Cow genome map

Conread name: Ova1-OVRM10078G07

Conread position: 1-357
Cow position: chr21:358684-359029 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 256
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 20, 27

Conread position: 3-240
Cow position: chr21:41952843-41953073 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 178
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 33, 13

Conread position: 3-665
Cow position: chr21:4183200-4183867 (view UCSC Genome Browser custom track)
Alignm length: 689
Alignm identity: 482
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 68

Conread position: 4-357
Cow position: chr21:2769794-2769449 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 252
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 32, 72

Conread position: 5-368
Cow position: chr21:23704698-23705054 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 232
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 57, 16

Conread position: 7-232
Cow position: chr21:2454375-2454600 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 152
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 29, 196

Conread position: 7-244
Cow position: chr21:19609772-19610010 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 170
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 29, 0

Conread position: 7-350
Cow position: chr21:5016370-5016023 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 242
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 29, 61

Conread position: 7-361
Cow position: chr21:2510313-2510668 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 140

Conread position: 7-361
Cow position: chr21:17572586-17572937 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 243
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 31, 140

Conread position: 7-361
Cow position: chr21:47947770-47948125 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 247
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 29, 108

Conread position: 7-366
Cow position: chr21:11505244-11505608 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 40

Conread position: 7-381
Cow position: chr21:4090305-4090687 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 0

Conread position: 7-409
Cow position: chr21:12056334-12055935 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 312, 22

Conread position: 7-409
Cow position: chr21:26819357-26818956 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 219

Conread position: 7-409
Cow position: chr21:27708418-27708827 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 0

Conread position: 7-409
Cow position: chr21:28529886-28529479 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 213

Conread position: 7-665
Cow position: chr21:2415901-2416574 (view UCSC Genome Browser custom track)
Alignm length: 690
Alignm identity: 475
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 159

Conread position: 7-665
Cow position: chr21:2884079-2883399 (view UCSC Genome Browser custom track)
Alignm length: 685
Alignm identity: 496
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 444

Conread position: 7-665
Cow position: chr21:26638800-26638116 (view UCSC Genome Browser custom track)
Alignm length: 693
Alignm identity: 471
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 245

Conread position: 7-665
Cow position: chr21:37044578-37045259 (view UCSC Genome Browser custom track)
Alignm length: 691
Alignm identity: 446
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 194

Conread position: 7-665
Cow position: chr21:46915248-46915937 (view UCSC Genome Browser custom track)
Alignm length: 697
Alignm identity: 466
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 281

Conread position: 8-349
Cow position: chr21:33251052-33251396 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 45

Conread position: 8-350
Cow position: chr21:40272154-40271815 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 155

Conread position: 8-357
Cow position: chr21:1190699-1191054 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 0

Conread position: 8-357
Cow position: chr21:3778431-3778778 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 83

Conread position: 8-357
Cow position: chr21:10566336-10566686 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 19

Conread position: 8-357
Cow position: chr21:10849737-10850092 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 0

Conread position: 8-648
Cow position: chr21:31559990-31559321 (view UCSC Genome Browser custom track)
Alignm length: 679
Alignm identity: 479
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 208

Conread position: 8-665
Cow position: chr21:48115764-48116450 (view UCSC Genome Browser custom track)
Alignm length: 693
Alignm identity: 475
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 82

Conread position: 10-409
Cow position: chr21:11453994-11453591 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 0

Conread position: 13-665
Cow position: chr21:39424731-39425412 (view UCSC Genome Browser custom track)
Alignm length: 689
Alignm identity: 451
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 240

Conread position: 14-266
Cow position: chr21:39580385-39580638 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 165
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 22, 0

Conread position: 14-648
Cow position: chr21:2476844-2476192 (view UCSC Genome Browser custom track)
Alignm length: 658
Alignm identity: 468
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 71

Conread position: 15-357
Cow position: chr21:145585-145931 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 11

Conread position: 15-665
Cow position: chr21:4590293-4589642 (view UCSC Genome Browser custom track)
Alignm length: 667
Alignm identity: 472
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 104

Conread position: 32-615
Cow position: chr21:7267850-7267242 (view UCSC Genome Browser custom track)
Alignm length: 616
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 177, 114

Conread position: 36-369
Cow position: chr21:21516898-21517226 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 223
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 272, 40

Conread position: 37-665
Cow position: chr21:2501624-2502235 (view UCSC Genome Browser custom track)
Alignm length: 634
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 292

