Cow genome map
| Conread name: | Ova1-OVRM10078G07 |
| Conread position: | 1-577 |
| Cow position: | chr24:36296734-36297345 (view UCSC Genome Browser custom track) |
| Alignm length: | 620 |
| Alignm identity: | 387 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 5, 21 |
| Conread position: | 3-357 |
| Cow position: | chr24:12289148-12288801 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 309, 35 |
| Conread position: | 3-357 |
| Cow position: | chr24:13181765-13181423 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 3-620 |
| Cow position: | chr24:14391152-14390511 (view UCSC Genome Browser custom track) |
| Alignm length: | 647 |
| Alignm identity: | 450 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 81 |
| Conread position: | 6-271 |
| Cow position: | chr24:17314742-17314479 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 88 |
| Conread position: | 6-340 |
| Cow position: | chr24:5993404-5993069 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 198 |
| Conread position: | 6-350 |
| Cow position: | chr24:37216299-37216651 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 70 |
| Conread position: | 6-367 |
| Cow position: | chr24:12236632-12236989 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 83 |
| Conread position: | 6-374 |
| Cow position: | chr24:12798178-12797823 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 70 |
| Conread position: | 7-286 |
| Cow position: | chr24:7712722-7712449 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 192 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 29, 173 |
| Conread position: | 7-347 |
| Cow position: | chr24:12114460-12114121 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 310, 222 |
| Conread position: | 7-350 |
| Cow position: | chr24:20267787-20268136 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 7-357 |
| Cow position: | chr24:12224886-12224555 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 243 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 29, 77 |
| Conread position: | 7-358 |
| Cow position: | chr24:6025527-6025169 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 7-361 |
| Cow position: | chr24:6433807-6434170 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 7-361 |
| Cow position: | chr24:6644987-6645344 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 7-361 |
| Cow position: | chr24:7060681-7061031 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 249 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 29, 103 |
| Conread position: | 7-409 |
| Cow position: | chr24:9189161-9188753 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 211 |
| Conread position: | 7-409 |
| Cow position: | chr24:22792745-22793152 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 84 |
| Conread position: | 7-664 |
| Cow position: | chr24:149021-148358 (view UCSC Genome Browser custom track) |
| Alignm length: | 678 |
| Alignm identity: | 478 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 19 |
| Conread position: | 8-164 |
| Cow position: | chr24:9544401-9544554 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 29, 84 |
| Conread position: | 8-343 |
| Cow position: | chr24:29186375-29186712 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 331 |
| Conread position: | 8-357 |
| Cow position: | chr24:19832955-19833306 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 19 |
| Conread position: | 9-647 |
| Cow position: | chr24:6335269-6335930 (view UCSC Genome Browser custom track) |
| Alignm length: | 674 |
| Alignm identity: | 474 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 148 |
| Conread position: | 10-651 |
| Cow position: | chr24:16649731-16649066 (view UCSC Genome Browser custom track) |
| Alignm length: | 675 |
| Alignm identity: | 474 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 240 |
| Conread position: | 12-655 |
| Cow position: | chr24:32330923-32331574 (view UCSC Genome Browser custom track) |
| Alignm length: | 664 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 212, 40 |
| Conread position: | 13-361 |
| Cow position: | chr24:33739767-33739415 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 241 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 23, 249 |
| Conread position: | 15-409 |
| Cow position: | chr24:44017123-44017524 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 76 |
| Conread position: | 15-651 |
| Cow position: | chr24:15392720-15392088 (view UCSC Genome Browser custom track) |
| Alignm length: | 657 |
| Alignm identity: | 465 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 94 |
| Conread position: | 17-374 |
| Cow position: | chr24:6083596-6083959 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 32-344 |
| Cow position: | chr24:4415930-4415611 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 58 |
| Conread position: | 32-647 |
| Cow position: | chr24:12131887-12131239 (view UCSC Genome Browser custom track) |
| Alignm length: | 651 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 278 |
| Conread position: | 32-648 |
| Cow position: | chr24:14385013-14384367 (view UCSC Genome Browser custom track) |
| Alignm length: | 652 |
| Alignm identity: | 450 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 280, 27 |
| Conread position: | 37-358 |
| Cow position: | chr24:16085074-16084734 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 233 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 38-361 |
| Cow position: | chr24:6144961-6145289 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 274, 0 |
| Conread position: | 39-361 |
| Cow position: | chr24:12161487-12161808 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 199, 43 |
| Conread position: | 40-573 |
| Cow position: | chr24:17187151-17187713 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 267, 20 |
| Conread position: | 44-361 |
| Cow position: | chr24:33932975-33933295 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 262, 285 |
| Conread position: | 46-350 |
| Cow position: | chr24:35991038-35990743 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 284, 22 |
| Conread position: | 46-647 |
| Cow position: | chr24:6351802-6352432 (view UCSC Genome Browser custom track) |
| Alignm length: | 631 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 0 |
| Conread position: | 47-331 |
