Cow genome map

Conread name: Ova1-OVRM10078G07

Conread position: 3-665
Cow position: chr28:21358553-21359222 (view UCSC Genome Browser custom track)
Alignm length: 685
Alignm identity: 496
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 64

Conread position: 5-347
Cow position: chr28:17667988-17667638 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 0

Conread position: 6-244
Cow position: chr28:24667147-24667380 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 179
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 30, 65

Conread position: 6-260
Cow position: chr28:2990427-2990184 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 186
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 30, 70

Conread position: 6-360
Cow position: chr28:10619569-10619220 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 97

Conread position: 6-361
Cow position: chr28:5796357-5796703 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 70

Conread position: 6-611
Cow position: chr28:7816781-7817373 (view UCSC Genome Browser custom track)
Alignm length: 622
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 83

Conread position: 6-648
Cow position: chr28:5812246-5812898 (view UCSC Genome Browser custom track)
Alignm length: 666
Alignm identity: 452
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 49

Conread position: 7-255
Cow position: chr28:15035887-15035639 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 19

Conread position: 7-273
Cow position: chr28:489018-489285 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 188
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 29, 0

Conread position: 7-281
Cow position: chr28:7790697-7790436 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 202
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 29, 69

Conread position: 7-315
Cow position: chr28:5115542-5115243 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 126

Conread position: 7-345
Cow position: chr28:8721913-8721573 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 54

Conread position: 7-350
Cow position: chr28:26426733-26426397 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 80

Conread position: 7-357
Cow position: chr28:10582452-10582102 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 19

Conread position: 7-357
Cow position: chr28:29819099-29819454 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 90

Conread position: 7-361
Cow position: chr28:1952671-1953018 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 105

Conread position: 7-409
Cow position: chr28:14750075-14750485 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 0

Conread position: 7-409
Cow position: chr28:15950509-15950918 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 0

Conread position: 7-466
Cow position: chr28:6780799-6780336 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 299
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 29, 222

Conread position: 7-665
Cow position: chr28:13441349-13440656 (view UCSC Genome Browser custom track)
Alignm length: 700
Alignm identity: 467
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 252

Conread position: 8-192
Cow position: chr28:12410964-12410781 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 131
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 28, 18

Conread position: 8-193
Cow position: chr28:5936551-5936735 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 131
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 28, 63

Conread position: 8-247
Cow position: chr28:15378485-15378245 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 177
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 28, 0

Conread position: 8-254
Cow position: chr28:1504170-1504417 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 179
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 28, 0

Conread position: 8-260
Cow position: chr28:5752631-5752378 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 187
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 0

Conread position: 8-320
Cow position: chr28:781926-782239 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 307

Conread position: 8-351
Cow position: chr28:21325325-21325667 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 76

Conread position: 8-357
Cow position: chr28:5565390-5565745 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 0

Conread position: 8-357
Cow position: chr28:7001531-7001872 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 117

Conread position: 8-357
Cow position: chr28:13522262-13522611 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 75

Conread position: 8-357
Cow position: chr28:17388010-17388365 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 19

Conread position: 8-357
Cow position: chr28:32792850-32792495 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 0

Conread position: 8-364
Cow position: chr28:1168635-1168273 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 19

Conread position: 8-665
Cow position: chr28:8378095-8378789 (view UCSC Genome Browser custom track)
Alignm length: 698
Alignm identity: 483
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 677

Conread position: 8-665
Cow position: chr28:18520932-18520239 (view UCSC Genome Browser custom track)
Alignm length: 697
Alignm identity: 487
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 676

Conread position: 8-665
Cow position: chr28:22261622-22260930 (view UCSC Genome Browser custom track)
Alignm length: 696
Alignm identity: 493
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 675

Conread position: 9-260
Cow position: chr28:7739784-7740037 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 0

Conread position: 10-239
Cow position: chr28:28973694-28973463 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 157
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 26, 99

Conread position: 10-665
Cow position: chr28:2083135-2083817 (view UCSC Genome Browser custom track)
Alignm length: 686
Alignm identity: 489
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 664

Conread position: 10-665
Cow position: chr28:22827598-22828234 (view UCSC Genome Browser custom track)
Alignm length: 666
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 237, 18

Conread position: 15-361
Cow position: chr28:1387849-1387507 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 27

Conread position: 15-665
Cow position: chr28:3193238-3192571 (view UCSC Genome Browser custom track)
Alignm length: 674
Alignm identity: 459
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 11

Conread position: 23-357
Cow position: chr28:15920915-15920582 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 238
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 5, 176

Conread position: 32-665
Cow position: chr28:33251900-33252532 (view UCSC Genome Browser custom track)
Alignm length: 644
Alignm identity: 442
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 6

Conread position: 37-362
Cow position: chr28:34593402-34593732 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 275, 0

Conread position: 37-367
Cow position: chr28:13459533-13459865 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 53

Conread position: 38-361
Cow position: chr28:12149889-12150203 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 42-357
Cow position: chr28:14706107-14705788 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 270, 257

