Cow genome map

Conread name: Ova1-OVRM10078G07

Conread position: 6-222
Cow position: chr29:8663778-8663987 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 158
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 30, 55

Conread position: 6-236
Cow position: chr29:21431849-21431617 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 170
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 30, 215

Conread position: 6-640
Cow position: chr29:2750878-2750253 (view UCSC Genome Browser custom track)
Alignm length: 650
Alignm identity: 459
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 62

Conread position: 7-258
Cow position: chr29:18857292-18857040 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 135
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 29, 0

Conread position: 7-357
Cow position: chr29:2099341-2099694 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 19

Conread position: 7-357
Cow position: chr29:30811040-30811382 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 252
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 19, 210

Conread position: 7-357
Cow position: chr29:43322052-43322409 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 0

Conread position: 7-358
Cow position: chr29:611119-610761 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 0

Conread position: 7-361
Cow position: chr29:13577921-13578272 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 192

Conread position: 7-361
Cow position: chr29:15895352-15894997 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 76

Conread position: 7-402
Cow position: chr29:31121288-31121701 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 279
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 29, 172

Conread position: 7-409
Cow position: chr29:15969646-15969248 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 265
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 305, 165

Conread position: 7-409
Cow position: chr29:27250838-27250432 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 18

Conread position: 7-636
Cow position: chr29:16109222-16109887 (view UCSC Genome Browser custom track)
Alignm length: 671
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 253

Conread position: 7-665
Cow position: chr29:32315536-32316227 (view UCSC Genome Browser custom track)
Alignm length: 698
Alignm identity: 457
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 160

Conread position: 8-348
Cow position: chr29:20250654-20251000 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 0

Conread position: 8-357
Cow position: chr29:2841870-2841519 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 0

Conread position: 8-357
Cow position: chr29:7431721-7431366 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 0

Conread position: 8-357
Cow position: chr29:16022028-16022379 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 249
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 28, 238

Conread position: 8-357
Cow position: chr29:21246067-21246419 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 299, 27

Conread position: 8-357
Cow position: chr29:23975328-23975686 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 19

Conread position: 8-357
Cow position: chr29:40503484-40503129 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 0

Conread position: 8-357
Cow position: chr29:45459219-45459565 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 84

Conread position: 8-363
Cow position: chr29:32539306-32539666 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 212

Conread position: 8-367
Cow position: chr29:25933049-25932684 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 0

Conread position: 8-648
Cow position: chr29:19652603-19653280 (view UCSC Genome Browser custom track)
Alignm length: 679
Alignm identity: 481
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 433

Conread position: 8-648
Cow position: chr29:45587803-45587188 (view UCSC Genome Browser custom track)
Alignm length: 643
Alignm identity: 476
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 306

Conread position: 8-664
Cow position: chr29:48981-48293 (view UCSC Genome Browser custom track)
Alignm length: 693
Alignm identity: 488
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 361

Conread position: 8-665
Cow position: chr29:2689416-2690087 (view UCSC Genome Browser custom track)
Alignm length: 692
Alignm identity: 483
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 75

Conread position: 8-665
Cow position: chr29:10648750-10648065 (view UCSC Genome Browser custom track)
Alignm length: 689
Alignm identity: 481
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 668

Conread position: 8-665
Cow position: chr29:10824461-10823783 (view UCSC Genome Browser custom track)
Alignm length: 685
Alignm identity: 474
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 151

Conread position: 8-665
Cow position: chr29:26165323-26164636 (view UCSC Genome Browser custom track)
Alignm length: 695
Alignm identity: 485
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 63

Conread position: 8-665
Cow position: chr29:38226490-38227166 (view UCSC Genome Browser custom track)
Alignm length: 688
Alignm identity: 489
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 178

Conread position: 9-665
Cow position: chr29:39080211-39079526 (view UCSC Genome Browser custom track)
Alignm length: 690
Alignm identity: 482
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 19

Conread position: 14-592
Cow position: chr29:28061165-28060548 (view UCSC Genome Browser custom track)
Alignm length: 622
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 245

Conread position: 25-665
Cow position: chr29:35196199-35196850 (view UCSC Genome Browser custom track)
Alignm length: 672
Alignm identity: 446
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 31

Conread position: 29-648
Cow position: chr29:6266974-6266329 (view UCSC Genome Browser custom track)
Alignm length: 650
Alignm identity: 465
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 8

Conread position: 32-319
Cow position: chr29:14368466-14368753 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 200
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 93, 79

Conread position: 37-348
Cow position: chr29:19623719-19623406 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 277, 0

Conread position: 43-202
Cow position: chr29:42649898-42650053 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 121
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 39, 0

Conread position: 43-202
Cow position: chr29:42801758-42801913 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 120
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 39, 0

Conread position: 43-361
Cow position: chr29:5957138-5957456 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 269, 36

Conread position: 46-366
Cow position: chr29:4635426-4635108 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 212
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 261, 43

Conread position: 46-367
Cow position: chr29:12796932-12796606 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 103

