Cow genome map

Conread name: Ova1-OVRM10078G07

Conread position: 1-361
Cow position: chr16:25157426-25157067 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 94

Conread position: 1-583
Cow position: chr16:16687664-16688238 (view UCSC Genome Browser custom track)
Alignm length: 599
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 39

Conread position: 3-356
Cow position: chr16:29031715-29032063 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 56

Conread position: 3-374
Cow position: chr16:36232802-36232442 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 260
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 49, 34

Conread position: 3-665
Cow position: chr16:42051546-42050904 (view UCSC Genome Browser custom track)
Alignm length: 675
Alignm identity: 463
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 58

Conread position: 4-363
Cow position: chr16:2728524-2728161 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 18

Conread position: 5-194
Cow position: chr16:2412227-2412037 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 142
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 13, 88

Conread position: 6-363
Cow position: chr16:25084420-25084776 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 70

Conread position: 7-320
Cow position: chr16:21185073-21185386 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 307

Conread position: 7-342
Cow position: chr16:18688326-18687996 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 155

Conread position: 7-361
Cow position: chr16:10376471-10376122 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 143

Conread position: 7-403
Cow position: chr16:32605617-32606022 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 0

Conread position: 7-409
Cow position: chr16:6942414-6942823 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 0

Conread position: 7-625
Cow position: chr16:4303671-4303031 (view UCSC Genome Browser custom track)
Alignm length: 651
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 61

Conread position: 7-665
Cow position: chr16:31555-32221 (view UCSC Genome Browser custom track)
Alignm length: 682
Alignm identity: 464
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 99

Conread position: 7-665
Cow position: chr16:5660666-5661333 (view UCSC Genome Browser custom track)
Alignm length: 689
Alignm identity: 480
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 61

Conread position: 7-665
Cow position: chr16:5918273-5918966 (view UCSC Genome Browser custom track)
Alignm length: 707
Alignm identity: 465
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 199

Conread position: 7-665
Cow position: chr16:23253707-23253024 (view UCSC Genome Browser custom track)
Alignm length: 694
Alignm identity: 482
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 53

Conread position: 7-665
Cow position: chr16:28171568-28170880 (view UCSC Genome Browser custom track)
Alignm length: 694
Alignm identity: 480
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 126

Conread position: 8-177
Cow position: chr16:37446554-37446390 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 124
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 28, 83

Conread position: 8-350
Cow position: chr16:8817312-8816965 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 333

Conread position: 8-357
Cow position: chr16:7676901-7676549 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 18

Conread position: 8-357
Cow position: chr16:12539130-12538777 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 70

Conread position: 8-357
Cow position: chr16:15183599-15183950 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 64

Conread position: 8-357
Cow position: chr16:25340769-25341116 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 18

Conread position: 8-367
Cow position: chr16:25440409-25440776 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 45

Conread position: 8-367
Cow position: chr16:25458681-25458313 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 53

Conread position: 8-648
Cow position: chr16:9929354-9930009 (view UCSC Genome Browser custom track)
Alignm length: 663
Alignm identity: 449
Alignm E-value: 0
Alignm gaps (pig, cow): 210, 24

Conread position: 8-648
Cow position: chr16:14666995-14666360 (view UCSC Genome Browser custom track)
Alignm length: 649
Alignm identity: 464
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 280

Conread position: 8-665
Cow position: chr16:9776930-9777568 (view UCSC Genome Browser custom track)
Alignm length: 666
Alignm identity: 475
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 83

Conread position: 8-665
Cow position: chr16:10204623-10203947 (view UCSC Genome Browser custom track)
Alignm length: 684
Alignm identity: 493
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 291

Conread position: 8-665
Cow position: chr16:40297380-40296695 (view UCSC Genome Browser custom track)
Alignm length: 691
Alignm identity: 486
Alignm E-value: 0
Alignm gaps (pig, cow): 304, 33

Conread position: 9-357
Cow position: chr16:43898475-43898121 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 178

Conread position: 10-341
Cow position: chr16:24881894-24881556 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 288

Conread position: 10-665
Cow position: chr16:15565547-15566228 (view UCSC Genome Browser custom track)
Alignm length: 692
Alignm identity: 480
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 74

Conread position: 15-226
Cow position: chr16:51083376-51083583 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 152
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 13, 60

Conread position: 18-514
Cow position: chr16:9457327-9457841 (view UCSC Genome Browser custom track)
Alignm length: 529
Alignm identity: 336
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 10, 31

Conread position: 32-350
Cow position: chr16:29045849-29046161 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 280, 156

Conread position: 32-357
Cow position: chr16:15491539-15491855 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 275, 50

Conread position: 32-665
Cow position: chr16:408214-407548 (view UCSC Genome Browser custom track)
Alignm length: 670
Alignm identity: 468
Alignm E-value: 0
Alignm gaps (pig, cow): 280, 649

Conread position: 32-665
Cow position: chr16:1568629-1567971 (view UCSC Genome Browser custom track)
Alignm length: 669
Alignm identity: 471
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 59

Conread position: 37-665
Cow position: chr16:2484314-2483659 (view UCSC Genome Browser custom track)
Alignm length: 659
Alignm identity: 469
Alignm E-value: 0
Alignm gaps (pig, cow): 282, 638

Conread position: 37-665
Cow position: chr16:28472273-28471618 (view UCSC Genome Browser custom track)
Alignm length: 660
Alignm identity: 451
Alignm E-value: 0
Alignm gaps (pig, cow): 275, 366

