Cow genome map
| Conread name: | Ova1-OVRM10078G07 |
| Conread position: | 2-247 |
| Cow position: | chr19:27053243-27053013 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 12, 84 |
| Conread position: | 4-357 |
| Cow position: | chr19:261014-261372 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 11 |
| Conread position: | 5-611 |
| Cow position: | chr19:378295-377680 (view UCSC Genome Browser custom track) |
| Alignm length: | 633 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 84 |
| Conread position: | 6-665 |
| Cow position: | chr19:76651-75996 (view UCSC Genome Browser custom track) |
| Alignm length: | 668 |
| Alignm identity: | 472 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 78 |
| Conread position: | 7-361 |
| Cow position: | chr19:28592870-28593217 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 250 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 29, 78 |
| Conread position: | 7-361 |
| Cow position: | chr19:43143299-43143656 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 77 |
| Conread position: | 7-409 |
| Cow position: | chr19:685433-685832 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 194 |
| Conread position: | 7-409 |
| Cow position: | chr19:32193164-32193566 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 67 |
| Conread position: | 7-409 |
| Cow position: | chr19:32244252-32244673 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 282 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 7-561 |
| Cow position: | chr19:547972-548536 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 29 |
| Conread position: | 7-665 |
| Cow position: | chr19:37487-38168 (view UCSC Genome Browser custom track) |
| Alignm length: | 695 |
| Alignm identity: | 484 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 193 |
| Conread position: | 7-665 |
| Cow position: | chr19:772192-772872 (view UCSC Genome Browser custom track) |
| Alignm length: | 690 |
| Alignm identity: | 470 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 64 |
| Conread position: | 7-665 |
| Cow position: | chr19:7341652-7342341 (view UCSC Genome Browser custom track) |
| Alignm length: | 694 |
| Alignm identity: | 490 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 453 |
| Conread position: | 7-665 |
| Cow position: | chr19:32212480-32211800 (view UCSC Genome Browser custom track) |
| Alignm length: | 692 |
| Alignm identity: | 478 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 192 |
| Conread position: | 8-304 |
| Cow position: | chr19:33872825-33873117 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 190 |
| Conread position: | 8-357 |
| Cow position: | chr19:28582054-28581718 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 249 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 14, 73 |
| Conread position: | 8-357 |
| Cow position: | chr19:33941195-33941548 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 76 |
| Conread position: | 8-361 |
| Cow position: | chr19:55078331-55078686 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 85 |
| Conread position: | 8-369 |
| Cow position: | chr19:35376147-35376505 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 249 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 20, 10 |
| Conread position: | 8-643 |
| Cow position: | chr19:32223825-32223195 (view UCSC Genome Browser custom track) |
| Alignm length: | 658 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 38 |
| Conread position: | 8-648 |
| Cow position: | chr19:39390108-39390767 (view UCSC Genome Browser custom track) |
| Alignm length: | 667 |
| Alignm identity: | 461 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 84 |
| Conread position: | 8-665 |
| Cow position: | chr19:10672725-10672033 (view UCSC Genome Browser custom track) |
| Alignm length: | 696 |
| Alignm identity: | 498 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 675 |
| Conread position: | 9-665 |
| Cow position: | chr19:40852848-40852165 (view UCSC Genome Browser custom track) |
| Alignm length: | 687 |
| Alignm identity: | 495 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 666 |
| Conread position: | 14-361 |
| Cow position: | chr19:52152660-52152321 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 248 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 22, 60 |
| Conread position: | 32-367 |
| Cow position: | chr19:203569-203909 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 172 |
| Conread position: | 32-665 |
| Cow position: | chr19:171817-172484 (view UCSC Genome Browser custom track) |
| Alignm length: | 671 |
| Alignm identity: | 474 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 280, 648 |
| Conread position: | 39-613 |
| Cow position: | chr19:34040-34640 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 176, 36 |
| Conread position: | 43-260 |
| Cow position: | chr19:544273-544056 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 163 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 45-665 |
| Cow position: | chr19:40888026-40887383 (view UCSC Genome Browser custom track) |
| Alignm length: | 655 |
| Alignm identity: | 464 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 130 |
| Conread position: | 46-371 |
| Cow position: | chr19:30754797-30755128 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 166, 65 |
| Conread position: | 55-561 |
| Cow position: | chr19:32183815-32183290 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 339 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 67, 56 |
| Conread position: | 59-367 |
| Cow position: | chr19:4385121-4385431 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 253, 60 |
| Conread position: | 76-330 |
| Cow position: | chr19:36477011-36477263 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 175 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 236, 142 |