Conread position: 46-369
Cow position: chr28:18181776-18181464 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 214
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 166, 23

Conread position: 47-357
Cow position: chr28:34648516-34648815 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 215
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 180, 23

Conread position: 47-619
Cow position: chr28:15584964-15585557 (view UCSC Genome Browser custom track)
Alignm length: 601
Alignm identity: 374
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 31, 187

Conread position: 61-361
Cow position: chr28:2591507-2591804 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 258, 9

Conread position: 76-347
Cow position: chr28:26007634-26007903 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 204
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 13, 9

Conread position: 81-357
Cow position: chr28:15681496-15681773 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 225, 0

Conread position: 83-361
Cow position: chr28:3774232-3773948 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 187
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 30, 26

Conread position: 91-392
Cow position: chr28:9953749-9954056 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 220, 11

Conread position: 102-385
Cow position: chr28:9155655-9155374 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 43

Conread position: 107-665
Cow position: chr28:9137398-9136831 (view UCSC Genome Browser custom track)
Alignm length: 577
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 169, 5

Conread position: 112-345
Cow position: chr28:32331764-32331532 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 158
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 205, 56

Conread position: 112-361
Cow position: chr28:17330898-17330635 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 191
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 118, 187

Conread position: 122-357
Cow position: chr28:1815223-1814984 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 191, 173

Conread position: 124-385
Cow position: chr28:7901005-7901262 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 200, 91

Conread position: 128-409
Cow position: chr28:7821915-7822194 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 207
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 184, 70

Conread position: 140-374
Cow position: chr28:24587098-24587334 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 181
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 20, 73

Conread position: 153-361
Cow position: chr28:14491140-14491346 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 149
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 155, 58

Conread position: 161-311
Cow position: chr28:12410770-12410627 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 114
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 7, 0

Conread position: 179-665
Cow position: chr28:4381108-4380624 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 57

Conread position: 249-368
Cow position: chr28:2846722-2846604 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 92
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 95, 0

Conread position: 249-585
Cow position: chr28:24652062-24652427 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 244
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 60, 358

Conread position: 314-648
Cow position: chr28:15920598-15920258 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 35

Conread position: 339-650
Cow position: chr28:13459863-13460178 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 42

Conread position: 354-665
Cow position: chr28:6780422-6780113 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 28

Conread position: 356-665
Cow position: chr28:2724982-2724670 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 78

Conread position: 356-665
Cow position: chr28:14750457-14750767 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 78

Conread position: 358-536
Cow position: chr28:22233778-22233595 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 138
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 63, 75

Conread position: 358-665
Cow position: chr28:1953041-1953350 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 76

Conread position: 358-665
Cow position: chr28:24587344-24587655 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 294

Conread position: 360-665
Cow position: chr28:9954049-9954353 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 72

Conread position: 361-665
Cow position: chr28:10619196-10618894 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 73

Conread position: 362-648
Cow position: chr28:782310-782601 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 72

Conread position: 362-648
Cow position: chr28:5114885-5114605 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 72

Conread position: 362-650
Cow position: chr28:5565777-5566062 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 211
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 59, 214

Conread position: 362-665
Cow position: chr28:1504766-1505072 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 72

Conread position: 362-665
Cow position: chr28:1814953-1814647 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 72

Conread position: 362-665
Cow position: chr28:7001903-7002210 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 72

Conread position: 362-665
Cow position: chr28:10582071-10581766 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 72

Conread position: 362-665
Cow position: chr28:14705757-14705451 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 72

Conread position: 362-665
Cow position: chr28:15378077-15377772 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 72

Conread position: 363-643
Cow position: chr28:9155369-9155079 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 18

Conread position: 363-654
Cow position: chr28:34648859-34649156 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 80

Conread position: 363-664
Cow position: chr28:1387479-1387180 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 71

Conread position: 363-665
Cow position: chr28:8721533-8721228 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 71

Conread position: 363-665
Cow position: chr28:17667598-17667293 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 71

Conread position: 367-665
Cow position: chr28:7822177-7822478 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 67

Conread position: 368-665
Cow position: chr28:2591837-2592135 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 13

Conread position: 369-664
Cow position: chr28:24667503-24667799 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 35

Conread position: 382-651
Cow position: chr28:32792446-32792170 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 53

Conread position: 382-665
Cow position: chr28:12410287-12410005 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 52

Conread position: 440-665
Cow position: chr28:1167883-1167661 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 172
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 158, 77

Conread position: 441-665
Cow position: chr28:5751707-5751485 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 178
Alignm E-value: 0
Alignm gaps (pig, cow): 208, 0

Conread position: 444-665
Cow position: chr28:29819736-29819954 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 168
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 201, 0

Conread position: 450-647
Cow position: chr28:34593987-34594184 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 156
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 490-655
Cow position: chr28:5800673-5800837 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 123
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 5, 0

Show alignments to all cow chromosomes.