Conread position: 39-362
Cow position: chr21:21948110-21947784 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 221
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 5, 73

Conread position: 42-367
Cow position: chr21:47939170-47939503 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 50

Conread position: 46-236
Cow position: chr21:35089399-35089588 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 137
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 9, 39

Conread position: 46-366
Cow position: chr21:1292478-1292156 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 113

Conread position: 49-361
Cow position: chr21:23860481-23860799 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 222
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 13, 183

Conread position: 51-362
Cow position: chr21:34055213-34054898 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 216
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 9, 116

Conread position: 64-350
Cow position: chr21:30600199-30599915 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 249, 53

Conread position: 81-357
Cow position: chr21:3426217-3426496 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 203
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 157, 65

Conread position: 81-361
Cow position: chr21:2530395-2530110 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 154

Conread position: 81-361
Cow position: chr21:4076578-4076861 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 0

Conread position: 84-570
Cow position: chr21:2716935-2716425 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 224, 132

Conread position: 91-496
Cow position: chr21:3615037-3615440 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 217, 11

Conread position: 94-361
Cow position: chr21:35596125-35596384 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 198
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 215, 140

Conread position: 94-664
Cow position: chr21:23811657-23812223 (view UCSC Genome Browser custom track)
Alignm length: 580
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 220, 41

Conread position: 100-358
Cow position: chr21:25992868-25992614 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 174
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 138, 100

Conread position: 102-361
Cow position: chr21:13124244-13123983 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 56

Conread position: 102-392
Cow position: chr21:4222943-4222639 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 74

Conread position: 112-321
Cow position: chr21:2674875-2674666 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 164
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 112-361
Cow position: chr21:9891375-9891619 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 0

Conread position: 112-366
Cow position: chr21:34292781-34293039 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 195, 0

Conread position: 112-367
Cow position: chr21:21031502-21031758 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 171
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 195, 174

Conread position: 112-589
Cow position: chr21:34259450-34258954 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 262, 194

Conread position: 114-650
Cow position: chr21:30561566-30562139 (view UCSC Genome Browser custom track)
Alignm length: 575
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 198, 254

Conread position: 123-366
Cow position: chr21:2789208-2788970 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 183
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 184, 111

Conread position: 138-374
Cow position: chr21:36714428-36714661 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 164
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 170, 46

Conread position: 214-357
Cow position: chr21:2541552-2541403 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 115
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 10, 0

Conread position: 218-361
Cow position: chr21:27625-27765 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 109
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 23, 0

Conread position: 311-643
Cow position: chr21:2541420-2541082 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 233
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 110, 12

Conread position: 311-665
Cow position: chr21:4222692-4222344 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 12

Conread position: 356-661
Cow position: chr21:8678323-8678015 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 78

Conread position: 356-665
Cow position: chr21:6339603-6339915 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 78

Conread position: 356-665
Cow position: chr21:11453619-11453307 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 295

Conread position: 356-665
Cow position: chr21:12055963-12055652 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 294

Conread position: 358-665
Cow position: chr21:2510691-2511000 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 35

Conread position: 361-608
Cow position: chr21:2769419-2769166 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 72

Conread position: 362-643
Cow position: chr21:10850123-10850410 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 70

Conread position: 362-648
Cow position: chr21:30599877-30599591 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 212
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 59, 72

Conread position: 363-664
Cow position: chr21:3426529-3426834 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 71

Conread position: 363-665
Cow position: chr21:2788947-2788644 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 71

Conread position: 363-665
Cow position: chr21:4076889-4077186 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 222
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 97, 38

Conread position: 367-665
Cow position: chr21:145967-146271 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 71

Conread position: 368-643
Cow position: chr21:35596417-35596698 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 64

Conread position: 368-665
Cow position: chr21:40271628-40271328 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 67

Conread position: 382-665
Cow position: chr21:4090712-4090998 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 52

Conread position: 421-663
Cow position: chr21:18820313-18820081 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 175
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 12, 0

Conread position: 435-654
Cow position: chr21:4086924-4087144 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 156
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 74, 30

Conread position: 490-665
Cow position: chr21:26650218-26650390 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 136
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 155, 0

Conread position: 527-665
Cow position: chr21:3615536-3615660 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 111
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 34, 0

Conread position: 551-665
Cow position: chr21:30226257-30226368 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 94
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 87, 0

Show alignments to all cow chromosomes.