Cow genome map

Conread name: Ova1-OVRM10078G07

Conread position: 1-650
Cow position: chr17:14893528-14894202 (view UCSC Genome Browser custom track)
Alignm length: 693
Alignm identity: 461
Alignm E-value: 0
Alignm gaps (pig, cow): 230, 89

Conread position: 4-242
Cow position: chr17:31768904-31768666 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 159
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 32, 21

Conread position: 7-278
Cow position: chr17:180992-181257 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 149
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 30, 80

Conread position: 7-356
Cow position: chr17:249297-249638 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 218

Conread position: 7-357
Cow position: chr17:2578934-2579283 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 19

Conread position: 7-357
Cow position: chr17:19269977-19269642 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 251
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 29, 84

Conread position: 7-361
Cow position: chr17:8208478-8208835 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 219

Conread position: 7-361
Cow position: chr17:14217657-14217296 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 0

Conread position: 7-361
Cow position: chr17:22160284-22160644 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 0

Conread position: 7-402
Cow position: chr17:11782739-11783141 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 0

Conread position: 7-402
Cow position: chr17:15157583-15157191 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 64

Conread position: 7-409
Cow position: chr17:1383443-1383037 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 0

Conread position: 7-409
Cow position: chr17:2249211-2248804 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 69

Conread position: 7-409
Cow position: chr17:20666352-20665949 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 61

Conread position: 7-409
Cow position: chr17:43987888-43988312 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 276
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 29, 0

Conread position: 7-665
Cow position: chr17:9654081-9653395 (view UCSC Genome Browser custom track)
Alignm length: 691
Alignm identity: 482
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 452

Conread position: 7-665
Cow position: chr17:15143992-15143306 (view UCSC Genome Browser custom track)
Alignm length: 700
Alignm identity: 472
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 145

Conread position: 7-665
Cow position: chr17:24780420-24781109 (view UCSC Genome Browser custom track)
Alignm length: 700
Alignm identity: 476
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 78

Conread position: 8-292
Cow position: chr17:6119520-6119805 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 201
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 28, 0

Conread position: 8-350
Cow position: chr17:40803762-40804116 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 19

Conread position: 8-357
Cow position: chr17:3643466-3643112 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 19

Conread position: 8-357
Cow position: chr17:16860199-16859832 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 255
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 28, 34

Conread position: 8-357
Cow position: chr17:18104311-18103956 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 0

Conread position: 8-368
Cow position: chr17:20401042-20401418 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 256
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 63, 43

Conread position: 9-655
Cow position: chr17:13929045-13929722 (view UCSC Genome Browser custom track)
Alignm length: 686
Alignm identity: 475
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 41

Conread position: 10-349
Cow position: chr17:4081027-4081367 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 25

Conread position: 15-402
Cow position: chr17:24633333-24633724 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 191

Conread position: 32-323
Cow position: chr17:6259102-6259386 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 0

Conread position: 32-648
Cow position: chr17:4059501-4060147 (view UCSC Genome Browser custom track)
Alignm length: 651
Alignm identity: 456
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 353

Conread position: 37-361
Cow position: chr17:2261516-2261838 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 275, 161

Conread position: 37-580
Cow position: chr17:15322230-15322788 (view UCSC Genome Browser custom track)
Alignm length: 563
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 328, 278

Conread position: 46-291
Cow position: chr17:18302358-18302120 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 162
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 37, 0

Conread position: 47-297
Cow position: chr17:12670926-12670679 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 171
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 92, 156

Conread position: 48-640
Cow position: chr17:153041-152433 (view UCSC Genome Browser custom track)
Alignm length: 630
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 45

Conread position: 53-636
Cow position: chr17:31200651-31200068 (view UCSC Genome Browser custom track)
Alignm length: 585
Alignm identity: 186
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 166, 261

Conread position: 53-648
Cow position: chr17:4294812-4295392 (view UCSC Genome Browser custom track)
Alignm length: 615
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 313, 76

Conread position: 59-361
Cow position: chr17:228874-228573 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 214
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 175, 114

Conread position: 59-652
Cow position: chr17:2146642-2147221 (view UCSC Genome Browser custom track)
Alignm length: 607
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 169, 34

Conread position: 61-311
Cow position: chr17:55256-55009 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 185
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 32, 18

Conread position: 62-665
Cow position: chr17:25737088-25737724 (view UCSC Genome Browser custom track)
Alignm length: 641
Alignm identity: 456
Alignm E-value: 0
Alignm gaps (pig, cow): 250, 237

Conread position: 70-357
Cow position: chr17:11088289-11088000 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 155

Conread position: 74-361
Cow position: chr17:19609463-19609180 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 200
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 49, 37

Conread position: 74-374
Cow position: chr17:23857611-23857294 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 22

Conread position: 81-323
Cow position: chr17:22131384-22131626 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 181
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 135, 233