Conread position: 38-665
Cow position: chr16:49236283-49235668 (view UCSC Genome Browser custom track)
Alignm length: 641
Alignm identity: 453
Alignm E-value: 0
Alignm gaps (pig, cow): 271, 45

Conread position: 39-648
Cow position: chr16:31376399-31375812 (view UCSC Genome Browser custom track)
Alignm length: 621
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 281, 16

Conread position: 41-361
Cow position: chr16:29676477-29676154 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 35

Conread position: 41-665
Cow position: chr16:11052001-11052643 (view UCSC Genome Browser custom track)
Alignm length: 652
Alignm identity: 474
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 33

Conread position: 43-357
Cow position: chr16:31593077-31592759 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 269, 182

Conread position: 44-375
Cow position: chr16:1430057-1430393 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 268, 0

Conread position: 45-361
Cow position: chr16:2239894-2239582 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 222
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 268, 20

Conread position: 46-357
Cow position: chr16:29982106-29982416 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 221
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 73, 155

Conread position: 47-361
Cow position: chr16:23670748-23670443 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 210
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 70, 26

Conread position: 47-648
Cow position: chr16:51685281-51685906 (view UCSC Genome Browser custom track)
Alignm length: 633
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 177

Conread position: 51-375
Cow position: chr16:27004216-27004534 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 215
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 65, 58

Conread position: 52-361
Cow position: chr16:25152618-25152925 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 220
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 7, 21

Conread position: 52-665
Cow position: chr16:49257732-49257100 (view UCSC Genome Browser custom track)
Alignm length: 647
Alignm identity: 483
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 12

Conread position: 54-357
Cow position: chr16:32934993-32935282 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 219
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 10, 113

Conread position: 56-665
Cow position: chr16:42740577-42739940 (view UCSC Genome Browser custom track)
Alignm length: 648
Alignm identity: 458
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 58

Conread position: 57-581
Cow position: chr16:54647179-54647719 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 360
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 252, 11

Conread position: 60-374
Cow position: chr16:14422563-14422880 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 215
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 148, 20

Conread position: 63-319
Cow position: chr16:15369290-15369537 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 192
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 49, 123

Conread position: 77-357
Cow position: chr16:26662620-26662895 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 242, 7

Conread position: 83-366
Cow position: chr16:55080484-55080199 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 180
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 14, 183

Conread position: 84-367
Cow position: chr16:20255437-20255153 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 161

Conread position: 94-357
Cow position: chr16:27734924-27734657 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 23

Conread position: 94-665
Cow position: chr16:7905523-7906102 (view UCSC Genome Browser custom track)
Alignm length: 587
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 213, 197

Conread position: 94-665
Cow position: chr16:10437137-10437726 (view UCSC Genome Browser custom track)
Alignm length: 594
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 225, 353

Conread position: 94-665
Cow position: chr16:19713968-19713406 (view UCSC Genome Browser custom track)
Alignm length: 582
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 213, 282

Conread position: 102-361
Cow position: chr16:6549633-6549370 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 202, 157

Conread position: 102-361
Cow position: chr16:16029653-16029911 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 178
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 19, 7

Conread position: 105-647
Cow position: chr16:47562587-47563158 (view UCSC Genome Browser custom track)
Alignm length: 577
Alignm identity: 364
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 117, 52

Conread position: 112-374
Cow position: chr16:36282294-36282564 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 201
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 52, 46

Conread position: 116-280
Cow position: chr16:39818526-39818692 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 133
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 97, 0

Conread position: 116-357
Cow position: chr16:23982213-23982459 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 196, 0

Conread position: 117-273
Cow position: chr16:5483419-5483265 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 118
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 83, 0

Conread position: 119-542
Cow position: chr16:52815710-52815274 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 293
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 246, 66

Conread position: 201-366
Cow position: chr16:2411983-2411813 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 132
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 111, 0

Conread position: 212-665
Cow position: chr16:10808167-10808633 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 26

Conread position: 244-665
Cow position: chr16:36362318-36361879 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 111

Conread position: 356-665
Cow position: chr16:25187814-25188125 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 78

Conread position: 358-665
Cow position: chr16:2239559-2239249 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 39

Conread position: 358-665
Cow position: chr16:34529500-34529804 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 63

Conread position: 362-648
Cow position: chr16:5483500-5483792 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 72

Conread position: 362-648
Cow position: chr16:27734626-27734333 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 72

Conread position: 362-665
Cow position: chr16:12538746-12538441 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 72

Conread position: 362-665
Cow position: chr16:15183981-15184286 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 72

Conread position: 362-665
Cow position: chr16:15491886-15492192 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 72

Conread position: 362-665
Cow position: chr16:29046199-29046505 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 72

Conread position: 362-665
Cow position: chr16:31592727-31592421 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 70

Conread position: 363-555
Cow position: chr16:29676126-29675934 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 148
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 95, 53

Conread position: 363-664
Cow position: chr16:25084802-25085103 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 18

Conread position: 363-665
Cow position: chr16:6549342-6549041 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 18

Conread position: 363-665
Cow position: chr16:8816926-8816621 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 71

Conread position: 363-665
Cow position: chr16:20255131-20254828 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 71

Conread position: 366-665
Cow position: chr16:25341150-25341448 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 68

Conread position: 367-648
Cow position: chr16:43898085-43897799 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 66

Conread position: 374-665
Cow position: chr16:36282590-36282880 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 218
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 43, 58

Conread position: 393-571
Cow position: chr16:18687912-18687733 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 141
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 65, 28

Show alignments to all cow chromosomes.