Cow genome map

Conread name: Ova1-OVRM10078G07

Conread position: 3-357
Cow position: chr20:10103007-10102656 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 109

Conread position: 3-357
Cow position: chr20:15064295-15064662 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 73

Conread position: 4-374
Cow position: chr20:21393109-21393479 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 18

Conread position: 5-606
Cow position: chr20:2791812-2791180 (view UCSC Genome Browser custom track)
Alignm length: 639
Alignm identity: 402
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 9, 56

Conread position: 6-361
Cow position: chr20:11276735-11276399 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 70

Conread position: 7-297
Cow position: chr20:29947722-29948014 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 0

Conread position: 7-307
Cow position: chr20:31123943-31124244 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 203
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 29, 0

Conread position: 7-311
Cow position: chr20:822295-822593 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 216
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 29, 192

Conread position: 7-350
Cow position: chr20:23798420-23798768 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 208

Conread position: 7-665
Cow position: chr20:19437502-19438177 (view UCSC Genome Browser custom track)
Alignm length: 689
Alignm identity: 484
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 192

Conread position: 8-323
Cow position: chr20:8004974-8004659 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 110

Conread position: 8-357
Cow position: chr20:5534486-5534832 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 83

Conread position: 8-357
Cow position: chr20:13762448-13762795 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 84

Conread position: 8-357
Cow position: chr20:21913877-21914219 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 19

Conread position: 8-357
Cow position: chr20:23470122-23469766 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 0

Conread position: 8-357
Cow position: chr20:27868736-27869090 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 151

Conread position: 8-613
Cow position: chr20:30683877-30684516 (view UCSC Genome Browser custom track)
Alignm length: 640
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 0

Conread position: 8-665
Cow position: chr20:15291586-15292240 (view UCSC Genome Browser custom track)
Alignm length: 666
Alignm identity: 474
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 263

Conread position: 8-665
Cow position: chr20:25851447-25850761 (view UCSC Genome Browser custom track)
Alignm length: 695
Alignm identity: 494
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 84

Conread position: 9-255
Cow position: chr20:35118791-35119033 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 183
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 27, 82

Conread position: 11-648
Cow position: chr20:37578996-37579655 (view UCSC Genome Browser custom track)
Alignm length: 669
Alignm identity: 419
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 6, 12

Conread position: 18-374
Cow position: chr20:22206083-22206457 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 251
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 10, 68

Conread position: 32-500
Cow position: chr20:7116907-7116434 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 276, 337

Conread position: 46-368
Cow position: chr20:2676698-2677021 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 213
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 166, 43

Conread position: 46-648
Cow position: chr20:20905604-20904995 (view UCSC Genome Browser custom track)
Alignm length: 624
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 262, 187

Conread position: 48-373
Cow position: chr20:29572609-29572279 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 220
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 30, 42

Conread position: 51-361
Cow position: chr20:5483779-5484089 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 256, 18

Conread position: 52-654
Cow position: chr20:31379285-31378663 (view UCSC Genome Browser custom track)
Alignm length: 630
Alignm identity: 389
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 110, 57

Conread position: 53-357
Cow position: chr20:12439176-12438868 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 67

Conread position: 54-358
Cow position: chr20:22718092-22717801 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 205
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 63, 29

Conread position: 57-613
Cow position: chr20:18315993-18315414 (view UCSC Genome Browser custom track)
Alignm length: 587
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 29

Conread position: 79-654
Cow position: chr20:28475948-28476521 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 380
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 34, 25

Conread position: 81-367
Cow position: chr20:3252527-3252230 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 211
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 149, 0

Conread position: 91-361
Cow position: chr20:4800021-4799754 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 0

Conread position: 94-665
Cow position: chr20:10846450-10845892 (view UCSC Genome Browser custom track)
Alignm length: 584
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 210, 66

Conread position: 94-665
Cow position: chr20:28160406-28161000 (view UCSC Genome Browser custom track)
Alignm length: 604
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 219, 499

Conread position: 96-665
Cow position: chr20:15098241-15097647 (view UCSC Genome Browser custom track)
Alignm length: 602
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 119

Conread position: 98-664
Cow position: chr20:5561086-5560486 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 160

Conread position: 100-374
Cow position: chr20:24516502-24516776 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 185
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 13, 9

Conread position: 102-665
Cow position: chr20:24614183-24614765 (view UCSC Genome Browser custom track)
Alignm length: 587
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 210, 332

Conread position: 103-665
Cow position: chr20:8313796-8313210 (view UCSC Genome Browser custom track)
Alignm length: 595
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 32

Conread position: 112-320
Cow position: chr20:28565957-28565750 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 161
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 199, 0

Conread position: 112-361
Cow position: chr20:28593394-28593645 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 185
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 196, 43

Conread position: 113-361
Cow position: chr20:3270367-3270608 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 208, 127

Conread position: 115-239
Cow position: chr20:19005980-19005859 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 99
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 84, 0

Conread position: 115-361
Cow position: chr20:3032584-3032826 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 22

Conread position: 123-648
Cow position: chr20:9954301-9953770 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 96

Conread position: 142-648
Cow position: chr20:13435232-13434735 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 328
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 11, 21

Conread position: 202-357
Cow position: chr20:35119058-35119218 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 122
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 110, 0

Conread position: 214-409
Cow position: chr20:19192383-19192182 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 145
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 90, 0

Conread position: 217-654
Cow position: chr20:13782470-13782916 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 279
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 166, 92

Conread position: 234-409
Cow position: chr20:11679345-11679164 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 129
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 78, 0

Conread position: 289-665
Cow position: chr20:29948338-29948729 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 157

Conread position: 355-530
Cow position: chr20:10102633-10102461 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 130
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 5, 78

Conread position: 356-665
Cow position: chr20:25961021-25961333 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 78

Conread position: 362-648
Cow position: chr20:23469735-23469450 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 72

Conread position: 362-648
Cow position: chr20:23798806-23799102 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 45

Conread position: 362-665
Cow position: chr20:5534863-5535167 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 71

Conread position: 362-665
Cow position: chr20:8004301-8003996 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 73

Conread position: 362-665
Cow position: chr20:12438837-12438531 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 72

Conread position: 362-665
Cow position: chr20:13762826-13763134 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 72

Conread position: 362-665
Cow position: chr20:21914250-21914558 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 70

Conread position: 362-665
Cow position: chr20:27869121-27869427 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 72

Conread position: 362-665
Cow position: chr20:35119497-35119800 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 219
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 59, 72

Conread position: 363-529
Cow position: chr20:4799726-4799554 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 126
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 54, 69

Conread position: 363-648
Cow position: chr20:28565671-28565380 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 71

Conread position: 363-665
Cow position: chr20:822692-822997 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 71

Conread position: 363-665
Cow position: chr20:5484117-5484419 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 18

Conread position: 363-665
Cow position: chr20:15947468-15947150 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 234
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 58, 71

Conread position: 379-665
Cow position: chr20:7116528-7116239 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 275

Conread position: 382-665
Cow position: chr20:3033006-3033291 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 21

Conread position: 420-648
Cow position: chr20:28463462-28463690 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 156
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 55, 148

Conread position: 502-648
Cow position: chr20:35104562-35104414 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 113
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 92, 0

Show alignments to all cow chromosomes.