Cow genome map
| Conread name: | Ova1-OVRM10078G07 |
| Conread position: | 3-361 |
| Cow position: | chr18:33335450-33335804 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 73 |
| Conread position: | 7-244 |
| Cow position: | chr18:23746396-23746158 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 7-260 |
| Cow position: | chr18:29236355-29236609 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 7-357 |
| Cow position: | chr18:25349618-25349971 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 305, 19 |
| Conread position: | 7-361 |
| Cow position: | chr18:16078281-16078635 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 104 |
| Conread position: | 7-361 |
| Cow position: | chr18:19351953-19352322 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 7-361 |
| Cow position: | chr18:33953994-33953631 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 252 |
| Conread position: | 7-361 |
| Cow position: | chr18:44621334-44621695 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 70 |
| Conread position: | 7-361 |
| Cow position: | chr18:55089348-55088989 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 45 |
| Conread position: | 7-392 |
| Cow position: | chr18:16660421-16660037 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 105 |
| Conread position: | 7-409 |
| Cow position: | chr18:51660003-51660402 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 71 |
| Conread position: | 7-665 |
| Cow position: | chr18:47741594-47742287 (view UCSC Genome Browser custom track) |
| Alignm length: | 701 |
| Alignm identity: | 466 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 252 |
| Conread position: | 8-320 |
| Cow position: | chr18:14129872-14130183 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 150 |
| Conread position: | 8-320 |
| Cow position: | chr18:23797228-23797540 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 306 |
| Conread position: | 8-345 |
| Cow position: | chr18:37504643-37504983 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 19 |
| Conread position: | 8-357 |
| Cow position: | chr18:36507910-36508265 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 8-357 |
| Cow position: | chr18:41841248-41840893 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 8-357 |
| Cow position: | chr18:51480417-51480769 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 8-665 |
| Cow position: | chr18:16177029-16176345 (view UCSC Genome Browser custom track) |
| Alignm length: | 689 |
| Alignm identity: | 478 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 333 |
| Conread position: | 8-665 |
| Cow position: | chr18:27838720-27838047 (view UCSC Genome Browser custom track) |
| Alignm length: | 685 |
| Alignm identity: | 494 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 83 |
| Conread position: | 10-347 |
| Cow position: | chr18:45958288-45958613 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 232 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 301, 26 |
| Conread position: | 10-367 |
| Cow position: | chr18:28974318-28973961 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 100 |
| Conread position: | 13-661 |
| Cow position: | chr18:11275507-11274841 (view UCSC Genome Browser custom track) |
| Alignm length: | 683 |
| Alignm identity: | 480 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 187 |
| Conread position: | 15-357 |
| Cow position: | chr18:54024771-54024427 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 229 |
| Conread position: | 15-409 |
| Cow position: | chr18:37586079-37585679 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 343 |
| Conread position: | 36-286 |
| Cow position: | chr18:42244937-42244699 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 210, 8 |
| Conread position: | 37-395 |
| Cow position: | chr18:54002111-54002462 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 220 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 282, 131 |
| Conread position: | 39-366 |
| Cow position: | chr18:9187152-9186824 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 56, 41 |
| Conread position: | 46-665 |
| Cow position: | chr18:14415596-14416245 (view UCSC Genome Browser custom track) |
| Alignm length: | 656 |
| Alignm identity: | 467 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 17 |
| Conread position: | 46-665 |
| Cow position: | chr18:37599913-37599273 (view UCSC Genome Browser custom track) |
| Alignm length: | 654 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 19 |
| Conread position: | 57-665 |
| Cow position: | chr18:54172216-54171591 (view UCSC Genome Browser custom track) |
| Alignm length: | 633 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 92 |
| Conread position: | 81-360 |
| Cow position: | chr18:23944720-23944437 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 276 |
| Conread position: | 81-366 |
| Cow position: | chr18:43147274-43146983 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 0 |
| Conread position: | 88-342 |
| Cow position: | chr18:51310246-51310503 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 219, 14 |
| Conread position: | 90-665 |
| Cow position: | chr18:47719909-47719315 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 452 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 318 |
| Conread position: | 94-356 |
| Cow position: | chr18:33358529-33358798 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 94-361 |
| Cow position: | chr18:48221543-48221813 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 213, 52 |
| Conread position: | 101-402 |
| Cow position: | chr18:22602158-22602465 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 104 |
| Conread position: | 101-636 |
| Cow position: | chr18:37598428-37597899 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 341 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 160, 67 |
| Conread position: | 112-357 |
| Cow position: | chr18:40478067-40478315 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 187 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 200, 74 |
| Conread position: | 112-358 |
| Cow position: | chr18:17992879-17992629 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 183 |
| Conread position: | 112-361 |