| Cow position: | chr24:38635357-38635634 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 67, 171 |
| Conread position: | 48-369 |
| Cow position: | chr24:6047865-6048191 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 209 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 150, 59 |
| Conread position: | 48-665 |
| Cow position: | chr24:36707471-36708108 (view UCSC Genome Browser custom track) |
| Alignm length: | 652 |
| Alignm identity: | 441 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 108 |
| Conread position: | 52-366 |
| Cow position: | chr24:14873726-14873407 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 8, 37 |
| Conread position: | 53-651 |
| Cow position: | chr24:35841986-35841372 (view UCSC Genome Browser custom track) |
| Alignm length: | 628 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 113 |
| Conread position: | 56-357 |
| Cow position: | chr24:12085823-12086123 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 253, 35 |
| Conread position: | 75-374 |
| Cow position: | chr24:12207783-12208080 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 218 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 140, 8 |
| Conread position: | 77-351 |
| Cow position: | chr24:32125854-32125593 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 206, 103 |
| Conread position: | 83-357 |
| Cow position: | chr24:35838979-35838700 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 215 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 9, 19 |
| Conread position: | 88-409 |
| Cow position: | chr24:13021323-13021646 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 225, 0 |
| Conread position: | 90-647 |
| Cow position: | chr24:1447234-1447803 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 227, 21 |
| Conread position: | 94-227 |
| Cow position: | chr24:11156985-11156851 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 13, 5 |
| Conread position: | 98-361 |
| Cow position: | chr24:13187856-13188114 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 193 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 221, 100 |
| Conread position: | 104-665 |
| Cow position: | chr24:12485650-12485055 (view UCSC Genome Browser custom track) |
| Alignm length: | 602 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 188 |
| Conread position: | 111-361 |
| Cow position: | chr24:36560397-36560154 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 198, 104 |
| Conread position: | 112-277 |
| Cow position: | chr24:14583774-14583937 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 122 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 134, 0 |
| Conread position: | 112-373 |
| Cow position: | chr24:13318913-13319180 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 174 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 137, 122 |
| Conread position: | 115-351 |
| Cow position: | chr24:37301395-37301162 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 100 |
| Conread position: | 120-409 |
| Cow position: | chr24:2635801-2636098 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 201 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 122-347 |
| Cow position: | chr24:13531849-13531618 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 129-665 |
| Cow position: | chr24:12567948-12568489 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 359 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 171, 26 |
| Conread position: | 156-648 |
| Cow position: | chr24:6537281-6537789 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 97 |
| Conread position: | 175-409 |
| Cow position: | chr24:8029889-8030129 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 137, 0 |
| Conread position: | 313-665 |
| Cow position: | chr24:22952044-22952398 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 16 |
| Conread position: | 314-665 |
| Cow position: | chr24:6025186-6024834 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 35 |
| Conread position: | 356-664 |
| Cow position: | chr24:44017496-44017807 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 78 |
| Conread position: | 356-665 |
| Cow position: | chr24:40548828-40549136 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 140 |
| Conread position: | 358-612 |
| Cow position: | chr24:12224517-12224250 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 63, 76 |
| Conread position: | 358-665 |
| Cow position: | chr24:6083969-6084279 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 76 |
| Conread position: | 358-665 |
| Cow position: | chr24:6434193-6434502 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 209 |
| Conread position: | 358-665 |
| Cow position: | chr24:6660656-6660337 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 232 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 65, 76 |
| Conread position: | 363-643 |
| Cow position: | chr24:35838668-35838373 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 71 |
| Conread position: | 363-665 |
| Cow position: | chr24:36560126-36559825 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 71 |
| Conread position: | 366-648 |
| Cow position: | chr24:14585053-14585324 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 50 |
| Conread position: | 367-665 |
| Cow position: | chr24:4415564-4415267 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 67 |
| Conread position: | 368-505 |
| Cow position: | chr24:13531574-13531431 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 53, 66 |
| Conread position: | 379-665 |
| Cow position: | chr24:12086171-12086460 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 102 |
| Conread position: | 388-664 |
| Cow position: | chr24:12237036-12237315 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 202 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 28, 41 |
| Conread position: | 430-645 |
| Cow position: | chr24:33739305-33739092 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 162 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 441-648 |
| Cow position: | chr24:12335733-12335526 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 159 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 525-665 |
| Cow position: | chr24:6645827-6645965 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 18, 64 |
Show alignments to all cow chromosomes.