Conread position: 46-609
Cow position: chr29:6470979-6471523 (view UCSC Genome Browser custom track)
Alignm length: 574
Alignm identity: 361
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 264, 47

Conread position: 53-368
Cow position: chr29:32890749-32891072 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 210
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 159, 0

Conread position: 53-654
Cow position: chr29:104126-104746 (view UCSC Genome Browser custom track)
Alignm length: 633
Alignm identity: 449
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 159

Conread position: 56-665
Cow position: chr29:410945-410339 (view UCSC Genome Browser custom track)
Alignm length: 610
Alignm identity: 176
Alignm E-value: 0
Alignm gaps (pig, cow): 588, 0

Conread position: 62-640
Cow position: chr29:9644171-9643592 (view UCSC Genome Browser custom track)
Alignm length: 591
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 257, 323

Conread position: 76-316
Cow position: chr29:34752119-34751890 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 171
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 17, 0

Conread position: 81-374
Cow position: chr29:10848535-10848245 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 219
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 144, 78

Conread position: 81-665
Cow position: chr29:11048851-11049464 (view UCSC Genome Browser custom track)
Alignm length: 618
Alignm identity: 453
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 532

Conread position: 94-357
Cow position: chr29:34800220-34799960 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 225, 76

Conread position: 99-305
Cow position: chr29:2468353-2468147 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 153
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 0, 0

Conread position: 101-664
Cow position: chr29:14013061-14013649 (view UCSC Genome Browser custom track)
Alignm length: 598
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 145

Conread position: 101-664
Cow position: chr29:14073352-14072762 (view UCSC Genome Browser custom track)
Alignm length: 600
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 147

Conread position: 102-357
Cow position: chr29:43366401-43366147 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 194
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 197, 41

Conread position: 102-366
Cow position: chr29:27041170-27040905 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 210, 0

Conread position: 102-374
Cow position: chr29:21543782-21543499 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 196, 127

Conread position: 102-665
Cow position: chr29:16769726-16770309 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 353

Conread position: 107-665
Cow position: chr29:1714854-1715428 (view UCSC Genome Browser custom track)
Alignm length: 590
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 93

Conread position: 112-654
Cow position: chr29:10843893-10844420 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 324
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 222, 15

Conread position: 114-361
Cow position: chr29:7840400-7840650 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 185
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 94, 112

Conread position: 161-361
Cow position: chr29:35296526-35296728 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 152
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 65, 118

Conread position: 175-654
Cow position: chr29:11841353-11841841 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 9

Conread position: 211-361
Cow position: chr29:13853321-13853168 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 124
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 101, 61

Conread position: 217-361
Cow position: chr29:31180828-31180977 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 115
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 95, 0

Conread position: 219-361
Cow position: chr29:21427348-21427201 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 111
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 86, 0

Conread position: 245-665
Cow position: chr29:42650059-42650470 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 111

Conread position: 245-665
Cow position: chr29:42801919-42802330 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 111

Conread position: 334-665
Cow position: chr29:18857092-18856758 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 100

Conread position: 356-665
Cow position: chr29:15894976-15894664 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 295

Conread position: 356-665
Cow position: chr29:35296749-35297060 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 78

Conread position: 358-665
Cow position: chr29:610735-610426 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 35

Conread position: 358-665
Cow position: chr29:19884946-19885256 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 76

Conread position: 362-647
Cow position: chr29:40503098-40502809 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 59

Conread position: 362-647
Cow position: chr29:45459596-45459884 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 46

Conread position: 362-648
Cow position: chr29:34799929-34799636 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 72

Conread position: 362-665
Cow position: chr29:2841488-2841187 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 188

Conread position: 362-665
Cow position: chr29:14585808-14586108 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 72

Conread position: 362-665
Cow position: chr29:16022410-16022716 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 70

Conread position: 362-665
Cow position: chr29:32539691-32539996 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 73

Conread position: 362-665
Cow position: chr29:43322440-43322741 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 70

Conread position: 363-576
Cow position: chr29:21427173-21426958 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 161
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 53, 69

Conread position: 363-665
Cow position: chr29:670175-669871 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 219

Conread position: 363-665
Cow position: chr29:10848227-10847906 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 71

Conread position: 363-665
Cow position: chr29:17662805-17663090 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 57

Conread position: 363-665
Cow position: chr29:21543483-21543183 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 71

Conread position: 363-665
Cow position: chr29:27250453-27250156 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 71

Conread position: 367-648
Cow position: chr29:27040878-27040597 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 67

Conread position: 376-648
Cow position: chr29:25932650-25932372 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 58

Conread position: 420-648
Cow position: chr29:23975779-23976012 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 13

Conread position: 507-665
Cow position: chr29:34925505-34925665 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 126
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 39, 143

Conread position: 568-665
Cow position: chr29:21426932-21426838 (view UCSC Genome Browser custom track)
Alignm length: 98
Alignm identity: 83
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 77, 0

Show alignments to all cow chromosomes.