Conread position: 81-541
Cow position: chr17:1284313-1283848 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 226, 97

Conread position: 84-357
Cow position: chr17:14326051-14325770 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 0

Conread position: 84-661
Cow position: chr17:15435241-15435848 (view UCSC Genome Browser custom track)
Alignm length: 613
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 204

Conread position: 86-665
Cow position: chr17:15370531-15371111 (view UCSC Genome Browser custom track)
Alignm length: 595
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 226, 7

Conread position: 93-258
Cow position: chr17:1945634-1945798 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 124
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 123, 18

Conread position: 94-350
Cow position: chr17:32024737-32024479 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 213, 17

Conread position: 94-366
Cow position: chr17:22430020-22429749 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 213, 5

Conread position: 97-664
Cow position: chr17:39933147-39933715 (view UCSC Genome Browser custom track)
Alignm length: 586
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 152

Conread position: 102-307
Cow position: chr17:2286841-2287046 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 158
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 0, 0

Conread position: 102-361
Cow position: chr17:16889595-16889853 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 63

Conread position: 111-358
Cow position: chr17:28109569-28109811 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 189
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 201, 88

Conread position: 112-348
Cow position: chr17:13857299-13857058 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 187
Alignm E-value: 0
Alignm gaps (pig, cow): 200, 0

Conread position: 112-361
Cow position: chr17:27345282-27345533 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 192, 155

Conread position: 112-368
Cow position: chr17:6002539-6002276 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 182
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 100, 165

Conread position: 112-374
Cow position: chr17:44853449-44853194 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 192
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 34, 0

Conread position: 115-367
Cow position: chr17:35591702-35591949 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 188
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 190, 34

Conread position: 140-320
Cow position: chr17:20088253-20088070 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 144
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 90, 0

Conread position: 155-409
Cow position: chr17:6089644-6089384 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 180
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 157, 0

Conread position: 157-357
Cow position: chr17:2173401-2173603 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 154
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 155, 80

Conread position: 160-357
Cow position: chr17:15849922-15850122 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 146
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 10, 26

Conread position: 164-357
Cow position: chr17:2737905-2738102 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 151
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 148, 70

Conread position: 169-357
Cow position: chr17:1879623-1879816 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 140
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 122, 0

Conread position: 224-374
Cow position: chr17:20183640-20183487 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 123
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 28, 143

Conread position: 229-665
Cow position: chr17:23324850-23324393 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 224

Conread position: 313-665
Cow position: chr17:23857327-23856973 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 17

Conread position: 356-664
Cow position: chr17:6089412-6089101 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 295

Conread position: 356-665
Cow position: chr17:2555872-2556183 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 78

Conread position: 356-665
Cow position: chr17:20665977-20665665 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 78

Conread position: 358-665
Cow position: chr17:228550-228247 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 8

Conread position: 358-665
Cow position: chr17:2261861-2262167 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 226
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 63, 48

Conread position: 358-665
Cow position: chr17:8208858-8209167 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 76

Conread position: 362-648
Cow position: chr17:3643081-3642789 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 72

Conread position: 362-648
Cow position: chr17:11087969-11087677 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 73

Conread position: 362-648
Cow position: chr17:19269611-19269319 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 72

Conread position: 362-665
Cow position: chr17:6259600-6259906 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 72

Conread position: 362-665
Cow position: chr17:13857014-13856708 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 72

Conread position: 362-665
Cow position: chr17:35591970-35592274 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 70

Conread position: 363-665
Cow position: chr17:2248825-2248523 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 71

Conread position: 363-665
Cow position: chr17:18027001-18026696 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 69

Conread position: 363-665
Cow position: chr17:20183471-20183170 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 18

Conread position: 367-665
Cow position: chr17:1879852-1880155 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 67

Conread position: 367-665
Cow position: chr17:1946738-1947031 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 49

Conread position: 367-665
Cow position: chr17:14217264-14216962 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 67

Conread position: 367-665
Cow position: chr17:16889885-16890185 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 14

Conread position: 367-665
Cow position: chr17:18103920-18103619 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 67

Conread position: 367-665
Cow position: chr17:43988295-43988594 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 67

Conread position: 382-648
Cow position: chr17:15157188-15156917 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 52

Conread position: 382-665
Cow position: chr17:1383039-1382753 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 269

Conread position: 432-647
Cow position: chr17:2579457-2579671 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 160
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 42, 0

Conread position: 474-665
Cow position: chr17:40804689-40804877 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 155
Alignm E-value: 0
Alignm gaps (pig, cow): 171, 0

Conread position: 500-648
Cow position: chr17:6068534-6068676 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 109
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 35, 0

Conread position: 520-665
Cow position: chr17:26205888-26205746 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 112
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 125, 0

Show alignments to all cow chromosomes.