| Cow position: | chr18:32293459-32293711 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 197, 99 |
| Conread position: | 112-361 |
| Cow position: | chr18:39748266-39748514 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 200, 34 |
| Conread position: | 112-615 |
| Cow position: | chr18:1520810-1521350 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 114 |
| Conread position: | 112-665 |
| Cow position: | chr18:33268526-33269094 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 196, 48 |
| Conread position: | 113-361 |
| Cow position: | chr18:2019996-2019750 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 125 |
| Conread position: | 115-665 |
| Cow position: | chr18:35335170-35335748 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 342 |
| Conread position: | 115-665 |
| Cow position: | chr18:51257668-51258252 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 192, 342 |
| Conread position: | 116-357 |
| Cow position: | chr18:32651682-32651927 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 180, 198 |
| Conread position: | 123-357 |
| Cow position: | chr18:27986722-27986960 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 180, 0 |
| Conread position: | 138-358 |
| Cow position: | chr18:19540162-19539940 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 170, 51 |
| Conread position: | 148-361 |
| Cow position: | chr18:51464751-51464539 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 176, 26 |
| Conread position: | 148-418 |
| Cow position: | chr18:51610726-51611008 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 194 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 163, 26 |
| Conread position: | 211-357 |
| Cow position: | chr18:16533769-16533911 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 98, 21 |
| Conread position: | 218-361 |
| Cow position: | chr18:6869467-6869322 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 240-665 |
| Cow position: | chr18:53785652-53786108 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 9 |
| Conread position: | 356-648 |
| Cow position: | chr18:33953611-33953314 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 78 |
| Conread position: | 356-665 |
| Cow position: | chr18:29236770-29237077 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 29 |
| Conread position: | 356-665 |
| Cow position: | chr18:51689583-51689893 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 78 |
| Conread position: | 358-665 |
| Cow position: | chr18:19352345-19352654 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 29 |
| Conread position: | 358-665 |
| Cow position: | chr18:51341645-51341955 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 76 |
| Conread position: | 362-665 |
| Cow position: | chr18:14130352-14130653 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 73 |
| Conread position: | 362-665 |
| Cow position: | chr18:23797612-23797916 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 19 |
| Conread position: | 362-665 |
| Cow position: | chr18:28973940-28973634 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 72 |
| Conread position: | 362-665 |
| Cow position: | chr18:36508296-36508601 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 72 |
| Conread position: | 362-665 |
| Cow position: | chr18:40478350-40478652 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 72 |
| Conread position: | 362-665 |
| Cow position: | chr18:41840862-41840556 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 72 |
| Conread position: | 362-665 |
| Cow position: | chr18:48221840-48222147 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 72 |
| Conread position: | 362-665 |
| Cow position: | chr18:51480800-51481108 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 73 |
| Conread position: | 363-621 |
| Cow position: | chr18:16660041-16659791 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 53, 69 |
| Conread position: | 363-665 |
| Cow position: | chr18:6869293-6868990 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 71 |
| Conread position: | 363-665 |
| Cow position: | chr18:16533943-16534247 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 69 |
| Conread position: | 363-665 |
| Cow position: | chr18:33358831-33359134 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 71 |
| Conread position: | 363-665 |
| Cow position: | chr18:43146960-43146657 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 18 |
| Conread position: | 367-648 |
| Cow position: | chr18:2019718-2019430 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 67 |
| Conread position: | 367-665 |
| Cow position: | chr18:55088957-55088656 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 67 |
| Conread position: | 368-617 |
| Cow position: | chr18:54044732-54044483 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 184 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 53, 13 |
| Conread position: | 383-648 |
| Cow position: | chr18:54024375-54024105 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 51 |
| Conread position: | 408-665 |
| Cow position: | chr18:25350673-25350934 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 23 |
| Conread position: | 411-648 |
| Cow position: | chr18:51463062-51462823 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 177 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 49, 22 |
| Conread position: | 411-665 |
| Cow position: | chr18:24040721-24040464 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 23 |
| Conread position: | 421-665 |
| Cow position: | chr18:19539557-19539311 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 184 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 39, 12 |
| Conread position: | 428-665 |
| Cow position: | chr18:16078748-16078986 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 182 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 6, 221 |
| Conread position: | 440-665 |
| Cow position: | chr18:32652267-32652488 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 461-665 |
| Cow position: | chr18:16843268-16843069 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 163 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 518-665 |
| Cow position: | chr18:27987185-27987329 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 127, 0 |
Show alignments to all cow chromosomes.