| Conread position: | 76-357 |
| Cow position: | chr19:439996-439707 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 209 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 237, 0 |
| Conread position: | 77-319 |
| Cow position: | chr19:6553059-6553286 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 80-643 |
| Cow position: | chr19:42649411-42648858 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 242, 104 |
| Conread position: | 81-322 |
| Cow position: | chr19:350919-350669 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 134, 99 |
| Conread position: | 81-363 |
| Cow position: | chr19:31341379-31341648 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 209 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 236, 65 |
| Conread position: | 83-373 |
| Cow position: | chr19:35978925-35979218 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 30, 26 |
| Conread position: | 86-588 |
| Cow position: | chr19:20125294-20125802 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 47 |
| Conread position: | 87-364 |
| Cow position: | chr19:29209227-29209504 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 191 |
| Conread position: | 90-363 |
| Cow position: | chr19:32238191-32237915 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 212 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 217, 52 |
| Conread position: | 93-272 |
| Cow position: | chr19:801659-801838 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 175, 9 |
| Conread position: | 94-366 |
| Cow position: | chr19:4252689-4252413 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 0 |
| Conread position: | 102-361 |
| Cow position: | chr19:416325-416593 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 202 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 114, 58 |
| Conread position: | 102-363 |
| Cow position: | chr19:30371952-30372223 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 207 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 84, 74 |
| Conread position: | 102-518 |
| Cow position: | chr19:4533067-4532625 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 150 |
| Conread position: | 102-665 |
| Cow position: | chr19:171067-170474 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 499 |
| Conread position: | 111-554 |
| Cow position: | chr19:20111540-20111071 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 294 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 11, 381 |
| Conread position: | 112-349 |
| Cow position: | chr19:7487999-7488241 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 199, 0 |
| Conread position: | 112-665 |
| Cow position: | chr19:39688236-39688800 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 196, 89 |
| Conread position: | 115-357 |
| Cow position: | chr19:32665222-32665466 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 233 |
| Conread position: | 115-665 |
| Cow position: | chr19:1031803-1032348 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 204, 84 |
| Conread position: | 121-276 |
| Cow position: | chr19:25622722-25622567 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 146-361 |
| Cow position: | chr19:39546358-39546564 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 162, 18 |
| Conread position: | 180-665 |
| Cow position: | chr19:893848-893342 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 59 |
| Conread position: | 311-665 |
| Cow position: | chr19:33873346-33873699 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 12 |
| Conread position: | 356-664 |
| Cow position: | chr19:32244645-32244956 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 78 |
| Conread position: | 356-665 |
| Cow position: | chr19:43143677-43143989 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 78 |
| Conread position: | 358-660 |
| Cow position: | chr19:28593240-28593549 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 76 |
| Conread position: | 361-535 |
| Cow position: | chr19:27052803-27052623 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 136 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 60, 73 |
| Conread position: | 362-650 |
| Cow position: | chr19:7488280-7488574 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 72 |
| Conread position: | 362-651 |
| Cow position: | chr19:39546595-39546885 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 72 |
| Conread position: | 363-551 |
| Cow position: | chr19:29209529-29209721 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 54, 69 |
| Conread position: | 363-626 |
| Cow position: | chr19:30372250-30372511 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 197 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 54, 69 |
| Conread position: | 363-665 |
| Cow position: | chr19:203931-204234 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 11 |
| Conread position: | 363-665 |
| Cow position: | chr19:416621-416934 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 123 |
| Conread position: | 363-665 |
| Cow position: | chr19:32665498-32665798 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 71 |
| Conread position: | 367-665 |
| Cow position: | chr19:350311-350018 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 218 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 65, 53 |
| Conread position: | 383-648 |
| Cow position: | chr19:35376785-35377044 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 397-665 |
| Cow position: | chr19:20104716-20104986 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 9 |
| Conread position: | 431-642 |
| Cow position: | chr19:2274338-2274125 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 162 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 446-643 |
| Cow position: | chr19:352936-352739 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 152 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.