | 76-357 |
| Cow position: | chr13:34936472-34936759 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 12 |
| Conread position: | 81-665 |
| Cow position: | chr13:30657625-30657023 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 231, 288 |
| Conread position: | 81-665 |
| Cow position: | chr13:62328243-62327631 (view UCSC Genome Browser custom track) |
| Alignm length: | 620 |
| Alignm identity: | 448 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 226, 122 |
| Conread position: | 89-665 |
| Cow position: | chr13:34912020-34911426 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 140 |
| Conread position: | 102-361 |
| Cow position: | chr13:34143302-34143038 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 102-366 |
| Cow position: | chr13:2909087-2908823 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 229 |
| Conread position: | 102-614 |
| Cow position: | chr13:33928189-33927665 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 33 |
| Conread position: | 112-361 |
| Cow position: | chr13:31831976-31832222 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 112-654 |
| Cow position: | chr13:34767851-34767340 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 249, 23 |
| Conread position: | 119-361 |
| Cow position: | chr13:13046446-13046202 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 0 |
| Conread position: | 121-402 |
| Cow position: | chr13:3058617-3058330 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 191, 0 |
| Conread position: | 122-366 |
| Cow position: | chr13:34692547-34692788 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 192 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 186, 24 |
| Conread position: | 135-273 |
| Cow position: | chr13:61951583-61951719 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 226-367 |
| Cow position: | chr13:32606693-32606547 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 329-648 |
| Cow position: | chr13:32738206-32737883 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 105 |
| Conread position: | 356-665 |
| Cow position: | chr13:4872718-4873030 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 78 |
| Conread position: | 361-559 |
| Cow position: | chr13:15451838-15451649 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 55, 71 |
| Conread position: | 362-647 |
| Cow position: | chr13:4940734-4941026 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 72 |
| Conread position: | 362-648 |
| Cow position: | chr13:1593506-1593216 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 71 |
| Conread position: | 362-648 |
| Cow position: | chr13:31612688-31612395 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 72 |
| Conread position: | 362-665 |
| Cow position: | chr13:15924735-15924431 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 19 |
| Conread position: | 362-665 |
| Cow position: | chr13:23003868-23003563 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 72 |
| Conread position: | 363-665 |
| Cow position: | chr13:2908800-2908497 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 15 |
| Conread position: | 363-665 |
| Cow position: | chr13:3567433-3567747 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 18 |
| Conread position: | 363-665 |
| Cow position: | chr13:33825081-33824782 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 69 |
| Conread position: | 363-665 |
| Cow position: | chr13:34692811-34693118 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 69 |
| Conread position: | 367-665 |
| Cow position: | chr13:34187035-34186732 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 69 |
| Conread position: | 367-665 |
| Cow position: | chr13:34936795-34937100 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 69 |
| Conread position: | 376-665 |
| Cow position: | chr13:34042703-34042416 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 58 |
| Conread position: | 382-664 |
| Cow position: | chr13:20542700-20542423 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 206 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 78, 51 |
| Conread position: | 382-665 |
| Cow position: | chr13:50109129-50109415 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 52 |
| Conread position: | 450-646 |
| Cow position: | chr13:46732479-46732289 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 33, 15 |
| Conread position: | 450-648 |
| Cow position: | chr13:16343474-16343277 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 145 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 41, 144 |
| Conread position: | 480-665 |
| Cow position: | chr13:4483569-4483750 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 146 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 537-665 |
| Cow position: | chr13:60466165-60466290 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 539-665 |
| Cow position: | chr13:3058281-3058157 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 99, 0 |
Show alignments to all cow chromosomes.